These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10435#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 794 fasta sequence [TCTCCTTGTCTCTGCTCTCC-CACGCGGAGTGGAGGAGGGATTAATCGGAAGCATATCAATCGGCGGCCATGACGATC-GCGGCGCGTCCTCCATCGGCGACGGCACCGTCAGCTACGGCATGGACGACGACGGCGACGACATCTTCATGCGCTCCTGGACCGGCACAATCATTGGACCACTCAACTCTGTGCACGAGGGGCGCATCTACCAGCTGAAGCTCTTCTGCGACAAGGACTACCCCGACAAGCCGCCCACCGTGCGCTTCCACTCCAGGATCAACATGCCCTGCGTCAACCCTGACACCGGACTGGTCGAAAGCAAGAAGTTCCATATGCTGGCAAACTGGCAGAGGGAGTACACCATGGAGAATATCCTGACGCAGCTGAAGAAGGAGATGGCCGCGCCGCACAGCCGCAAGCTGGTTCAGCCTCCAGAAGGGACCTTCTTCTAGTCATACCGTGAGATGTTCGAGGGCATGTTCCTGTTGCTGCTGCTGCTGCTATATACTCATATAGGATTGGATTGCTATCTCTGTCCATGGCACGCACCGTTCGTAACTATCACCTGCCCCCAAATCTGTCACCTGAAAGGTAGTAGTACTAGATGTGTATGTAGTGCAGTGTTGTTGGTAATTACTGAATCGCCTTGCTAATGCCTAATGGCTGCCCTGCTTGCTATCATATGCATGCCAATGTGAAGGACAGGTTTGGCTTGGTTTGAACGCTGAGAGAGATTGAATAACACGAGACCTCCTGTATCTGGCACCGTATAGACTCCTATGATTTATGCATGTG] [+] EMBL CF302179 [TCTCCTTGTCTCTGCTCTCC CACGCGGAGTGGAGGAGGGATTAATCGGAAGCATATCAATCGGCGGCCATGACGATCGGCGGCGCGTCCTC ] [+] EMBL AK066799 [ CTCCTTGTCTCTGCTCTCCACACGCGGAGTGGAGGAGGGATTAATCGGAAGCATATCAATCGGCGGCCATGACGAGC GTGGCGAGAAGGGCATCGGCGACGGCACCGTCAGCTACGGCATGGACGACGACGGCGACGACATCTTCATGCGCTCCTGGACCGGCACAATCATTGGACCACTCAACTCTGTGCACGAGGGGCGCATCTACCAGCTGAAGCTCTTCTGCGACAAGGACTACCCCGACAAGCCGCCCACCGTGCGCTTCCACTCCAGGATCAACATGCCCTGCGTCAACCCTGACACCGGGCTGGTCGAAAGCAAGAAGTTCCATATGCTGGCAAACTGGCAGAGGGAGTACACCATGGAGAATATCCTGACGCAGCTGAAGAAGGAGATGGCCGCGCCGCACAGCCGCAAGCTGGTTCAGCCTCCAGAAGGGACCTTCTTCTAGTCATACCGTGAGATGTTCGAGGGCATGTTCCTGTTGCTGCTGCTGCTGCTATATACTCATATAGGATTGGATTGCTATCTCTGTCCATGGCACGCACCGTTCGTAACTATCACCTGCCCCCAAATCTGTCACCTGAAAGGTAGTAGTACTAGATGTGTATGTAGTGCAGTGTTGTTGGTAATTACTGAATCGCCTTGCTAATGCCTAATGGCTGCCCTGCTTGCTATCATATGCATGCCAATGTGAAGGACAGGTTTGGCTTGGTTTGAACGCTGAGAGAGATTGAATAACACGAGACCTCCTGTATCTGGCACCGTATAGACTCCTATGATTTATGCATGTG] [-] EMBL CF294960 [ GATCAACATGCCCTGCGTCAACCCTGACACCGGACTGGTTGAAAGCAAGAAGTTCCATATGCTGGCAAACTGGCAGAGGGAGTACACCATGGAGAATATCCTGACGCAGCTGAAGAAGGAGATGGCCGCGCCGCACAGCCGCAAGTTGGTTCAGCCTCCAGAAGGGACCTTTTTCTAGTCATACCGTGAGATGTTCGAGGGCATGTTCCTGTTGCTGCTGCTGCTGCTATATACTCATATAGGATTGGATTGCTATCTCTGTCCATGGCACGCACCGTTTGTAACTATCACCTGCCCCCAAATTTGTCACCTGAAAGGTAGTAGTACTAGATGTGTATGTAGTGCAGTGTTGTTGGTAATTACTGAATCGCCTTGCTAATGCCTAATGGCTGCCCTGCTTGCTATCATATGCATGCCAATGTGGAGGACAGGTTTGGCTTGGTTTGAACGCTGAGAGAGATTGAATAACACGAGACCTCCTGTATCTGGCCCCGTAaaaaaaaaa ] [+] EMBL D42592 [ CTGCGTCAACCCTGACACCGGACTGGTCGAAAGCAAGAAGTTCCATATGCTGGCAAACTGGCAGAGGGAGTACACCATGGAGAATATCCTGACGCAGCTGAAGAAGGAGATNGCCGC NCGCACAGCCGCAAGCTGGTTCAGCCTCCAGAAGGGACCTTCTTCTAGTCATACCGTGAGATGTTCGAGGGCATGTTCCTGTTGCTGCTGCTGCTGCTATATACTCATATAGGATTGGATTGCTATCTCTGTCCATGGCACGCACCGTTCGTAACTATCACCTGCNCCCAAATCTGTCACCTGAAA GTAGTAGTACTAGATGTGTATGTAGTGCAGTGTTGTTGGTAATTACTGAATC ] [+] EMBL AK058755 [ GCAGTGTTGTTGGTAATTACTGAATCGCCTTGCTAATGCCTAATGGCTGCCCTGCTTGCTATCATATGCATGCCAATGTGAAGGACAGGTTTGGCTTGGTTTGAACGCTGAGAGAGATTGAATAACACGAGACCTCC ] [-] EMBL CB966582 [ TGCTAATGCCTAATGGCTGCCCTGCTTGCTATCATATGCATGCCAATGTGAAGGACAGGTTTGGCTTGGTTTGAACGCTGAGAGAGA ] consensusID : consensus_10435#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 260 fasta sequence [GACTGCTATTTCTGTCCACGGCACGCACCGTTGGTAACTATCACCTGCCCCCAAATCTGTCCCCTGAAAGGTAGTAGTACTAAATGTGTATGTAGTGCAGTGTTGTTGGTAATTACTGAATCGCCTTGCTAATGCCTAATGGCTGCCCTGCTTGCTATCATATGCATGCCAATGTGAAGGACAGGTTTGGCTTGGTTTGAACGCTGAGATTAGTATGTAATACCACGAGCCCTCCTGTATTGTGGCAAAAAAAAAAAAAA] [-] EMBL CF296465 [GACTGCTATTTCTGTCCACGGCACGCACCGTTGGTAACTATCACCTGCCCCCAAATCTGTCCCCTGAAAGGTAGTAGTACTAAATGTGTATGTAGTGCAGTGTTGTTGGTAATTACTGAATCGCCTTGCTAATGCCTAATGGCTGCCCTGCTTGCTATCATATGCATGCCAATGTGAAGGACAGGTTTGGCTTGGTTTGAACGCTGAGATTAGTATGTAATACCACGAGCCCTCCTGTATTGTGGCAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10435#0 TCTCCTTGTCTCTGCTCTCCCACGCGGAGTGGAGGAGGGATTAATCGGAAGCATATCAAT 60 consensus_10435#1 ------------------------------------------------------------ consensus_10435#0 CGGCGGCCATGACGATCGCGGCGCGTCCTCCATCGGCGACGGCACCGTCAGCTACGGCAT 120 consensus_10435#1 ------------------------------------------------------------ consensus_10435#0 GGACGACGACGGCGACGACATCTTCATGCGCTCCTGGACCGGCACAATCATTGGACCACT 180 consensus_10435#1 ------------------------------------------------------------ consensus_10435#0 CAACTCTGTGCACGAGGGGCGCATCTACCAGCTGAAGCTCTTCTGCGACAAGGACTACCC 240 consensus_10435#1 ------------------------------------------------------------ consensus_10435#0 CGACAAGCCGCCCACCGTGCGCTTCCACTCCAGGATCAACATGCCCTGCGTCAACCCTGA 300 consensus_10435#1 ------------------------------------------------------------ consensus_10435#0 CACCGGACTGGTCGAAAGCAAGAAGTTCCATATGCTGGCAAACTGGCAGAGGGAGTACAC 360 consensus_10435#1 ------------------------------------------------------------ consensus_10435#0 CATGGAGAATATCCTGACGCAGCTGAAGAAGGAGATGGCCGCGCCGCACAGCCGCAAGCT 420 consensus_10435#1 ------------------------------------------------------------ consensus_10435#0 GGTTCAGCCTCCAGAAGGGACCTTCTTCTAGTCATACCGTGAGATGTTCGAGGGCATGTT 480 consensus_10435#1 ------------------------------------------------------------ consensus_10435#0 CCTGTTGCTGCTGCTGCTGCTATATACTCATATAGGATTGGATTGCTATCTCTGTCCATG 540 consensus_10435#1 ----------------------------------------GACTGCTATTTCTGTCCACG 20 ** ****** ******** * consensus_10435#0 GCACGCACCGTTCGTAACTATCACCTGCCCCCAAATCTGTCACCTGAAAGGTAGTAGTAC 600 consensus_10435#1 GCACGCACCGTTGGTAACTATCACCTGCCCCCAAATCTGTCCCCTGAAAGGTAGTAGTAC 80 ************ **************************** ****************** consensus_10435#0 TAGATGTGTATGTAGTGCAGTGTTGTTGGTAATTACTGAATCGCCTTGCTAATGCCTAAT 660 consensus_10435#1 TAAATGTGTATGTAGTGCAGTGTTGTTGGTAATTACTGAATCGCCTTGCTAATGCCTAAT 140 ** ********************************************************* consensus_10435#0 GGCTGCCCTGCTTGCTATCATATGCATGCCAATGTGAAGGACAGGTTTGGCTTGGTTTGA 720 consensus_10435#1 GGCTGCCCTGCTTGCTATCATATGCATGCCAATGTGAAGGACAGGTTTGGCTTGGTTTGA 200 ************************************************************ consensus_10435#0 ACGCTGAGA--GAGATTGAATAACACGAGACCTCCTGTATC-TGGCACCGTATAGACTCC 777 consensus_10435#1 ACGCTGAGATTAGTATGTAATACCACGAGCCCTCCTGTATTGTGGCAAAAAAAAAAAAAA 260 ********* ** **** ****** ********** ***** * * * consensus_10435#0 TATGATTTATGCATGTG 794 consensus_10435#1 ----------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||