These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10436#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 900 fasta sequence [AAATGCGATACCTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGCCATCCGGCCGAGGGCACGCCTGCCTGGGCGTCACGCCTGCAGCTTCGTTATGGAGTATGACATCCATACTGTGCTAGATACTGCTACACTTGCAGCTACACTTTTTGTAATCTACATGATCCGGTTCAAATTGAGACCAACTTATATGGTGGACAAGGACAATTTTGCATTGTACTATGTGGTGGTACCTTGTGCTGTGCTAGCACTGCTTATTCATCCTTCAACATCTCATAACATTGTGAACCGTATCAGCTGGGCATTTTGTGTTTACTTGGAAGCTGTCTCAGTTCTACCACAGCTGCGTTTGATGCAAAACACAAAGATTGTTGAGCCGTTCACAGCACACTATGTGTTTGCATTGGGAGTTGCAAGGTTTCTTAGCTGTGCACACTGGGTTCTTCAGGTATTGGATACTCGTGGTCGATTGTTGACTGCTCTGGGCTATGGCTTGTGGCCATCTATGGTGCTTCTGTCGGAAATCGTGCAGACATTCATCCTTGCTGATTTCTGCTACTACTATGTGAAGAGTTTGGTCGGTGGGCAGCTGGTGCTACGGCTTCCATCTGGGGTGGTGTAAGAACTGTAGAAGGATACAAAGCTTCCAGCTTCACCCATTTTTATGTACTCTGAATAACAGTTATGTTCTAGTGTCCGACCTTCTGTGTCTCTTACCAAGACCGAGACCGGAGCCTTTTTTTTACTTGATATTTTGAGGTATAACTATTAATGACAAGTGCACTAGAGTCTTCTTAAACATAGGTCGTTGAATGACTGTTTATAGTTGCGAATGTGCTGATACTTTGGTTCAATTTAGCTTCTGGGTACAT] [+] EMBL AK108434 [AAATGCGATACCTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAGGCCATCCGGCCGAGGGCACGCCTGCCTGGGCGTCACGCCTGCAGCTTCGTTATGGAGTATGACATCCATACTGTGCTAGATACTGCTACACTTGCAGCTACACTTTTTGTAATCTACATGATCCGGTTCAAATTGAGACCAACTTATATGGTGGACAAGGACAATTTTGCATTGTACTATGTGGTGGTACCTTGTGCTGTGCTAGCACTGCTTATTCATCCTTCAACATCTCATAACATTGTGAACCGTATCAGCTGGGCATTTTGTGTTTACTTGGAAGCTGTCTCAGTTCTACCACAGCTGCGTTTGATGCAAAACACAAAGATTGTTGAGCCGTTCACAGCACACTATGTGTTTGCATTGGGAGTTGCAAGGTTTCTTAGCTGTGCACACTGGGTTCTTCAGGTATTGGATACTCGTGGTCGATTGTTGACTGCTCTGGGCTATGGCTTGTGGCCATCTATGGTGCTTCTGTCGGAAATCGTGCAGACATTCATCCTTGCTGATTTCTGCTACTACTATGTGAAGAGTTTGGTCGGTGGGCAGCTGGTGCTACGGCTTCCATCTGGGGTGGTGTAAGAACTGTAGAAGGATACAAAGCTTCCAGCTTCACCCATTTTTATGTACTCTGAATAACAGTTATGTTCTAGTGTCCGACCTTCTGTGTCTCTTACCAAGACCGAGACCGGAGCCTTTTTTTTACTTGATATTTTGAGGTATAACTATTAATGACAAGTGCACTAGAGTCTTCTTAAACATAGGTCGTTGAATGACTGTTTATAGTTGCGAATGTGCTGATACTTTGGTTCAATTTAGCTTCTGGGTACAT] [+] EMBL CA882872 [ AACAGTTATGTTCTAGTGTCCGACCTTCTGTGTCTCTTACCAAGACCGAGACCGGAGCCTTTTTTTTACTTGATATTTTGAGGTATAACTATTAATGACAAGTGCACTAGAGTCTTCTTAAACATAGGTCGTTGAATGACTGTTTATAGTTGCGAATGTGCTGATACTTTGGTTCAATTTA ] consensusID : consensus_10436#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 684 fasta sequence [AGTCAGCTGTAATGCTCATAAATCTCTTAGTTAAAATGGATGCTTACTTATCGGGTTCTTTTATTTATTACTTTTTTGAAGGTGGTACCTTGTGCTGTGCTAGCACTGCTTATTCATCCTTCAACATCTCATAACATTGTGAACCGTATCAGCTGGGCATTTTGTGTTTACTTGGAAGCTGTCTCAGTTCTACCACAGCTGCGTTTGATGCAAAACACAAAGATTGTTGAGCCGTTCACAGCACACTATGTGTTTGCATTGGGAGTTGCAAGGTTTCTTAGCTGTGCACACTGGGTTCTTCAGGTATTGGATACTCGTGGTCGATTGTTGACTGCTCTGGGCTATGGCTTGTGGCCATCTATGGTGCTTCTGTCGGAAATCGTGCAGACATTCATCCTTGCTGATTTCTGCTACTACTATGTGAAGAGTTTGGTCGGTGGGCAGCTGGTGCTACGGCTTCCATCTGGGGTGGTGTAAGAACTGTAGAAGGATACAAAGCTTCCAGCTTCACCCATTTTTATGTACTCTGAATAACAGTTATGTTCTAGTGTCCGACCTTCTGTGTCTCTTACCAAGACCGAGACCGGAGCCTTTTTTTTACTTGATA-TTTGAGGTATAACTATTAATGACAAGTGCACTAGAGTCTTCTTAAACATAAAAAGTTGAATGAAAAAAAAAAAAAAA] [+] EMBL CF330262 [AGTCAGCTGTAATGCTCATAAATCTCTTAGTTAAAATGGATGCTTACTTATCGGGTTCTTTTATTTATTACTTTTTTGAAGGTGGTACCTTGTGCTGTGCTAGCACTGCTTATTCATCCTTCAACATCTCATAACATTGTGAACCGTATCAGCTGGGCATTTTGTGTTTACTTGGAAGCTGTCTCAGTTCTACCACAGCTGCGTTTGATGCAAAACACAAAGATTGTTGAGCCGTTCACAGCACACTATGTGTTTGCATTGGGAGTTGCAAGGTTTCTTAGCTGTGCACACTGGGTTCTTCAGGTATTGGATACTCGTGGTCGATTGTTGACTGCTCTGGGCTATGGCTTGTGGCCATCTATGGTGCTTCTGTCGGAAATCGTGCAGACATTCATCCTTGCTGATTTCTGCTACTACTATGTGAAGAGTTTGGTCGGTGGGCAGCTGGTGCTACGGCTTCCATCTG ] [-] EMBL CF330261 [ ACTTTTTTGAAGGTGGTACCTTGTGCTGTGCTAGCACTGCTTATTCATCCTTCAACATCTCATAACATTGTGAACCGTATCAGCTGGGCATTTTGTGTTTACTTGGAAGCTGTCTCAGTTCTACCACAGCTGCGTTTGATGCAAAACACAAAGATTGTTGAGCCGTTCACAGCACACTATGTGTTTGCATTGGGAGTTGCAAGGTTTCTTAGCTGTGCACACTGGGTTCTTCAGGTATTGGATACTCGTGGTCGATTGTTGACTGCTCTGGGCTATGGCTTGTGGCCATCTATGGTGCTTCTGTCGGAAATCGTGCAGACATTCATCCTTGCTGATTTCTGCTACTACTATGTGAAGAGTTTGGTCGGTGGGCAGCTGGTGCTACGGCTTCCATCTGGGGTGGTGTAAGAACTGTAGAAGGATACAAAGCTTCCAGCTTCACCCATTTTTATGTACTCTGAATAACAGTTATGTTCTAGTGTCCGACCTTCTGTGTCTCTTACCAAGACCGAGACCGGAGCCTTTTTTTTACTTGATA TTTGAGGTATAACTATTAATGACAAGTGCACTAGAGTCTTCTTAAACATAAAAA ] [+] EMBL C99387 [ TGCTCTGGGCTATGGCTTGTGGCCATCTATGGTGCNTCTGTCGGAAATCGTGCAGACATTCANCCTTGCTGATTTCTGCTACTACTATGTGAAGAGTTTGGTCGGTGGGCAGCTGGTGCTACGGCTTCCATCTGGGGTGGTGTAAGAACTGTAGAAGGATACNAAACTTCCAGCTTCACCCATTTTTATGTACTCTGAATAACAGTTATGTTCTAGTGTCCGACCTTCTGTGTCTCTTACCAAGACCGAGACCGGAGCCTTTTTTTTACTTGATATTTTGAGGTATAACTATTAATGACAAGTGCACTAGAGTCTTCTTAAACATAGGTCGTTGAATGAAAAAAAAAAAAAAA] consensusID : consensus_10436#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 417 fasta sequence [CGGACTATCCCTCAAGTCTCAGGATTTAACTGCGTTGTTTCTAGCTGTTAGACTATACTGCAGCTTCGTTATGGAGTATGACATCCATACTGTGCTAGATACTGCTACACTTGCAGCTACACTTTTTGTAATCTACATGATCCGGTTCAAATTGAGACCAACTTATATGGTGGACAAGGACAATTTTGCATTGTACTATGTGGTGGTACCTTGTGCTGTGCTAGCACTGCTTATTCATCCTTCAACATCTCATAACATTGTGAACCGTATCAGCTGGGCATTTTGTGTTTACTTGGAAGCTGTCTCAGTTCTACCACAGCTGCGTTTGATGCAAAACACAAAGATTGTTGAGCCGTTCACAGCACACTATGTGTTTGCATTGGGAGTTGCAAGGTTTCTTAGCTGTGCACACTGGGT] [+] EMBL AU173126 [CGGACTATCCCTCAAGTCTCAGGATTTAACTGCGTTGTTTCTAGCTGTTAGACTATACTGCAGCTTCGTTATGGAGTATGACATCCATACTGTGCTAGATACTGCTACACTTGCAGCTACACTTTTTGTAATCTACATGATCCGGTTCAAATTGAGACCAACTTATATGGTGGACAAGGACAATTTTGCATTGTACTATGTGGTGGTACCTTGTGCTGTGCTAGCACTGCTTATTCATCCTTCAACATCTCATAACATTGTGAACCGTATCAGCTGGGCATTTTGTGTTTACTTGGAAGCTGTCTCAGTTCTACCACAGCTGCGTTTGATGCAAAACACAAAGATTGTTGAGCCGTTCACAGCACACTATGTGTTTGCATTGGGAGTTGCAAGGTTTCTTAGCTGTGCACACTGGGT] [+] EMBL AU164647 [CGGACTATCCCTCAAGTCTCAGGATTTAACTGCGTTGTTTCTAGCTGTTAGACTATACTGCAGCTTCGTTATGGAGTATGACATCCATACTGTGCTAGATACTGCTACACTTGCAGCTACACTTTTTGTAATCTACATGATCCGGTTCAAATTGAGACCAACTTATATGGTGGACAAGGACAATTTTGCATTGTACTATGTGGTGGTACCTTGTGCTGTGCTAGCACTGCTTATTCATCCTTCAACATCTCATAACATTGTGAACCGTATCAGCTGGGCATTTTGTGTTTACTTGGAAGCTGTCTCAGTTCTACCACAGCTGCGTTTGATGCAAAACACAAAGATTGTTGAGCCGTTCACAGCACACTATGTGTTT ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10436#0 AAATGCGATACCTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAG 60 consensus_10436#2 -------------------------------------------------CGGACTATCCC 11 consensus_10436#1 ------------------------------------------------------------ consensus_10436#0 TTGCGCCCGAGGCCATCCGGCCGAGGGCACGCCTGCCTGGGCGTCACGCCTGCAGCTTCG 120 consensus_10436#2 TCAAGTCTCAGG--ATTTAACTGCGT-TGTTTCTAGCTGTTAGACTATACTGCAGCTTCG 68 consensus_10436#1 ------------------------------------------------------------ consensus_10436#0 TTATGGAGTATGACATCCATACTGTGCTAGATACTGCTACACTTGCAGCTACACTTTTTG 180 consensus_10436#2 TTATGGAGTATGACATCCATACTGTGCTAGATACTGCTACACTTGCAGCTACACTTTTTG 128 consensus_10436#1 ------------------------------------------AGTCAGCTGTAATGCTCA 18 ***** * * * consensus_10436#0 TAATCTACATGATCCGGTTCAAATTGAGACCAACTTATATGGTGGACAAGGACAATTTTG 240 consensus_10436#2 TAATCTACATGATCCGGTTCAAATTGAGACCAACTTATATGGTGGACAAGGACAATTTTG 188 consensus_10436#1 TAA-----ATCTCTTAGTTAAAATGGATGCTTACTTATCGGGTTCTT-----TTATTTAT 68 *** ** *** **** ** * ****** *** **** consensus_10436#0 CATTGTACTATGTGGTGGTACCTTGTGCTGTGCTAGCACTGCTTATTCATCCTTCAACAT 300 consensus_10436#2 CATTGTACTATGTGGTGGTACCTTGTGCTGTGCTAGCACTGCTTATTCATCCTTCAACAT 248 consensus_10436#1 TACTTTTTTG-AAGGTGGTACCTTGTGCTGTGCTAGCACTGCTTATTCATCCTTCAACAT 127 * * * * *********************************************** consensus_10436#0 CTCATAACATTGTGAACCGTATCAGCTGGGCATTTTGTGTTTACTTGGAAGCTGTCTCAG 360 consensus_10436#2 CTCATAACATTGTGAACCGTATCAGCTGGGCATTTTGTGTTTACTTGGAAGCTGTCTCAG 308 consensus_10436#1 CTCATAACATTGTGAACCGTATCAGCTGGGCATTTTGTGTTTACTTGGAAGCTGTCTCAG 187 ************************************************************ consensus_10436#0 TTCTACCACAGCTGCGTTTGATGCAAAACACAAAGATTGTTGAGCCGTTCACAGCACACT 420 consensus_10436#2 TTCTACCACAGCTGCGTTTGATGCAAAACACAAAGATTGTTGAGCCGTTCACAGCACACT 368 consensus_10436#1 TTCTACCACAGCTGCGTTTGATGCAAAACACAAAGATTGTTGAGCCGTTCACAGCACACT 247 ************************************************************ consensus_10436#0 ATGTGTTTGCATTGGGAGTTGCAAGGTTTCTTAGCTGTGCACACTGGGTTCTTCAGGTAT 480 consensus_10436#2 ATGTGTTTGCATTGGGAGTTGCAAGGTTTCTTAGCTGTGCACACTGGGT----------- 417 consensus_10436#1 ATGTGTTTGCATTGGGAGTTGCAAGGTTTCTTAGCTGTGCACACTGGGTTCTTCAGGTAT 307 ************************************************* consensus_10436#0 TGGATACTCGTGGTCGATTGTTGACTGCTCTGGGCTATGGCTTGTGGCCATCTATGGTGC 540 consensus_10436#2 ------------------------------------------------------------ consensus_10436#1 TGGATACTCGTGGTCGATTGTTGACTGCTCTGGGCTATGGCTTGTGGCCATCTATGGTGC 367 consensus_10436#0 TTCTGTCGGAAATCGTGCAGACATTCATCCTTGCTGATTTCTGCTACTACTATGTGAAGA 600 consensus_10436#2 ------------------------------------------------------------ consensus_10436#1 TTCTGTCGGAAATCGTGCAGACATTCATCCTTGCTGATTTCTGCTACTACTATGTGAAGA 427 consensus_10436#0 GTTTGGTCGGTGGGCAGCTGGTGCTACGGCTTCCATCTGGGGTGGTGTAAGAACTGTAGA 660 consensus_10436#2 ------------------------------------------------------------ consensus_10436#1 GTTTGGTCGGTGGGCAGCTGGTGCTACGGCTTCCATCTGGGGTGGTGTAAGAACTGTAGA 487 consensus_10436#0 AGGATACAAAGCTTCCAGCTTCACCCATTTTTATGTACTCTGAATAACAGTTATGTTCTA 720 consensus_10436#2 ------------------------------------------------------------ consensus_10436#1 AGGATACAAAGCTTCCAGCTTCACCCATTTTTATGTACTCTGAATAACAGTTATGTTCTA 547 consensus_10436#0 GTGTCCGACCTTCTGTGTCTCTTACCAAGACCGAGACCGGAGCCTTTTTTTTACTTGATA 780 consensus_10436#2 ------------------------------------------------------------ consensus_10436#1 GTGTCCGACCTTCTGTGTCTCTTACCAAGACCGAGACCGGAGCCTTTTTTTTACTTGATA 607 consensus_10436#0 TTTTGAGGTATAACTATTAATGACAAGTGCACTAGAGTCTTCTTAAACATAGGTCGTTGA 840 consensus_10436#2 ------------------------------------------------------------ consensus_10436#1 TTTGAGGTATAACTATTAATGACAAGTGCACTAGAGTCTTCTTAAACATAAAAAGTTGAA 667 consensus_10436#0 ATGACTGTTTATAGTTGCGAATGTGCTGATACTTTGGTTCAATTTAGCTTCTGGGTACAT 900 consensus_10436#2 ------------------------------------------------------------ consensus_10436#1 TGAAAAAAAAAAAAAAA------------------------------------------- 684 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||