These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10465#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1122 fasta sequence [TTTTTTTTCTGTAAATGCTGGGTTTATACCATCTTGACACCAATACTTGGTCATGACAAACAAATTAAGAAAAAAGAAAAAAGAAAAAAATAGTCTTTTTTTTTTGTTGCAATCTTCACTTATTTGAACCTTCATTCATATTTGAGGCGTCCATGGCACTGGTAAGTCGAAACTGTATCAGACTGCAGATTCATGGTTTTTACTATGCTATCTACAAATATACTAAAATTTTACAAATGTTGAACATATTCCCCTCAACACATATTGCACATTCCTGTGACCTTCCAATGTAGAAGCATTTAAGTTCATTTGTTCAGTGAACATTAATTACAAGCTGCTGGTGCTGCTCCTGGCCACTCATACTGTGCAAGTTTGATGCGTTTCTTCTCCGTTGATCCTGAAGCAGCTGCAACCGAAACTGTCGTTGGCCCTGCTGAATCATGCGGACCATCCGCATGATAGCATAGAACGGCAACAAGATTCCAGCAGCCCGAAGTAAGAATATTGTGACAAGGCTGAATGCACAGTGATCCGCCGCTTCAATTGTCACCACTGCAATGAGATGCCACACCAGCAGCATAATGGTGAACGTTATCGTCAATGATCGGCACCA-TGAGG-AGCAGTCTCCATTAC-CCGTCTGCGCCTCGGATCCTGCATACTGC-TCCTGATCCTCCTGAGAGAGTTCCTCAGGGAGCATCTCCTCGTCTCTGACAGTGACTGCCGTTTCAACAACCTGCACTTTCTTGGGAGGGATGGTGTAATCTGACTCAAAATTCTGGAGGCAAATCTCACAGAGTGTGCTCCCCTTCTCATCACACCACCTCTGCACACATCCCCTGTGAGCATACTTGAGAGAGCCAGAGCATCCACAGGGGGACTCAATTGCAGCGCACCACTCATCCTCCTCCTCATGGCAAATCCTGCACTGCCTCAGCAGCGAGGACGAGGACGATGACGAAGACGAAGAAGAAAACGAAGGAGAAGAGGGTTCAGAAGAGGAAGAGGAAGAAGAAAGCTCATGCTATTCCATCACTTCCTCTCCTCCTCAATTCCTTCCAATACCTTGCTTTCTTGGCTGCTCAATAAGATATGCTCTGCTGCTGCTTTCTCTCACCCTCTCCC] [+] EMBL CF309035 [TTTTTTTTCTGTAAATGCTGGGTTTATACCATCTTGACACCAATACTTGGTCATGACAAACAAATTAAGAAAAAAGAAAAAAGAAAAAAATAGTCTTTTTCTTTTGTTGCAATCTTCACTTATTTGAACCTTCATTCATATTTGAGGCGTCCATGGCACTGGTAAGTCGAAACTGTATCAGACTGCAGATTCATGGTTTTTACTATGCTATCTACAAATATACTAAAATTTTACAAATGTTGAACATATTCCCCTCAACACATATTGCACATTCCTGTGACCTTCCAATGTAGAAGCATTTAAGTTCATTTGTTCAGTGAACATTAATTACAAGCTGCTGGTGCTGCTCCTGGCCACTCATACTGTGCAAGTTTGATGCGTTTCTTCTC ] [+] EMBL CF308952 [ TTTTTTTTGTTGCAATCTTCACTTATTTGAACCTTCATTCATATTTGAGGCGTCCATGGCACTGGTAAGTCGAAACTGTATCAGACTGCAGATTCATGGCTTTTACTATGCTATCTACAAATATACTAAAATTTTACAAATGTTGAACATATTCCCCTCAACACATATTGCACATTCCTGTGACCTTCCAATGTAGAAGCATTTAAGTTCATTTGTTTAGCGAACATTAATTACAAGCTGCTGGTGCTGCTCCTGGCCACTCATACTGTGCAAGTTTGATGCGTTTCTTCTCCGTTGATCCTGAAGCAGCTGCAACCGAAACTGTCGTTGGCCCTGCTGAATCATGCGGACCATCCGCATGATAGCATAGAACGGCAACAAGATTCCAGCAGCCCGAAGTAAGAATATTGTGACAAGGCTGAATGCACAGTGATCCGCCGCTTCAATTGTCACCACTGCAATGAGATGCCACACCAGCAGCATAATGGTGAACGTTATCGTCAATGATCGGCACCA TGAGG AGCAGTCTCCATTAC CCGTCTGCGCCTCGGATCCTGCAT ] [+] EMBL CA763420 [ TTTTTTTTTGCAATCTTCACTTATTTGAACCTTCATTCATATTTGAGGCGTCCATGGCACTGGTAAGTCGAAACTGTATCAGACTGCAGATTCATGGTTTTTACTATGCTATCTACAAATATACTAAAATTTTACAAATGTTGAACATATTCCCCTCAACACATATTGCACATTCCTGTGACCTTCCAATGTAGAAGCATTTAAGTTCATTTGTTCAGTGAACATTAATTACAAGCTGCTGGTGCTGCTCCTGGCCACTCATACTGTGCAAGTTTGATGCGTTTCTTCTCCGTTGATCCTGAAGCAGCTGCAACCGAAACTGTCGTTGGCCCTGCTGAATCATGCGGACCATCCGCATGATAGCATAGAACGGCAACAAGATTCCAGCAGCCCGAAGTAAGAACATTGTGACAAGGCTGAATGCACAGTGATCCGCCGCTTCAATTGTCACCACTGCAATGAGATGCCACACCAGCAGCATAATGGTGAACGTTATCGTCAATGATCGGCACCA TGAGG AGCAGTCTCCATTAC CCGTCTGCGCCTCGGATCCTGCATACTGC TCCTGATCCTCCTGAGAGAGTTCCTCAGGGAGCATCTCCTCGTCTCTGACAGGGACTGCCGTTTCAACAGCCTGCACTTTCTTGGGAGGGATGGTGTAATCTGACTCAAAATTCTGGAG ] [-] EMBL CF309034 [ TGATAGCATAGAACGGCAACAAGATTCCAGCAGCCCGAAGTAAGAATATTGTGACAAGGCTGAATGCACAGTGATCCGCCGCTTCAATTGTCACCACTGCAATGAGATGCCACACCAGCAGCATAATGGTGAACGTTATCGTCAATGATCGGCACCA TGAGG AGCAGTCTCCATTAC CCGTCTGCGCCTCGGATCCTGCATACTGC TCCTGATCCTCCTGAGAGAGTTCCTCAGGGAGCATCTCCTCGTCTCTGACAGTGACTGCCGTTTCAACAACCTGCACTTTCTTGGGAGGGATGGTGTAATCTGACTCAAAATTCTGGAGGCAAATCTCACAGAGTGTGCTCCCCTTCTCATCACACCACCTCTGCACACATCCCCTGTGAGCATACTTGAGAGAGCCAGAGCATCCACAGGGGGACTCAATTGCAGCGCACCACTCATCCTCCTCCTCATGGCAAATCCTGCACTGCCTCAGCAGCGAGGACGAGGACGACGACGAAGACGAAGAAGAAAACGAAGGAGAAGAGGGTTCAGAAGAGGAAGAGGAAGAAGAAAGCTCATGCTATTCCATCACTTCCTCTCCTCCTCAATTCCTTCCAATACCTTGCTTTCTTGGCTGCTCAATAAGATATGCTCTGCTGCTGCTTTCTCTCACC ] [-] EMBL OS1321606 [ ACTGCAATGAG TGCCACACCAG AGCATAATGGTGAACGTTATCGTCAATGA CGGCACCATTGAGGAAGNAGTCTCCATTACNCCGTTTGCGNCTCGGATCCTGCATACTGCTTCCTGATCCTCCTGAGAGAGTTCCTCAGGGAGCATCTCCTCGTCTCTGACAGTGACTGCCGTTTCAACAACCTGCACTTTCTTGGGAGGGATGGTGTAATCTGACTNAAAATTCTGGAGGCAAATCTCACAGAGTGTGCTCCCCTTCTCATCACACCACCTCTGCACACATCCCCTGTGAGCATACTTGAGAGAGCCAGAGCATCCACAGGGGGACTCAATTGCAGCGCACCACTCATCCTCCTCCTCATGGCAAATCCTGCACTGCCTCAGCAGCGAGGACGAGGACGATGACGAAGACGAAGna ] [-] EMBL CF308951 [ CTCAGGGAGCATCTCCTCGTCTCTGACAGTGACTGCCGTTTCAACAACCTGCACTTTCTTGGGAGGGATGGTGTAATCTGACTCAAAATTCTGGAGGCAAATCTCACAGAGTGTGCTCCCCTTCTCATCACACCACCTCTGCACACATCCCCTGTGAGCATACTTGAGAGAGCCAGAGCATCCACAGGGGGACTCAATTGCAGCGCACCACTCATCCTCCTCCTCATGGCAAATCCTGCACTGCCTCAGCAGCGAGGACGAGGACGATGACGAAGACGAAGAAGAAAACGAAGGAGAAGAGGGTTCAGAAGAGGAAGAGGAAGAAGAAAGCTCATGCTGTTCCATCACTTCCTCTCCTCCTCAATTCCTTCCAATACCTTGCTTTCTTGGCTGCTCAATAAGATATGCTCTGCTGCTGCTTTCTCTCACCCTCTCCC] consensusID : consensus_10465#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 752 fasta sequence [CTGTTNCCTTTATCCTCTAAACATANTGTTGCACAGCTNGCTCATAATTACNAAGTCATAAAATAACCAAGAANAAAGGANCTAGCTGTTTGGCACCTTTCCTGCACAAATTTCACCCTTTTCTAGGCTAACCTCAATAANAGTGGCTAGNTGTTTTCACATTATACACGAATAGGTCATATGGTACANTAATGATCGANCTCAAACTTTCACAAAGAAGAGCNTACCTGNAGGCAAATCTCACAGAGTGTGCTCCCCTTCTCATCNCTCCNCCTCTGCACACATNCCCTGTGAGCATNCTGCACATGCACAAATTANCAAACNCAANCCATAACCACATCNTTTTAGCCTGCTAGCAANCTAGTANATTAATCATCACAAGAACCATATCATGCATGTANCANCTACAAGAAATGCAGGGAAGGATCATGGATGGATGATCACTTGATCAGCTTGTANCTTTGTACCTACCTTGAGAGAGCCAGAGCATCCACAGGGGGACTCAATTGCAGCGCACCACTCATCCTCCTCCTCATGGCAAATCCTGCNCTGCCTCAGCAGCGAGGACGAGGACGATGACGAAGACGAAGAAGAAAACGAAGGAGAAGAGGGTTCAGAAGAGGAAGAGGAAGAAGAAAGCTCATGCTGTTCCATCACTTCCTCTCCTCCTCAATTCCTTCCAATACCTTGCTTTNTTGGCTGTTCAATAAGATACGCTCTGCTGCTGCTTTCTCTCACCCTCTCCCCCCCCN] [-] EMBL CB096523 [CTGTTNCCTTTATCCTCTAAACATANTGTTGCACAGCTNGCTCATAATTACNAAGTCATAAAATAACCAAGAANAAAGGANCTAGCTGTTTGGCACCTTTCCTGCACAAATTTCACCCTTTTCTAGGCTAACCTCAATAANAGTGGCTAGNTGTTTTCACATTATACACGAATAGGTCATATGGTACANTAATGATCGANCTCAAACTTTCACAAAGAAGAGCNTACCTGNAGGCAAATCTCACAGAGTGTGCTCCCCTTCTCATCNCTCCNCCTCTGCACACATNCCCTGTGAGCATNCTGCACATGCACAAATTANCAAACNCAANCCATAACCACATCNTTTTAGCCTGCTAGCAANCTAGTANATTAATCATCACAAGAACCATATCATGCATGTANCANCTACAAGAAATGCAGGGAAGGATCATGGATGGATGATCACTTGATCAGCTTGTANCTTTGTACCTACCTTGAGAGAGCCAGAGCATCCACAGGGGGACTCAATTGCAGCGCACCACTCATCCTCCTCCTCATGGCAAATCCTGCNCTGCCTCAGCAGCGAGGACGAGGACGATGACGAAGACGAAGAAGAAAACGAAGGAGAAGAGGGTTCAGAAGAGGAAGAGGAAGAAGAAAGCTCATGCTGTTCCATCACTTCCTCTCCTCCTCAATTCCTTCCAATACCTTGCTTTNTTGGCTGTTCAATAAGATACGCTCTGCTGCTGCTTTCTCTCACCCTCTCCCCCCCCN] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10465#0 TTTTTTTTCTGTAAATGCTGGGTTTATACCATCTTGACACCAATACTTGGTCATGACAAA 60 consensus_10465#1 ------------------------------------------------------------ consensus_10465#0 CAAATTAAGAAAAAAGAAAAAAGAAAAAAATAGTCTTTTTTTTTTGTTGCAATCTTCACT 120 consensus_10465#1 ------------------------------------------------------------ consensus_10465#0 TATTTGAACCTTCATTCATATTTGAGGCGTCCATGGCACTGGTAAGTCGAAACTGTATCA 180 consensus_10465#1 ------------------------------------------------------------ consensus_10465#0 GACTGCAGATTCATGGTTTTTACTATGCTATCTACAAATATACTAAAATTTTACAAATGT 240 consensus_10465#1 ------------------------------------------------------------ consensus_10465#0 TGAACATATTCCCCTCAACACATATTGCACATTCCTGTGACCTTCCAATGTAGAAGCATT 300 consensus_10465#1 ------------------------------------------------------------ consensus_10465#0 TAAGTTCATTTGTTCAGTGAACATTAATTACAAGCTGCTGGTGCTGCTCCTGGCCACTCA 360 consensus_10465#1 -------------------------------------CTGTTNCCTTTATCCTCTAAACA 23 *** * * * * * ** consensus_10465#0 TACTGT-GCAAGTTTGATGCGTTTCTTCTCCGTTGATCCTGAAGCAGCTGCAACCGAAAC 419 consensus_10465#1 TANTGTTGCACAGCTNGCTCATAATTACNAAGTCATAAAATAACCAAGAANAAAGGANCT 83 ** *** *** * * * * * ** ** ** ** ** consensus_10465#0 TGTCGTTGGCCCTGCTGAATCATGCGGACCATCCGCATGATAGCATAGAACGGCAACAAG 479 consensus_10465#1 AGCTGTTTGGCACCTT---TCCTGC--ACAAATTTCACCCTTTTCTAGGCTAACCTCAAT 138 * *** * * * ** *** ** * ** * *** * *** consensus_10465#0 ATTCCAGCAGCCCGAAGTAAGAATATTGTGACAAGGCTGAATGCACAGTGATCCGCCGCT 539 consensus_10465#1 AA--NAGTGGCTAGNTGTTTTCACATTATACACGAATAGGTCATATGGTACANTAATGAT 196 * ** ** * ** * *** * * * ** * * consensus_10465#0 TCAATTGTCACCACTGCAATGAGATGCCACACCAGCAGCATAATGGTGAACGTTATCGTC 599 consensus_10465#1 CGANCTCAAACTTTCACAAAGAAGAGCN-TACCTGNAG-------GCAAATCTCACAGAG 248 * * ** *** ** ** *** * ** * ** * * * consensus_10465#0 AATGATCGGCACCATGAGGAGCAGTCTCCATTACCCGTCTGCGCCTCGGATCCTGCATAC 659 consensus_10465#1 TGTGCTCCCCTTCTCATCNCTCCNCCTCTGC-ACACATNCCCTGTGAGCATNCTGCACA- 306 ** ** * * * *** ** * * * * ** ***** * consensus_10465#0 TGCTCCTGATCCTCCTGAGAGAGTTCCTCAGGGAGCATCTCCTCGTCTCTGACAGTGAC- 718 consensus_10465#1 TGCAC---AAATTANCAAACNCAANCCATAACCA-CATCNTTTTAGC-CTGCTAGCAANC 361 *** * * * * ** * * **** * * *** ** * consensus_10465#0 TGCCGTTTCAACAACCTGCACTTTCTTGGGAGGGATGGTGTAATCTGACTCAAAATTCTG 778 consensus_10465#1 TAGTANATTAATCATCACAAGAACCATATCATGCATG-TANCANCT-ACAAGAAAT---G 416 * * ** * * * * * * * *** * * ** ** **** * consensus_10465#0 GAGGCAAATCTCACAGA-GTGTGCTCCCCTTCTCATCACACCACCTCTGCACACATCCCC 837 consensus_10465#1 CAGGGAAGGATCATGGATGGATGATCACTTGATCAGCTTGT-ANCTTTGTACCTACC--- 472 *** ** *** ** * ** ** * * *** * * ** ** ** * * consensus_10465#0 TGTGAGCATACTTGAGAGAGCCAGAGCATCCACAGGGGGACTCAATTGCAGCGCACCACT 897 consensus_10465#1 -----------TTGAGAGAGCCAGAGCATCCACAGGGGGACTCAATTGCAGCGCACCACT 521 ************************************************* consensus_10465#0 CATCCTCCTCCTCATGGCAAATCCTGCACTGCCTCAGCAGCGAGGACGAGGACGATGACG 957 consensus_10465#1 CATCCTCCTCCTCATGGCAAATCCTGCNCTGCCTCAGCAGCGAGGACGAGGACGATGACG 581 *************************** ******************************** consensus_10465#0 AAGACGAAGAAGAAAACGAAGGAGAAGAGGGTTCAGAAGAGGAAGAGGAAGAAGAAAGCT 1017 consensus_10465#1 AAGACGAAGAAGAAAACGAAGGAGAAGAGGGTTCAGAAGAGGAAGAGGAAGAAGAAAGCT 641 ************************************************************ consensus_10465#0 CATGCTATTCCATCACTTCCTCTCCTCCTCAATTCCTTCCAATACCTTGCTTTCTTGGCT 1077 consensus_10465#1 CATGCTGTTCCATCACTTCCTCTCCTCCTCAATTCCTTCCAATACCTTGCTTTNTTGGCT 701 ****** ********************************************** ****** consensus_10465#0 GCTCAATAAGATATGCTCTGCTGCTGCTTTCTCTCACCCTCTCCC------ 1122 consensus_10465#1 GTTCAATAAGATACGCTCTGCTGCTGCTTTCTCTCACCCTCTCCCCCCCCN 752 * *********** ******************************* |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||