These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10462#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1707 fasta sequence [ACCCCCCACAATTTTTTCTCCTTTTCCACTCTCACACCCCGCCTCCTCTTCCTCGTCACTTCCCAATCCAAAATCCAATCGCGGGGTTGCCAAACCCTAACCCTAGGCACCGCTCGAGGGAGGCGGCGGCGATGGCCGGCGAGGGGAGCGGCGGCGAGGGCGGTGCGGGCGCCTTCGAGGACGAGGCGGAGCCGACGGTCACCATCGGGGAGTACATCGAGGGGATCGAGGCCGAGGAGCTGGAGGCGGATTTGGTGCTGGGCGGGGACGACGGCAAGGAGTGCACCTACGGCGGCGGCTACCTCAAGCGCCAGGCCGTCTTCTCCTGCCTCACCTGCGTGCCAGCGGGTGTCGCTGGAGTCTGCACCGCCTGCAGCCTCGCCTGCCACGACGGCCATGAGGTCGTTGAACTATGGACAAAGCGAAAGTTTCGTTGTGATTGTGGCAACTCAAAGTTTGGAAGTCATGTTTGCAAACTTTGCCCTGAGAAAGATCCAGAGAATCCAGTGAATTCTTATAACCATAAC-TTCAAAGGGTCCTATTGCACATGTGGCAGGCCTTATCCTGATCCAGAAGCTGAAAAGCAAGTTGAAATGATACAATGCTGTATTTGTGAGGATTGGTTCCACGAGGATCATATTGGTCTTAACTCCATTGAAGAGATACCACGAGATGAGGAAGGGGAGCCACTCTACGAGGATTTCATATGCCCCAAATGCTCACCTAAGTGCTATTTCTTGAAATTATATCCGGATACTATTTGGGCATCTAATAAGCAGAGTTCTGCACCACAAGCTGAGACTACCAATTCAACTGTTATGAATGGAAATTCAAG-CCTTGGTGACATAGAGAAAAGTGAAAATGGTGCTCTTATAAATCATTTGAATTGTGAAAAGACCTCTGACAATGAGAATTGCCCAAAAGACAGTGTAGCTCCAGAAAAGGCCAGTCTGGATGACAGTTCTGATGGCAAATGTAAGCTAGGAATGAACATTTGTTCAAATACACCATCAGCTGATTCAGAGAAAAAGATGCCGTTTTTTATGTCAAAAAGCTGGAGAGAGGTTATCTGTAGATGTGAAACTTGCACCGACTTCTATGCACAACAAGGTGTTGCGTACCTTATAGACAAGGAAGACTCTATTGAGGAGTATGAGAAGGTTGCTAAGCAGAAGAGGGAAAAGAAGTTGGAGCAGCAGGAAGGAGTTGAAGCAAACTTTCTTAATTCACTCGACCATGTACAGAAGATTGAGATTTTGAGTGGCATCAATGACATGAAGAATGAGCTTCAGTCTTTTCTGGAAACTTTTGATTCATCAAAACCGGTCACATCTGAAGATATACGAGCTGTTTTTGAGAATCTTGCTAAGAAGAAAAAACAGAGGTTGTCATGAAACTCAGCTGCTTGGGGTTCTGTTTGAGACTAATATATCCCACTGCCGGTCGATCGAGCAGTTTTTCTGGCCACTCCCCCGTGAATTTATCGTTCGCTATGTCATGGCTATTGTGTCCTGTTACCTAGCTTGTACTCGACTTCTAATGTAGTTAGCAGAGGTAGTAATGCTAAATGCTCCGAACTGAGCTTCTGGTAGATGCTCCAGGGCAGCAGAACAAAATGTTTGCTCCTTTGTATCAAATCAAAAGAACTTTGTGACGTGGTAATTTACATTACCCAAAACTGTGAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AK071835 [ACCCCCCACAATTTTTTCTCCTTTTCCACTCTCACACCCCGCCTCCTCTTCCTCGTCACTTCCCAATCCAAAATCCAATCGCGGGGTTGCCAAACCCTAACCCTAGGCACCGCTCGAGGGAGGCGGCGGCGATGGCCGACGAGGGGAGCGGCGGCGAGGGCGGTGCGGGCGCCTTCGAGGACGAGGCGGAGCCGACGGTCACCATCGGGGAGTACATCGAGGGGATCGAGGCCGAGGAGCTGGAGGCGGATTTGGTGCTGGGCGGGGACGACGGCAAGGAGTGCACCTACGGCGGCGGCTACCTCAAGCGCCAGGCCGTCTTCTCCTGCCTCACCTGCGTGCCAGCGGGTGTCGCTGGAGTCTGCACCGCCTGCAGCCTCGCCTGCCACGACGGCCATGAGGTCGTTGAACTATGGACAAAGCGAAAGTTTCGTTGTGATTGTGGCAACTCAAAGTTTGGAAGTCATGTTTGCAAACTTTGCCCTGAGAAAGATCCAGAGAATCCAGTGAATTCTTATAACCATAAC TTCAAAGGGTCCTATTGCACATGTGGCAGGCCTTATCCTGATCCAGAAGCTGAAAAGCAAGTTGAAATGATACAATGCTGTATTTGTGAGGATTGGTTCCACGAGGATCATATTGGTCTTAACTCCATTGAAGAGATACCACGAGATGAGGAAGGGGAGCCACTCTACGAGGATTTCATATGCCCCAAATGCTCACCTAAGTGCTATTTCTTGAAATTATATCCGGATACTATTTGGGCATCTAATAAGCAGAGTTCTGCACCACAAGCTGAGACTACCAATTCAACTGTTATGAATGGAAATTCAAG CCTTGGTGACATAGAGAAAAGTGAAAATGGTGCTCTTATAAATCATTTGAATTGTGAAAAGACCTCTGACAATGAGAATTGCCCAAAAGACAGTGTAGCTCCAGAAAAGGCCAGTCTGGATGACAGTTCTGATGGCAAATGTAAGCTAGGAATGAACATTTGTTCAAATACACCATCAGCTGATTCAGAGAAAAAGATGCCGTTTTTTATGTCAAAAAGCTGGAGAGAGGTTATCTGTAGATGTGAAACTTGCACCGACTTCTATGCACAACAAGGTGTTGCGTACCTTATAGACAAGGAAGACTCTATTGAGGAGTATGAGAAGGTTGCTAAGCAGAAGAGGGAAAAGAAGTTGGAGCAGCAGGAAGGAGTTGAAGCAAACTTTCTTAATTCACTCGACCATGTACAGAAGATTGAGATTTTGAGTGGCATCAATGACATGAAGAATGAGCTTCAGTCTTTTCTGGAAACTTTTGATTCATCAAAACCGGTCACATCTGAAGATATACGAGCTGTTTTTGAGAATCTTGCTAAGAAGAAAAAACAGAGGTTGTCATGAAACTCAGCTGCTTGGGGTTCTGTTTGAGACTAATATATCCCACTGCCGGTCGATCGAGCAGTTTTTCTGGCCACTCCCCCGTGAATTTATCGTTCGCTATGTCATGGCTATTGTGTCCTGTTACCTAGCTTGTACTCGACTTCTAATGTAGTTAGCAGAGGTAGTAATGCTAAATGCTCCGAACTGAGCTTCTGGTAGATGCTCCAGGGCAGCAGAACAAAATGTTTGCTCCTTTGTATCAAATCAAAAGAACTTTGTGACGTGGT ] [+] EMBL CB640247 [ AATCGCGGGGTTGCCAAACCCTAACCCTAGGCACCGCTCGAGGGAGGCGGCGGCGATGGCCGGCGAGGGGAGCGGCGGCGAGGGCGGTGCGGGCGCCTTCGAGGACGAGGCGGAGCCGACGGTCACCATCGGGGAGTACATCGAGGGGATCGAGGCCGAGGAGCTGGAGGCGGATTTGGTGCTGGGCGGGGACGACGGCAAGGAGTGCACCTACGGCGGCGGCTACCTCAAGCGCCAGGCCGTCTTCTCCTGCCTCACCTGCGTGCCAGCGGGTGTCGCTGGAGTCTGCACCGCCTGCAGCCTCGCCTGCCACGACGGCCATGAGGTCGTTGAACTATGGACAAAGCGAAAGTTTCGTTGTGATTGTGGCAACTCAAAGTTTGGAAGTCATGTTTGCAAACTTTGCCCTGAGAAAGATCCAGAGAATCCAGTGAATTCTTATAACCATAACTTTCAAA GGTCCTA ] [+] EMBL CB684038 [ AGGCACCGCTCGAGGGAGGCGGCGGCGATGGCCGGCGAGGGGAGCGGCGGCGAGGGCGGTGCGGGCGCCTTCGAGGACGAGGCGGAGCCGACGGTCACCATCGGGGAGTACATCGAGGGGATCGAGGCCGAGGAGCTGGAGGCGGATTTGGTGCTGGGCGGGGACGACGGCAAGGAGTGCACCTACGGCGGCGGCTACCTCAAGCGCCAGGCCGTCTTCTCCTGCCTCACCTGCGTGCCAGCGGGTGTCGCTGGAGTCTGCACCGCCTGCAGCCTCGCCTGCCACGACGGCCATGAGGTCGTTGAACTATGGACAAAGCGAAAGTTTCGTTGTGATTGTGGCAACTCAAAGTTTGGAAGTCATGTTTGCAAACTTTGCCCTGAGAAAGATCCAGAGAATCCAGTGAATTCTTATAACCATAAC TTCAAAGGGTCCTATTGCACATGTGGCAGGCCTTATCCTGATCCAGAAGCTGAAAAGCAAGTTGAAATGATACAATGCTGTATTTGTGAGGATTGGTTCCACGAGGATCATATTGGTCTTAACTCCATTGAAGAGATACCACGAGATGAGGAAGGGGAGCCACTCTACGAGGATTTCATATGCCCCAAATGCTCACCTAAGTGCTATTTCTTGAAATTATATCCGGATACTATTTGGGCATCTAATAAGCAGAGTTCTGCACCACAAGCTGAGACTACCAATTCAACTGTTATGAATGGAAATTCAAG CCTTGGTGACATAGAGAAAAGTGAAAATGGTGCTCTTAT AATCATTTGAATTGTGAAAAGACCTCTGACAATGA ] [-] EMBL CB684039 [ GAATGGAAATTCAAGCCCTTGGTGACATAGAGAAAAGTGAAAATGGTGCTCTTATAAATCATTTGAATTGTGAAAAGACCTCTGACAATGAGAATTGCCCAAAAGACAGTGTAGCTCCAGAAAAGGCCAGTCTGGATGACAGTTCTGATGGCAAATGTAAGCTAGGAATGAACATTTGTTCAAATACACCATCAGCTGATTCAGAGAAAAAGATGCCGTTTTTTATGTCAAAAAGCTGGAGAGAGGTTATCTGTAGATGTGAAACTTGCACCGACTTCTATGCACAACAAGGTGTTGCGTACCTTATAGACAAGGAAGACTCTATTGAGGAGTATGAGAAGGTTGCTAAGCAGAAGAGGGAAAAGAAGTTGGAGCAGCAGGAAGGAGTTGAAGCAAACTTTCTTAATTCACTCGACCATGTACAGAAGATTGAGATTTTGAGTGGCATCAATGACATGAAGAATGAGCTTCAGTCTTTTCTGGAAACTTTTGATTCATCAAAACCGGTCACATCTGAAGATATACGAGCTGTTTTTGAGAATCTTGCTAAGAAGAAAAAACAGAGGTTGTCATGAAACTCAGCTGCTTGGGGTTCTGTTTGAGACTAATATATCCCACTGCCGGTCGATCGAGCAGTTTTTCTGGCCACTCCCCCGTGAATTTATCGTTCGCTATGTCATGGCTATTGTGTCCTGTTACCTAGCTTGTACTCGACTTCTAATGTAGTTAGCAGAGGTAGTAATGCTAAATGCTCCGAACTGAGCTTCTGGTAGATGCTCCAGGGCAGCAGAACAAAATGTTTGCTCCTTTGTATCAGATCAAAAGAACTTTGTGACGTGGTAATTTAC ] [+] EMBL OS0133A [ ACCGACTTCTATGCACAACAAGGTGTTGCGTACCTTATAGACAAGGAAGACTCTATTGAGGAGTATGAGAAGGTTGCTAAGCAGAAGAGGGAAAAGAAGTTGGAGCAGCAGGAAGGAGTTGAAGCAAACTTTCTTAATTCACTCGACCATGTACAGAAGATTGAGATTTTGAGTGGCATCAATGACATGAAGAATGAGCTTCAGTCTTTTCTGGAAACTTTTGATTCATCAAAACCGGTCACATCTGAAGATATACGAGCTGTTTTTGAGAATCTTGCTAAGAAGAAAAAACAGAGGTTGTCATGAAACTCAGCTGCTTGGGGTTCTGTTTGAGACTAATATATCCCACTGCCGGTCGATCGAGCAGTTTTTCTGGCCACT CCCCGTGAA TTATCGTTCG TATGTCATGGCTATTG ] [+] EMBL CA882794 [ CTAATGTAGTTAGCAGAGGTAGTAATGCTAAATGCTCCGAACTGAGCTTCTGGTAGATGCTCCAGGGCAGCAGAACAAAATGTTTGCTCCTTTGTATCAAATCAAAAGAACTTTGTGACGTGGTAATTTACATTACCCAAAACTGTGAAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_10462#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 555 fasta sequence [AGCCAGCCAGGAAGGAGTTGAAGCAAACTTTCTTAATTCCACTCGACCATGTACAGAAGATTGAGATTTTGAGTGGCATCAATGACATGAAGAATGAGCTTCAGTCTTTTCTGGAAACTTTTGATTCATCAAAACCGGTCACATCTGAAGATATACGAGCTGTTTTTGAGAATCTTGCTAAGAAGAAAAAACAGAGGTTGTCATGAAACTCAGCTGCTTGGGGTTCTGTTTGAGACTAATATATCCCACTGCCCGGTCGATCGAGCAGTTTTTCTGGCCACTCCCCCGTGAATTTATCGTTCGCTATGTCATGGCTATTGTGTCCTGTTACCTAGCTTGTACTCGACTTCTAATGTAGTTAGCAGAGGTAGTAATGCTAAATGCTCCGAACTGAGCTTCTGGTAGATGCTCCAGGGCAGCAGAACAAAATGTTTGCTCCTTTGTATCAAATCAAAAGAACTTTGTGACGTGGTAATTTACATTACCCAAAACCGTGTAACCCTTTGTGCCGCTCCTTTAATCATCTGTTGCCTATGTGCTATTTGTGCTTAAAAA] [+] EMBL C97926 [AGCCAGCCAGGAAGGAGTTGAAGCAAACTTTCTTAATTCCACTCGACCATGTACAGAAGATTGAGATTTTGAGTGGCATCAATGACATGAAGAATGAGCTTCAGTCTTTTCTGGAAACTTTTGATTCATCAAAACCGGTCACATCTGAAGATATACGAGCTGTTTTTGAGAATCTTGCTAAGAAGAAAAAACAGAGGTTGTCATGAAACTCAGCTGCTTGGGGTTCTGTTTGAGACTAATATATCCCACTGCCCGGTCGATCGAGCAGTTTTTCTGGCCACTCCCCCGTGAATTTATCGTTCGCTATGTCATGGCTATTGTGTCCTGTTACCTAGCTTGTACTCGACTTCTAATGTAGTTAGCAGAGGTAGTAATGCTAAATGCTCCGAACTGAGCTTCTGGTAGATGCTCCAGGGCAGCAGAACAAAATGTTTGCTCCTTTGTATCAAATCAAAAGAACTTTGTGACGTGGTAATTTACATTACCCAAAACCGTGTAACCCTTTGTGCCGCTCCTTTAATCATCTGTTGCCTATGTGCTATTTGTGCTTAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10462#0 ACCCCCCACAATTTTTTCTCCTTTTCCACTCTCACACCCCGCCTCCTCTTCCTCGTCACT 60 consensus_10462#1 ------------------------------------------------------------ consensus_10462#0 TCCCAATCCAAAATCCAATCGCGGGGTTGCCAAACCCTAACCCTAGGCACCGCTCGAGGG 120 consensus_10462#1 ------------------------------------------------------------ consensus_10462#0 AGGCGGCGGCGATGGCCGGCGAGGGGAGCGGCGGCGAGGGCGGTGCGGGCGCCTTCGAGG 180 consensus_10462#1 ------------------------------------------------------------ consensus_10462#0 ACGAGGCGGAGCCGACGGTCACCATCGGGGAGTACATCGAGGGGATCGAGGCCGAGGAGC 240 consensus_10462#1 ------------------------------------------------------------ consensus_10462#0 TGGAGGCGGATTTGGTGCTGGGCGGGGACGACGGCAAGGAGTGCACCTACGGCGGCGGCT 300 consensus_10462#1 ------------------------------------------------------------ consensus_10462#0 ACCTCAAGCGCCAGGCCGTCTTCTCCTGCCTCACCTGCGTGCCAGCGGGTGTCGCTGGAG 360 consensus_10462#1 ------------------------------------------------------------ consensus_10462#0 TCTGCACCGCCTGCAGCCTCGCCTGCCACGACGGCCATGAGGTCGTTGAACTATGGACAA 420 consensus_10462#1 ------------------------------------------------------------ consensus_10462#0 AGCGAAAGTTTCGTTGTGATTGTGGCAACTCAAAGTTTGGAAGTCATGTTTGCAAACTTT 480 consensus_10462#1 ------------------------------------------------------------ consensus_10462#0 GCCCTGAGAAAGATCCAGAGAATCCAGTGAATTCTTATAACCATAACTTCAAAGGGTCCT 540 consensus_10462#1 ------------------------------------------------------------ consensus_10462#0 ATTGCACATGTGGCAGGCCTTATCCTGATCCAGAAGCTGAAAAGCAAGTTGAAATGATAC 600 consensus_10462#1 ------------------------------------------------------------ consensus_10462#0 AATGCTGTATTTGTGAGGATTGGTTCCACGAGGATCATATTGGTCTTAACTCCATTGAAG 660 consensus_10462#1 ------------------------------------------------------------ consensus_10462#0 AGATACCACGAGATGAGGAAGGGGAGCCACTCTACGAGGATTTCATATGCCCCAAATGCT 720 consensus_10462#1 ------------------------------------------------------------ consensus_10462#0 CACCTAAGTGCTATTTCTTGAAATTATATCCGGATACTATTTGGGCATCTAATAAGCAGA 780 consensus_10462#1 ------------------------------------------------------------ consensus_10462#0 GTTCTGCACCACAAGCTGAGACTACCAATTCAACTGTTATGAATGGAAATTCAAGCCTTG 840 consensus_10462#1 ------------------------------------------------------------ consensus_10462#0 GTGACATAGAGAAAAGTGAAAATGGTGCTCTTATAAATCATTTGAATTGTGAAAAGACCT 900 consensus_10462#1 ------------------------------------------------------------ consensus_10462#0 CTGACAATGAGAATTGCCCAAAAGACAGTGTAGCTCCAGAAAAGGCCAGTCTGGATGACA 960 consensus_10462#1 ------------------------------------------------------------ consensus_10462#0 GTTCTGATGGCAAATGTAAGCTAGGAATGAACATTTGTTCAAATACACCATCAGCTGATT 1020 consensus_10462#1 ------------------------------------------------------------ consensus_10462#0 CAGAGAAAAAGATGCCGTTTTTTATGTCAAAAAGCTGGAGAGAGGTTATCTGTAGATGTG 1080 consensus_10462#1 ------------------------------------------------------------ consensus_10462#0 AAACTTGCACCGACTTCTATGCACAACAAGGTGTTGCGTACCTTATAGACAAGGAAGACT 1140 consensus_10462#1 ------------------------------------------------------------ consensus_10462#0 CTATTGAGGAGTATGAGAAGGTTGCTAAGCAGAAGAGGGAAAAGAAGTTGGAGCAGC-AG 1199 consensus_10462#1 --------------------------------------------------AGCCAGCCAG 10 **** ** consensus_10462#0 GAAGGAGTTGAAGCAAACTTTCTTAATTC-ACTCGACCATGTACAGAAGATTGAGATTTT 1258 consensus_10462#1 GAAGGAGTTGAAGCAAACTTTCTTAATTCCACTCGACCATGTACAGAAGATTGAGATTTT 70 ***************************** ****************************** consensus_10462#0 GAGTGGCATCAATGACATGAAGAATGAGCTTCAGTCTTTTCTGGAAACTTTTGATTCATC 1318 consensus_10462#1 GAGTGGCATCAATGACATGAAGAATGAGCTTCAGTCTTTTCTGGAAACTTTTGATTCATC 130 ************************************************************ consensus_10462#0 AAAACCGGTCACATCTGAAGATATACGAGCTGTTTTTGAGAATCTTGCTAAGAAGAAAAA 1378 consensus_10462#1 AAAACCGGTCACATCTGAAGATATACGAGCTGTTTTTGAGAATCTTGCTAAGAAGAAAAA 190 ************************************************************ consensus_10462#0 ACAGAGGTTGTCATGAAACTCAGCTGCTTGGGGTTCTGTTTGAGACTAATATATCCCACT 1438 consensus_10462#1 ACAGAGGTTGTCATGAAACTCAGCTGCTTGGGGTTCTGTTTGAGACTAATATATCCCACT 250 ************************************************************ consensus_10462#0 GCC-GGTCGATCGAGCAGTTTTTCTGGCCACTCCCCCGTGAATTTATCGTTCGCTATGTC 1497 consensus_10462#1 GCCCGGTCGATCGAGCAGTTTTTCTGGCCACTCCCCCGTGAATTTATCGTTCGCTATGTC 310 *** ******************************************************** consensus_10462#0 ATGGCTATTGTGTCCTGTTACCTAGCTTGTACTCGACTTCTAATGTAGTTAGCAGAGGTA 1557 consensus_10462#1 ATGGCTATTGTGTCCTGTTACCTAGCTTGTACTCGACTTCTAATGTAGTTAGCAGAGGTA 370 ************************************************************ consensus_10462#0 GTAATGCTAAATGCTCCGAACTGAGCTTCTGGTAGATGCTCCAGGGCAGCAGAACAAAAT 1617 consensus_10462#1 GTAATGCTAAATGCTCCGAACTGAGCTTCTGGTAGATGCTCCAGGGCAGCAGAACAAAAT 430 ************************************************************ consensus_10462#0 GTTTGCTCCTTTGTATCAAATCAAAAGAACTTTGTGACGTGGTAATTTACATTACCCAAA 1677 consensus_10462#1 GTTTGCTCCTTTGTATCAAATCAAAAGAACTTTGTGACGTGGTAATTTACATTACCCAAA 490 ************************************************************ consensus_10462#0 ACTGTGAAAAAAAAAAAAAAAAAAAAAAAA------------------------------ 1707 consensus_10462#1 ACCGTGTAACCCTTTGTGCCGCTCCTTTAATCATCTGTTGCCTATGTGCTATTTGTGCTT 550 ** *** ** ** consensus_10462#0 ----- consensus_10462#1 AAAAA 555 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||