These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10480#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1018 fasta sequence [CGCGCGCGCGCGCGGCGCGGGTGGTTTACGCAAGCTGAGCTGCCGCCGCGCGGCTTGCTAGTTAGCGTCAAATCGATCGGTTCGAGCCCTGCAATAGGAGTCCCACGCAAGCAACTCCTTCCTCCTCTTAACCACGCCCTCTCTCACCGTCGTCTTCCTCAATTCCCTCTACCCCTCACCGCCCGCACGCGCGCGCTGCCTAGCTAACACAAACCGCCATTGCTTCCCCTCCTCCTCCTTGCCGCCGTGCTTAGCTTGCTGTTTGTAGCTTGTTGGCTAGAGAGGTCGTCGTACGCCGGTGGCTGGCGATCGCCGGCCGGCCGGTGGTCCATGACTAACGGTGCCGCGAGCTGCCAGCCTGC-AGCGC-GGTGGACATGAGCCGGCGACTCGGCGCCGCGGCTG-CGTCCTCCTCCTGTGGCTCGCCGTGCTCACCTTCGCCTTCCACGGCTACTACGGCGGCCGCCTCGGCTCCGCGAGGCGGCGGAATATCCTCCTCCAACACCCGGCGCTAGCGCTCCATCTCCCCACCAGGAAGATGCTCCTCGCCGTGGCGAGCTTCGACGACGCCTCCTCGCCATCGTCGTTGACGACCACCGATCGTCATCATCACCATCACAGGCATCATGGCCACCACCATCATCGCGGCCATG-ATCGGTGGAACAGG-AAGGGTGTCCCGCC-G-ACGGCAGCTGGGCC-GGGCG-AGG-AGGTCG-ACCCGCGGTTCGGCGTGCAG-AAG-AGGCTGGTCCCGACGGGCCCCAACCCCCTGCACCATTGATGCCGGCGGCTCGCCATTGATGGGTGCTCGAGTTTTTCTGCGGTGAGTCACGCGCACATATACACTACTACACCGTTCTTGTTGTGTTCAT-CGATCGACCAAAGGCTAGCTAGCTAGCTAGCACAGTAATATTGATTCCAATTCCAACCTGTGGATGAATTCAAGAAAGCATTGCCGATGTGTGTGTGCTCTTGCATGTATGTACCACGATCATATCAGAAAGCTTCAAAACAAGAGGAGAAAAAGAAA] [+] EMBL AK061156 [CGCGCGCGCGCGCGGCGCGGGTGGTTTACGCAAGCTGAGCTGCCGCCGCGCGGCTTGCTAGTTAGCGTCAAATCGATCGGTTCGAGCCCTGCAATAGGAGTCCCACGCAAGCAACTCCTTCCTCCTCTTAACCACGCCCTCTCTCACCGTCGTCTTCCTCAATTCCCTCTACCCCTCACCGCCCGCACGCGCGCGCTGCCTAGCTAACACAAACCGCCATTGCTTCCCCTCCTCCTCCTTGCCGCCGTGCTTAGCTTGCTGTTTGTAGCTTGTTGGCTAGAGAGGTCGTCGTACGCCGGTGGCTGGCGATCGCCGGCCGGCCGGTGGTCCATGACTAACGGTGCCGCGAGCTGCCAGCCTGC AGCGC GGTGGACATGAGCCGGCGACTCGGCGCCGCGGCCGCCGTCCTCCTCCTGTGGCTCGCCGTGCTCACCTTCGCCTTGCACGGCTACTACGGCGGCCGCCTCGGCTCCGCGAGGCGGCGGAATATCCTCCTCCAACACCCGGCGCTAGCGCTCCATCTCCCCACCAGGAAGATGCTCCTCGCCGTGGCGAGCTTCGACGACGCCTCCTCGCCGTCGTCGTTGACGACCACCGATCGTCATCATCACCATCACAGGCATCATGGCCACCACCATCATCGCGGCCATG ATCGGTGGAACAGG AAGGGTGTCCCGCC G ACGGCAGCTGGGCC GGGCG AGG AGGTCG ACCCGCGGTTCGGCGTGCAG AAG AGGCTGGTCCCGACGGGCCCCAACCCCCTGCACCATTGATGCCGGCGGCTCGCCATTGATGGGTGCTCGAGTTTTTCTGCGGTGAGTCACGCGCACATATACACTACTACACCGTTCTTGTTGTGTTCAT CGATCGACCAAAGGCTAGCTAGCTAGCTAGCACAGTAATATTGATTCCAATTCCAACCTGTGGATGAATTCAAGAAAGCATTGCCGATGTGTGTGTGCTCTTGCATGTATGTACCACGATCATATCAGAAAGCTTCAAAACAAGAGGAGAAAAAGAAA] [+] EMBL OS12732A [ CAACTCCTTCCTCCTCTTAACCACGCCCTCTCTCACCGTCGTCTTCCTCAATTCCCTCTACCCCTGACCGCCCGCACGCGCGCGCTGCCTAGCTAACACAAACCGCCATTGCTTCCCCTNCTNCTCCTTGCCGCCGTGCTTAGCTTGCTGTTTGTAGCTTGTTGGCTAGAGAGGTCGTCGTACGCCGGTNGCTGGCGATCGCCGGCCGGCCGGTGGTCCATGACTAACGGTGCCGCGAGCTGCCAGCCTGCAAGCGCGGGTGGA ] [+] EMBL CB964432 [ ggaataGCTGCGG TG CGTCCTCCTCCTGTGGCTCGCCGTGCTCA CTTCGCCTTCCACGGCTACTACGGCGG CGCCTCGGCTCCGCGAGGCGGCGGAATATCCTCCTCCAACACCCGGCGCTAGCGCTCCATCTCCCCACCAGGAAGATGCTCCTCGCCGTGGCGAGCTTCGACGACGCCTCCTCGCCATCGTCGTTGACGACCACCGATCGTCATCATCACCATCACAGGCATCATGGCCACCACCATCATCGCGGCCATG ATCGGTGGAACAGG AAGGGTGTCCCGCC G ACGGCAGCTGGGCC GGGCG AGG AGGTCG ACCCGCGGTTCGGCGTGCAG AAG AGGCTGGTCCCGACGGGCCCCAACCCCCTGCACCATTGATGCCGGCGGCTCGCCATTGATGGGTGCTCGAGTTTTTCTGCGGTGAGTCACGCGCACATATACACTACTACACCGTTCTTGTTGTGTTCAT CGATCGACCAAAGGCTAGCTAGCTAGCTAGCACAGTAATATTGATTCCAATTCCA ] [+] EMBL CB966187 [ tgGGCTG CGT CTCCTCCTGTGGCTCG CGTGCTCA CTTCGCCTTCCACGGCTACTACGGCGGCCGCCTCGGCTCCGCGAGGCGGCGGAATATCCTCCTCCAACACCCGGCGCTAGCGCTCCATCTCCCCACCAGGAAGATGCTCCTCGCCGTGGCGAGCTTCGACGACGCCTCCTCGCCATCGTCGTTGACGACCACCGATCGTCATCATCACCATCACAGGCATCATGGCCACCACCATCATCGCGGCCATG ATCGGTGGAACAGG AAGGGTGTCCCGCC G ACGGCAGCTGGGCC GGGCG AGG AGGTCG ACCCGCGGTTCGGCGTGCAG AAG AGGCTGGTCCCGACGGGCCCCAACCCCCTGCACCATTGATGCCGGCGGCTCGCCATTGATGGGTGCTTCAATTTTTCTGCGGTGAGTCACGCGCACATATACACTACTACACCGTTCTTGTTGTGTTCAT CGATCGACCAAAGGCTAGCTAGCTAGCTAGCACAGTAATATTGATTCCAATTCCA ] [+] EMBL CB966184 [ CCTCCTCCTGTGGCTCGCCGTGCTC CCTTCGCCTTCCACGGCTACTACGGCGGCCGCCTCGGCTCCGCGAGGCGGCGGAATATCCTCCTCCAACACCCGGCGCTAGCGCTCCATCTCCCCACCAGGAAGATGCTCCTCGCCGTGGCGAGCTTCGACGACGCCTCCTCGCCATCGTCGTTGACGACCACCGATCGTCATCATCACCATCACAGGCATCATGGCCACCACCATCATCGCGGCCATG ATCGGTGGAACAGG AAGGGTGTCCCGCC G ACGGCAGCTGGGCC GGGCG AGG AGGTCG ACCCGCGGTTCGGCGTGCAG AAG AGGCTGGTCCCGACGGGCCCCAACCCCCTGCACCATTGATGCCGGCGGCTCGCCATTGATGGGTGCTCGAGTTTTTCTGCGGTGAGTCACGCGCACATATACACTACTACACCGTTCTTGTTGTGTTCATNCGATCGACCAAAGGCTAGCTAGCTAGCTAGCACAGc ] [+] EMBL CB965356 [ TCCTGTGGCTCGCCGTGCTCACCTTCGCCTTCCACGGCTACTACGGCGGCCGCCTCGGCTCCGCGAGGCGGCGGAATATCCTCCTCCAACACCCGGCGCTAGCGCTCCATCTCCCCACCAGGAAGATGCTCCTCGCCGTGGCGAGCTTCGACGACGCCTCCTCGCCATCGTCGTTGACGACCACCGATCGTCATCATCACCATCACAGGCATCATGGCCACCACCATCATCGCGGCCATGCATCGGTGGAACAGGCAAGGGTGTCCCGCCTGCACGGCAGCTGGGCCTGGGCGCAGGCAGGTCGCACCTGCGGTTCGGCGTGCAGCAAGCAGGCTGGTCCCGACGGGCCCCAACCCCCTGCACCATTGATGCCGGCGGCTCGCCATTGATGGGTGCTCGAGTTTTTCTGCGGTGAGTCACGCGCACATATACACTACTACACCGTTCTTGTTGTGTTCAT CGATCGAACAAAGGCTAGCTAGCTAGCTAGCACAGTAATATTGATTCCAATTCCAACCTGTGGA ] consensusID : consensus_10480#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 314 fasta sequence [TCCTGTGGCTCGCCGTGCTCACCTTCGCCTTCCACGGCTACTACGGCGGCTGCTCGGCTCCGCGAGGCGGCGGAATATCCTCCTCCAACACCCGGCGCTAGCGCTCCATCTCCCCACCAGGAAGATGCTCCTCGCCTGTGGCGAGCTTCGACGACGCCTCCTCGCCATCGTCGTTGACGACCACCGATCGTCATCATCACCATCACAGGCATCATGGCCCCCCACCATCCATCGCTGGCCACATGCATCGGTGGCAACAGGCAAGGGTTGTCCCTGCCGCACTGGCCAGATTGTGTGCCGGTGACGCAGTGCAG] [+] EMBL CB965891 [TCCTGTGGCTCGCCGTGCTCACCTTCGCCTTCCACGGCTACTACGGCGGCTGCTCGGCTCCGCGAGGCGGCGGAATATCCTCCTCCAACACCCGGCGCTAGCGCTCCATCTCCCCACCAGGAAGATGCTCCTCGCCTGTGGCGAGCTTCGACGACGCCTCCTCGCCATCGTCGTTGACGACCACCGATCGTCATCATCACCATCACAGGCATCATGGCCCCCCACCATCCATCGCTGGCCACATGCATCGGTGGCAACAGGCAAGGGTTGTCCCTGCCGCACTGGCCAGATTGTGTGCCGGTGACGCAGTGCAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10480#0 CGCGCGCGCGCGCGGCGCGGGTGGTTTACGCAAGCTGAGCTGCCGCCGCGCGGCTTGCTA 60 consensus_10480#1 ------------------------------------------------------------ consensus_10480#0 GTTAGCGTCAAATCGATCGGTTCGAGCCCTGCAATAGGAGTCCCACGCAAGCAACTCCTT 120 consensus_10480#1 ------------------------------------------------------------ consensus_10480#0 CCTCCTCTTAACCACGCCCTCTCTCACCGTCGTCTTCCTCAATTCCCTCTACCCCTCACC 180 consensus_10480#1 ------------------------------------------------------------ consensus_10480#0 GCCCGCACGCGCGCGCTGCCTAGCTAACACAAACCGCCATTGCTTCCCCTCCTCCTCCTT 240 consensus_10480#1 ------------------------------------------------------------ consensus_10480#0 GCCGCCGTGCTTAGCTTGCTGTTTGTAGCTTGTTGGCTAGAGAGGTCGTCGTACGCCGGT 300 consensus_10480#1 ------------------------------------------------------------ consensus_10480#0 GGCTGGCGATCGCCGGCCGGCCGGTGGTCCATGACTAACGGTGCCGCGAGCTGCCAGCCT 360 consensus_10480#1 ------------------------------------------------------------ consensus_10480#0 GCAGCGCGGTGGACATGAGCCGGCGACTCGGCGCCGCGGCTGCGTCCTCCTCCTGTGGCT 420 consensus_10480#1 --------------------------------------------------TCCTGTGGCT 10 ********** consensus_10480#0 CGCCGTGCTCACCTTCGCCTTCCACGGCTACTACGGCGGCCGCCTCGGCTCCGCGAGGCG 480 consensus_10480#1 CGCCGTGCTCACCTTCGCCTTCCACGGCTACTACGGCGGCTGC-TCGGCTCCGCGAGGCG 69 **************************************** ** **************** consensus_10480#0 GCGGAATATCCTCCTCCAACACCCGGCGCTAGCGCTCCATCTCCCCACCAGGAAGATGCT 540 consensus_10480#1 GCGGAATATCCTCCTCCAACACCCGGCGCTAGCGCTCCATCTCCCCACCAGGAAGATGCT 129 ************************************************************ consensus_10480#0 CCTCGCC-GTGGCGAGCTTCGACGACGCCTCCTCGCCATCGTCGTTGACGACCACCGATC 599 consensus_10480#1 CCTCGCCTGTGGCGAGCTTCGACGACGCCTCCTCGCCATCGTCGTTGACGACCACCGATC 189 ******* **************************************************** consensus_10480#0 GTCATCATCACCATCACAGGCATCATGGCCACC-ACCATC-ATCGC-GGCCATG---ATC 653 consensus_10480#1 GTCATCATCACCATCACAGGCATCATGGCCCCCCACCATCCATCGCTGGCCACATGCATC 249 ****************************** ** ****** ***** ***** *** consensus_10480#0 GGTGG-AACAGGAAGGG--TGTCCCGCCGACGGCAGCTGGGCCGGGCGAGGAGGTCGACC 710 consensus_10480#1 GGTGGCAACAGGCAAGGGTTGTCCCTGCCGCACTGGCCAGATTGTGTGCCGGTGACGCAG 309 ***** ****** * ** ****** * * ** * * * * * * ** consensus_10480#0 CGCGGTTCGGCGTGCAGAAGAGGCTGGTCCCGACGGGCCCCAACCCCCTGCACCATTGAT 770 consensus_10480#1 TGCAG------------------------------------------------------- 314 ** * consensus_10480#0 GCCGGCGGCTCGCCATTGATGGGTGCTCGAGTTTTTCTGCGGTGAGTCACGCGCACATAT 830 consensus_10480#1 ------------------------------------------------------------ consensus_10480#0 ACACTACTACACCGTTCTTGTTGTGTTCATCGATCGACCAAAGGCTAGCTAGCTAGCTAG 890 consensus_10480#1 ------------------------------------------------------------ consensus_10480#0 CACAGTAATATTGATTCCAATTCCAACCTGTGGATGAATTCAAGAAAGCATTGCCGATGT 950 consensus_10480#1 ------------------------------------------------------------ consensus_10480#0 GTGTGTGCTCTTGCATGTATGTACCACGATCATATCAGAAAGCTTCAAAACAAGAGGAGA 1010 consensus_10480#1 ------------------------------------------------------------ consensus_10480#0 AAAAGAAA 1018 consensus_10480#1 -------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||