These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10485#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 807 fasta sequence [AAAGCTACACAGGTAGAATCATCGACCGTAAGTAAGTACTACTCCTACGTACATTAAGTGTGAGCTTGATTAACTATGGAGGTATCCAAGCTGGCCATTGCTTTGGCCATGGTAGCCGCCATGGCACTCCCCTCCCAAGCTCAAAACTCCCCGCAGGACTACGTGAGGCTCCACAACGCCGCCCGCGCCGCCGTCGGCGTGGGTCCGGTGACCTGGGACACGAGCGTGCAGGCGTTCGCGGAGAACTACGCCAGCCAGAGAAGCGGCGACTGCAGCCTGATCCACTCCAGCAACCGGAACAACCTTGGCGAGAACCTCTTCTGGGGTTCGGCCGGCGGGGACTGGACGGCGGCGAGCGCGGTGCAGTCGTGGGTGGGCGAGAAGAGCGACTACGACTACGCCTCCAACAGCTGCGCGCAGGGGAAGGTGTGCGGGCACTACACGCAGGTGGTGTGGCGCGCGTCGACCAGCATCGGCTGCGCCCGCGTCGTCTGCAGCAACGGCCGCGGCGTCTTCATCACATGCAACTATAAGCCGGCCGGCAACTTCGTCGGACAGAGGCCTTACTAAGTTATTTATACACACGGGCGTACGTACTGGCTAGTACTACGTATAGTAGTGAATAAATAAAGACGTGAAAATGTAAACAGGTCAGTGTCTGATCCACGCCTTCACGGTCCATACCGAGGATTCTATAAAGCGTCATGTCGTACAAGTAAAAATAAATAGTACTCCCTCTGTTTCTTTCTGTTTCAAGTTATAACACCTATTAACTTTGGTTAAAGTTAAATTGCTTTAAATTTAACT] [+] EMBL CF335554 [AAAGCTACACAGGTAGAATCATCGACCGTAAGTAAGTACTACTCCTACGTACATTAAGTGTGAGCTTGATTAACTATGGAGGTATCCAAGCTGGCCATTGCTTTGGCCATGGTAGCCGCCATGGCACTCCCCTCCCAAGCTCAAAACTCCCCGCAGGACTACGTGAGGCTCCACAACGCCGCCCGCGCCGCCGTCGGCGTGGGTCCGGTGACCTGGGACACGAGCGTGCAGGCGTTCGCGGAGAACTACGCCAGCCAGAGAAGCGGCGACTGCAGCCTGATCCACTCCAGCAACCGGAACAACCTTGGCGAGAACCTCTTCTGGGGTTCGGCCGGCGGGGACTGGACGGCGGCGAGCGCGGTGCAGTCGTGGGTGGGCGAGAAGAGCGACTACGACTACGCCTCCAACAGCTGCGCGCAGGGGAAGGTGTGCGGG ] [+] EMBL AK107926 [ GCTACACAGGTAGAATCATCGACCGTAAGTAAGTACTACTCCTACGTACATTAAGTGTGAGCTTGATTAACTATGGAGGTATCCAAGCTGGCCATTGCTTTGGCCATGGTAGCCGCCATGGCACTCCCCTCCCAAGCTCAAAACTCCCCGCAGGACTACGTGAGGCTCCACAACGCCGCCCGCGCCGCCGTCGGCGTGGGTCCGGTGACCTGGGACACGAGCGTGCAGGCGTTCGCGGAGAACTACGCCAGCCAGAGAAGCGGCGACTGCAGCCTGATCCACTCCAGCAACTGGAACAACCTTGGCGAGAACCTCTTCTGGGGTTCGGCCGGCGGGGACTGGACGGCGGCGAGCGCGGTGCAGTCGTGGGTGGGCGAGAAGAGCGACTACGACTACGCCTCCAACAGCTGCGCGCAGGGGAAGGTGTGCGGGCACTACACGCAGGTGGTGTGGCGCGCGTCGACCAGCATCGGCTGCGCCCGCGTCGTCTGCAGCAACGGCCGCGGCGTCTTCATCACATGCAACTATAAGCCGGCCGGCAACTTCGTCGGACAGAGGCCTTACTAAGTTATTTATACACACGGGCGTACGTACTGGCTAGTACTACGTATAGTAGTGAATAAATAAAGACGTGAAAATGTAAACAGGTCAGTGTCTGATCCACGCCTTCACGGTCCATACCGAGGATTCTATAAAGCGTCATGTCGTACAAGTAAAAATAAATAGTACTCCCTCTGTTTCTTTCTGTTTCAGGTTATAACACCTATTAACTTTGGTTAAAGTTAAATTGCTTTAAATTTAACT] [+] EMBL BF889437 [ TACTACTCCTACGTACATTAAGTGTGAGCTTGATTAACTATGGAGGTATCCAAGCTGGCCATTGCTTTGGCCATGGTAGCCGCCATGGCACTCCCCTCCCAAGCTCAAAACTCCCCGCAGGACTACGTGAGGCTCCACAACGCCGCCCGCGCCGCCGTCGGCGTGGGTCCGGTGACCTGGGACACGAGCGTGCAGGCGTTCGCGGAGAACTACGCCAGCCAGAGAAGCGGCGACTGCAGCCTGATCCACTCCAGCAACCGGAACAACCTTGGCGAGAACCTCTTCTGGGGTTCGGCCGGCGGGGACTGGACGGCGGCGAGCGCGGTGCAGTCGTGGGTGGGCGAGAAGAGCGACTACGACTACGCCTCCAACAGCTGCGCGCAGGGGAAGGTGTGCGGGCACTACACGCAGGTGGTGTGGCGCGCGTCGACCAGCATCGGCTGCGCCCGCGTCGTCTGCAGCAACGGCCGCGGCGTCTTCATCACATGCAACTATAAGCCGGCCGGCAACTTCGTCGGACAGAGGCCTTACTAAGTTATTTATACACACGGGCGTACGTACTGGCTAGTACTACGTATAGTAGTGAATAAATAAAGACGTGAAAATGTAAACAGGTCAGTGTCTGATCCACGCCTTCACGGTCCATACCGAGGATTCTATAAAGCGTCATGTCGTACAAGTAAAAAaa ] [+] EMBL CF326127 [ gCTCCTACGTACATTAAGTGTGAGCTTGATTAACTATGGAGGTATCCAAGCTGGCCATTGCTTTGGCCATGGTAGCCGCCATGGCACTCCCCTCCCAAGCTCAAAACTCCCCGCAGGACTACGTGAGGCTCCACAACGCCTCCCGCGCCGCCGTCGGCGTGGGTCCGGTGACCTGGGACACGAGCGTGCAGGCGTTCGCGGAGAACTACGCCAGCCAGAGAAGCGGCGACTGCAGCCTGATCCACTCCAGCAACCGGAACAACCTTGGCGAGAACCTCTTCTGGGGTTCGGCCGGCGGGGACTGGACGGCGGCGAGCGCGGTGCAGTCGTGGGTGGGCGAGAAGAGCGACTACGACTACGCCTCCAACAGCTGCGCGCAGGGGAAGGTGTGCGGGCACTACACGCAGGTGGTGTGGCGCGCGTCGACCAGCATCGGCTGCGCCCGCGTCGTCTGCAGCAACGGCCGCGGCGTCTTCATCACATGCAACTATAAGCCGGCCGGCAACTTCGTCGGACAGAGGCCTTACTAAGTTA ] [+] EMBL AT003459 [ GCCATGGTAGCCGCCATGGCACTCCCCTCCCAAGCTCAAAACTCCCCGCAGGACTACGTGAGGTTCCACAACGCCGCCCGCGCCGCCGTCGGCGTGGGTCCGGTGACCTGGGACACGAGCGTGCAGGCGTTCGCGGAGAACTACGCCAGCCAGAGAAGCGGCGACTGCAGCCTGATCCACTCCAGCAACCGGAACAACCTTGGCGAGAACCTCTTCTGGGGTTCGGCCGGCGGGGACTGGACGGCGGCGAGCGCGGTGCAGTCGTGGGTGGGCGAGAAGAGCGACTACGACTACGCCTCCAACAGCTGCGCGCAGGGGAAGGTGTGCGGGCACTACACGCAGGTGGTGTGGCGCGCGTCGACCAGCATCGGCTGCGCCCGCGTCGTCTGCAGCAACGGCCGCGGCGTCTTCATCACATGCAACTATAAGCCGGCCGGCAACTTCGTCGGACAGAGGCCTTACTAAGTTATTTATACACACGGGCGTACGTACTGGCTAGTACTACGTATAGTAGTGAATAAATAAAGACGTGAAAATGTAAACAGGTCAGTGTCTGATCCACGCCTTCACGGTCCATACCGAGGATTCTATAAAGCGTCATGTCGTACAAGTAAAAATAAATAGTACTCCCTCTGTTTCTTTCaaaaaaaa ] [-] EMBL CF335553 [ GCGGGGACTGGACGGCGGCGAGCGCGGTGCAGTCGTGGGTGGGCGAGAAGAGCGACTACGACTACGCCTCCAACAGCTGCGCGCAGGGGAAGGTGTGCGGGCACTACACGCAGGTGGTGTGGCGCGCGTCGACCAGCATCGGCTGCGCCCGCGTCGTCTGCAGCAACGGCCGCGGCGTTTTCATCACATGCAACTATAAGCCGGCCGGCAACTTCGTCGGACAGAGGCCTTACTAAGTTATTTATACACACGGGCGTACGTACTGGCTAGTACTACGTATAGTAGTGAATAAATAAAGACGTGAAAATGTAAACAGGTCAGTGTTTGATCCACGCCTTCACGGTCCATACCGAGGATTCTATAAAGCGTCATGTCGTACAAGTAAAAATAAATAGTACTCCCTCTGTTTCTTTCTGTTTCAAaaaa ] consensusID : consensus_10485#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 598 fasta sequence [AATTCGGCACGAGCGACCGTAAGTAAGTACTACTCCTACGTACATTAAGTGTGAGCTTGATTAACTATGGAGGTATCCAAGCTGGCCATTGCTTTGGCCATGGTAGCCGCCATGGCACTCCCCTCCCAAGCTCAAAACTCCCCGCAGGACTACGTGAGGCTCCACAACGCCGCCCGCGCCGCCGTCGGCGTGGGTCCGGTGACCTGGGACACGAGCGTGCAGGCGTTCGCGGAGAACTACGCCAGCCAGAGAAGCGGCGACTGCAGCCTGATCCACTCCAGCAACCGGAACAACCTTGGCGAGAACCTCTTCTGGGGTTCGGCCGGCGGGGACTGGACGGCGGCGAGCGCGGTGCAGTCGTGGGTGGGCGAGAAGAGCGACTACGACTACGCCTCCNACAGCTGCGCGCAGGGGAAGGTGTGCGGGCACTACACCGCAGTGCTGTGGCGCGCGTCNACCAGCATCGGCTGGACCCGCGTCGTCTGCAGCAACGGACGCGCGGCTTCATCCATGGAATATTAGCCGGCGGCGACTTCGTCGAACAAGGACTTACTAGCCATTTAACACCCGGCGGTACGTATGGCAAGGACCACGATAG] [+] EMBL CA758747 [AATTCGGCACGAGCGACCGTAAGTAAGTACTACTCCTACGTACATTAAGTGTGAGCTTGATTAACTATGGAGGTATCCAAGCTGGCCATTGCTTTGGCCATGGTAGCCGCCATGGCACTCCCCTCCCAAGCTCAAAACTCCCCGCAGGACTACGTGAGGCTCCACAACGCCGCCCGCGCCGCCGTCGGCGTGGGTCCGGTGACCTGGGACACGAGCGTGCAGGCGTTCGCGGAGAACTACGCCAGCCAGAGAAGCGGCGACTGCAGCCTGATCCACTCCAGCAACCGGAACAACCTTGGCGAGAACCTCTTCTGGGGTTCGGCCGGCGGGGACTGGACGGCGGCGAGCGCGGTGCAGTCGTGGGTGGGCGAGAAGAGCGACTACGACTACGCCTCCNACAGCTGCGCGCAGGGGAAGGTGTGCGGGCACTACACCGCAGTGCTGTGGCGCGCGTCNACCAGCATCGGCTGGACCCGCGTCGTCTGCAGCAACGGACGCGCGGCTTCATCCATGGAATATTAGCCGGCGGCGACTTCGTCGAACAAGGACTTACTAGCCATTTAACACCCGGCGGTACGTATGGCAAGGACCACGATAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10485#0 AAAGCTACACAGGTAGAATCATCGACCGTAAGTAAGTACTACTCCTACGTACATTAAGTG 60 consensus_10485#1 ---------AATTCGGCACGAGCGACCGTAAGTAAGTACTACTCCTACGTACATTAAGTG 51 * * * * ************************************** consensus_10485#0 TGAGCTTGATTAACTATGGAGGTATCCAAGCTGGCCATTGCTTTGGCCATGGTAGCCGCC 120 consensus_10485#1 TGAGCTTGATTAACTATGGAGGTATCCAAGCTGGCCATTGCTTTGGCCATGGTAGCCGCC 111 ************************************************************ consensus_10485#0 ATGGCACTCCCCTCCCAAGCTCAAAACTCCCCGCAGGACTACGTGAGGCTCCACAACGCC 180 consensus_10485#1 ATGGCACTCCCCTCCCAAGCTCAAAACTCCCCGCAGGACTACGTGAGGCTCCACAACGCC 171 ************************************************************ consensus_10485#0 GCCCGCGCCGCCGTCGGCGTGGGTCCGGTGACCTGGGACACGAGCGTGCAGGCGTTCGCG 240 consensus_10485#1 GCCCGCGCCGCCGTCGGCGTGGGTCCGGTGACCTGGGACACGAGCGTGCAGGCGTTCGCG 231 ************************************************************ consensus_10485#0 GAGAACTACGCCAGCCAGAGAAGCGGCGACTGCAGCCTGATCCACTCCAGCAACCGGAAC 300 consensus_10485#1 GAGAACTACGCCAGCCAGAGAAGCGGCGACTGCAGCCTGATCCACTCCAGCAACCGGAAC 291 ************************************************************ consensus_10485#0 AACCTTGGCGAGAACCTCTTCTGGGGTTCGGCCGGCGGGGACTGGACGGCGGCGAGCGCG 360 consensus_10485#1 AACCTTGGCGAGAACCTCTTCTGGGGTTCGGCCGGCGGGGACTGGACGGCGGCGAGCGCG 351 ************************************************************ consensus_10485#0 GTGCAGTCGTGGGTGGGCGAGAAGAGCGACTACGACTACGCCTCCAACAGCTGCGCGCAG 420 consensus_10485#1 GTGCAGTCGTGGGTGGGCGAGAAGAGCGACTACGACTACGCCTCCNACAGCTGCGCGCAG 411 ********************************************* ************** consensus_10485#0 GGGAAGGTGTGCGGGCACTACACGCAGGTGGTGTGGCGCGCGTCGACCAGCATCGGCTGC 480 consensus_10485#1 GGGAAGGTGTGCGGGCACTACACCGCAGTGCTGTGGCGCGCGTCNACCAGCATCGGCTGG 471 *********************** *** ************* ************** consensus_10485#0 GCCCGCGTCGTCTGCAGCAACGGCCGCGGCGTCTTCATCACATGCAACTATAAGCCGGCC 540 consensus_10485#1 ACCCGCGTCGTCTGCAGCAACGGACGCG-CGGCTTCATC-CATGGAA-TATTAGCCGGC- 527 ********************** **** ** ******* **** ** *** ******* consensus_10485#0 GGCAACTTCGTCGGACAGAGGCCTTACTAAGTTATTTATACACACGGGCGTACGTACTGG 600 consensus_10485#1 GGCGACTTCGTCGAACA-AGGACTTACTA-GCCATTTA-ACACCCGGCGGTACGTA-TGG 583 *** ********* *** *** ******* * ***** **** *** ******* *** consensus_10485#0 CTAGTACTACGTATAGTAGTGAATAAATAAAGACGTGAAAATGTAAACAGGTCAGTGTCT 660 consensus_10485#1 CAAGGACCACG-ATAG-------------------------------------------- 598 * ** ** *** **** consensus_10485#0 GATCCACGCCTTCACGGTCCATACCGAGGATTCTATAAAGCGTCATGTCGTACAAGTAAA 720 consensus_10485#1 ------------------------------------------------------------ consensus_10485#0 AATAAATAGTACTCCCTCTGTTTCTTTCTGTTTCAAGTTATAACACCTATTAACTTTGGT 780 consensus_10485#1 ------------------------------------------------------------ consensus_10485#0 TAAAGTTAAATTGCTTTAAATTTAACT 807 consensus_10485#1 --------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||