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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10493#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 768 fasta sequence
[TATCCTCTAGAGC-GGCGCCTCGGCTCCGGCGCCGCCCTCTTCTCGAGGAACCCGACGTAGAGGTCCGACTGCTCGGTGTCGCAGCTGGGCAGCGCCGCCCGCTCGCCGCCGTCGGCCATGGCCCTGACGAACGACACGAACTGGCGCCAGTTGTC-GCCGTCGAACAGCTTCTTGTTCATGCGCAGGTAC-GTGAAC-GCGCCCAGCCCGGCGCTCGCCGCGGTGGCCACCACCTGCGCGAACGCCGCCTCGTCGTACCGCTCCAGCGCGTTCTCGCCGGCGAGCCCCACGCGCGCCGC-GCGC-GCCG-GGACCGCACCTGCCGCACCAGCTGCTCCGGC-GA-GCACCCGGC-GTGCTCCGGCTGCTGCTCGTCCCGCATCTCCATGCAC-GTGAAGTTGAGCACCGCGCC-GC-GCCGCGCCAGCATC-GCCGCGACGGGCGCGTACCCGTCGCGGCGCCGCGTG-TTGTAGTACCCCGCCGTGAGCTCCGC-GGCGTGCGA--CCGCGTCC--GGTAGTGCCAGTGGATGCCGGCGACCTTGGCCGAGAGCGCGGCGCCGGTGCCGCGGAAGACGGCCTCGGCGGCGGCCAGGACGCGGTCGCCGTGCTCCAGCAGCATCCCGGAGTACCACCCGAGGAAGAAGTCGCCGTACTCGGTGCACCACGTGCCGTCTCGCCGGAAGAACCCCGTCTCCTCCGGGAACTGCTTGTACTCGCCGGCGTCGTGCGGCCCGCCCCTCCACCACTCCTCGTGCCCCGCCGACGCCGCCGCCTGCTGCAGCG]
[-] EMBL BI810126 [ ATCCTCTAGAGC GGCGCCTCGGCTCCGGCGCCGCCCTCTTCTCGAGGAACCCGACGTAGAGGTCCGACTGCTCGGTGTCGCAGCTGGGCAGCGCCGCCCGCTCGCCGCCGTCGGCCATGGCCCTGACGAACGACACGAACTGGCGCCAGTTGTC GCCGTCGAACAGCTTCTTGTTCATGCGCAGGTAC GTGAAC GCGCCCAGCCCGGCGCTCGCCGCGGTGGCCACCACCTGCGCGAACGCCGCCTCGTCGTACCGCTCCAGCGCGTTCTCGCCGGCGAGCCCCACGCGCGCCGC GCGC GCCG GGACCGCACCTGCCGCACCAGCTGCTCCGGC GA GCACCCGGC GTGCTCCGGCTGCTGCTCGTCCCGCATCTCCATGCAC GTGAAGTTGAGCACCGCGCC GC GCCGCGCCAGCATC GCCGCGACGGGCGCGTACCCGTCGCGGCGCCGCGTG TGTAGTACCCCGCCGTGAGCTCCGC GG GTGCGA CG GTCC GGTAGTGCCAG GGATG CGG GAACTTGGGCGAGAGC ]
[-] EMBL BI811404 [tggaCTCTAGAGCGGGCG CTCGGCTCCGGCGCCGCCCTCTTCTCGAGGAACCCGACGTA AGGTCCGACTG TCGGTGTCGCAGCTGGGCAGCGCCGCCCGCTCGCCGCCGTCGGCCATGGCCCTGACGAACGACACGAACTGGCGCCAGTTGTCTGCCGTCGAACAGCTTCTTGTTCATGCGCAGGTACTGTGAACTGCGCCCAGCCCGGCGCTCGCCGCGGTGGCCACCACCTGCGCGAACGCCGCCTCGTCGTACCGCTCCAGCGCGTTCTCGCCGG GAGCCCCACGCGCGCCGCTGCGCTGCCG GGACCTGACCTGCCGCACCAGCTGCTCCGGCTGATGCACCCGGCTGTGCTCCGGCTGCTGCTCGTCCCGCATCTCCATGCACTGTGAAGTTGAGCACCGGGCCTGCTGCCGTGCCAGCATCTGCCGGGACGGGCGCGTACCCGTCGCGG GCCGCGTGTTTGTAGTACCCCG CGTGAGCTCCGCGGGGGTGCGAACCCGCGTCCGGGGTAGTGCCAGTGGATTGCGGCGAACTTGtgg ]
[+] EMBL CB663767 [ GTAGAGGTCCGACTGCTCGGTGTCGCAGCTGGGCAGCGCCGCCCGCTCGCCGCCGTCGGCCATGGCCCTGACGAACGACACGAACTGGCGCCAGTTGTC GCCGTCGAACAGCTTCTTGTTCATGCGCAGGTAC GTGAAC GCGCCCAGCCCGGCGCTCGCCGCGGTGGCCACCACCTGCGCGAACGCCGCCTCGTCGTACCGCTCCAGCGCGTTCTCGCCGGCGAGCCCCACGCGCGCCGC GCGC GCCGCGGACCGCACCTGCCGCACCAGCTGCTCCGGC GA GCACCCGGC GTGCTCCGGCTGCTGCTCGTCCCGCATCTCCATGCAC GTGAAGTTGAGCACCGCGCC GC GCCGCGCCAGCATC GCCGCGACGGGCGCGTACCCGTCGCGGCGCCGCGTG TTGTAGTACCCCGCCGTGAGCTCCGC GGCGTGCGA CCGCGTCC GGTAGTGCCAGTGGATGCCGGCGACCTTGGCCGAGAGCGCGGCGCCGGTGCCGCGGAAGACGGCCTCGGCGGCGGCCAGGACGCGGTCGCCGTGCTCCAGCAGCATCCCGGAGTACCACCCGAGGAAGAAGTCGCCGTACTCGGTGCACCACGTGCCGTCTCGCCGGAAGAACCCCGTCTCCTCCGGGAACTGCTTGTACTCGCCGGCGTCGTGCGGCCCGCCCCTCCACCACTCCTCGTGCCCCGCCGACGCCGCCGCCTGCTGCAGCG]
[+] EMBL BU667274 [ GGTGGCCACCACCTGCGCGAACGCCGCCTCGTCGTACCGCTCCAGCGCGTTCTCGCCGGCGAGCCCCACGCGCGCCGC GCGC GCCGCGGACCGCACCTGCCGCACCAGCTGCTCCGGC GA GCACCCGGC GTGCTCCGGCTGCTGCTCGTCCCGCATCTCCATGCAC GTGAAGTTGAGCACCGCGCC GC GCCGCGCCAGCATC GCCGCGACGGGCGCGTACCCGTCGCGGCGCCGCGTG TTGTAGTACCCCGCCGTGAGCTCCGC GGCGTGCGA CCGCGTCC GGTAGTGCCAGTGGATGCCGGCGACCTTGGCCGAGAGCGCGGCGCCGGTGCCGCGGAAGACGG CTCGGCGGCGGCCAGGACGCGGTCGCCGT ]
[-] EMBL CB648011 [ GGCGTGCGA CAGCGTCC GGTAGTGCCAGTGGATGCCGGCGACCTTGGCCGAGAGCGCGGCGCCGGTGCCTCGGAAGACGGCCTGGGCGGCGTCCAGGACGCGGTCGCCGTGCTCCAGCAGCATCCCGGAGTACCACCCGAGGAAGAAGTCGCCGTACTCGGTGCACCACGTGCCGTCTCGCCGGAAGAACCCCGTCTCCTCCGGGAACTGCTTGTACTCGCCGGCGTCGTGAGGACCGCCCCTCCCCCACTC ]
consensusID : consensus_10493#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 436 fasta sequence
[GAAACAGCGCCACCCGACGCGGCAACATCGCCGCAACAGGCGCGTACCCGTCGCGGCGCCGCGCGTTGTAGTACCGCGACGGGAGCTCCCCGGATGGCGACCGCGTACACTATTGCCACTGGATGCAAGGTACCTTGGCCGAGAGCGCTGCGCCGGAGCCTCGGAAGACTGCCTCGGCGGCGGCCAGAACGCGGTCTCCGTGCTCCAGCAGCATCCCGGAGTACCACCCGAGGAAGAAGTCGCCGTACTCGGTGCACCACGTGCCGTCTCGCCGGAAGAACCCCGTCTCCTCCGGGAACTGCTTGTACTCGCCGGCGTCGTGCGGCCCGCCCCTCCCCCACTCCTCGTGCCCCGCCGCCGCCGCCGCCTGCTGCAGCGACGCCCTCATGTACTTGTCATAGCATTGGAACTCGCCGATGCCAGGGAAACGCCATGT]
[+] EMBL CB661665 [GAAACAGCGCCACCCGACGCGGCAACATCGCCGCAACAGGCGCGTACCCGTCGCGGCGCCGCGCGTTGTAGTACCGCGACGGGAGCTCCCCGGATGGCGACCGCGTACACTATTGCCACTGGATGCAAGGTACCTTGGCCGAGAGCGCTGCGCCGGAGCCTCGGAAGACTGCCTCGGCGGCGGCCAGAACGCGGTCTCCGTGCTCCAGCAGCATCCCGGAGTACCACCCGAGGAAGAAGTCGCCGTACTCGGTGCACCACGTGCCGTCTCGCCGGAAGAACCCCGTCTCCTCCGGGAACTGCTTGTACTCGCCGGCGTCGTGCGGCCCGCCCCTCCCCCACTCCTCGTGCCCCGCCGCCGCCGCCGCCTGCTGCAGCGACGCCCTCATGTACTTGTCATAGCATTGGAACTCGCCGATGCCAGGGAAACGCCATGT]
consensusID : consensus_10493#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 222 fasta sequence
[GATCCTCTAAGCGGCGCCTCGGCTCCGGTGCCGCCTCTTCTCGAGGAACCCGACGTAGAGGTCCGACTGCTCGGTGTCGCAGCTGGGCAGCGCCGCCCGCTCGCCGCCGTCGGCCATGGCCTGACGAACGACACGAACTGGCGCCAGTTGTCGCCGTCGAACAGCTTCTTGTTCAATTGCGGCACTGTGTACATGTTGAAACTGCAGCCCAAGCTGGCGTGC]
[-] EMBL BI810158 [GATCCTCTAAGCGGCGCCTCGGCTCCGGTGCCGCCTCTTCTCGAGGAACCCGACGTAGAGGTCCGACTGCTCGGTGTCGCAGCTGGGCAGCGCCGCCCGCTCGCCGCCGTCGGCCATGGCCTGACGAACGACACGAACTGGCGCCAGTTGTCGCCGTCGAACAGCTTCTTGTTCAATTGCGGCACTGTGTACATGTTGAAACTGCAGCCCAAGCTGGCGTGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10493#0 TATCCTCTAGAGCGGCGCCTCGGCTCCGGCGCCGCCCTCTTCTCGAGGAACCCGACGTAG 60
consensus_10493#1 ------------------------------------------------------------
consensus_10493#2 ------------------------------------------------------------
consensus_10493#0 AGGTCCGACTGCTCGGTGTCGCAGCTGGGCAGCGCCGCCCGCTCGCCGCCGTCGGCCATG 120
consensus_10493#1 ------------------------------------------------------------
consensus_10493#2 ------------------------------------------------------------
consensus_10493#0 GCCCTGACGAACGACACGAACTGGCGCCAGTTGTCGCCGTCGAACAGCTTCTTGTTCATG 180
consensus_10493#1 ------------------------------------------------------------
consensus_10493#2 ------------------------------------------------------------
consensus_10493#0 CGCAGGTACGTGAACGCGCCCAGCCCGGCGCTCGCCGCGGTGGCCACCACCTGCGCGAAC 240
consensus_10493#1 ------------------------------------------------------------
consensus_10493#2 ------------------------------------------------------------
consensus_10493#0 GCCGCCTCGTCGTACCGCTCCAGCGCGTTCTCGCCGGCGAGCCCCACGCGCGCCGCGCGC 300
consensus_10493#1 ------------------------------------------------------------
consensus_10493#2 ------------------------------------------------------------
consensus_10493#0 GCCGGGACCGCACCTGCCGCACCAGCTGCTCCGGCGAGCACCCGGCGTGCTCCGGCTGCT 360
consensus_10493#1 ------------------------------------------------------------
consensus_10493#2 ------------------------------------------------------------
consensus_10493#0 GCTCGTCCCGCATCTCCATGCACGTGAAGTTGAGCACCGCGCCGCGCCGCGCCAGCATCG 420
consensus_10493#1 ------------------------------GAAACAGCGCCACCCGACGCGGCAACATCG 30
consensus_10493#2 ------------------------------------------------------------
consensus_10493#0 CCGCGACGGGCGCGTACCCGTCGCGGCGCCGCGTGTTGTAGTACCCCGCCGTGAGCTCCG 480
consensus_10493#1 CCGCAACAGGCGCGTACCCGTCGCGGCGCCGCGCGTTGTAGTACCGCGACGGGAGCTCCC 90
consensus_10493#2 ------------------------------------------------------------
consensus_10493#0 CGGCGTGCGACCGCGTCCGGTAGTGCCAGTGGATGCCGGCGACCTTGGCCGAGAGCGCGG 540
consensus_10493#1 CGGATGGCGACCGCGTACACTATTGCCACTGGATGCAAGGTACCTTGGCCGAGAGCGCTG 150
consensus_10493#2 ------------------------------------------------------------
consensus_10493#0 CGCCGGTGCCGCGGAAGACGGCCTCGGCGGCGGCCAGGACGCGGTCGCCGTGCTCCAGCA 600
consensus_10493#1 CGCCGGAGCCTCGGAAGACTGCCTCGGCGGCGGCCAGAACGCGGTCTCCGTGCTCCAGCA 210
consensus_10493#2 ----------------GATCCTCTAAGCGGCGCCT------CGGCTCCGGTGCC---GCC 35
** ** ****** * *** * **** **
consensus_10493#0 GCATCCCGGAGTACCACCCGAGGAAGAAGTCGCCGTACTCGGTGCACCACGTGCCGTCTC 660
consensus_10493#1 GCATCCCGGAGTACCACCCGAGGAAGAAGTCGCCGTACTCGGTGCACCACGTGCCGTCTC 270
consensus_10493#2 TCTTCTCGAGGAACC---CGACGTAGAGGTCCGACTGCTCGGTG------------TCGC 80
* ** ** * *** *** * *** *** * ******* ** *
consensus_10493#0 GCCGGAAGAACCCCGTCTCCTCCGGGAACTGCTTGTACTCGCCGGCGTCGTGCGGCCCGC 720
consensus_10493#1 GCCGGAAGAACCCCGTCTCCTCCGGGAACTGCTTGTACTCGCCGGCGTCGTGCGGCCCGC 330
consensus_10493#2 AGCTGGGCAGCGCCGCCCGCTC--GCCGCCGTCGGCCATGGCC--TGACGAACGACACGA 136
* * * * *** * *** * * * * * *** * ** ** * **
consensus_10493#0 CCCTCCACCACTCCTCGTGCCCCGCCGACGCCGCCGCCTGCTGCAGCG------------ 768
consensus_10493#1 CCCTCCCCCACTCCTCGTGCCCCGCCGCCGCCGCCGCCTGCTGCAGCGACGCCCTCATGT 390
consensus_10493#2 ACTGGCGCCAGTTGTCG----CCGTCGA-ACAGCTTCTTGTT-CAATTGCGGCACTGTGT 190
* * *** * *** *** ** * ** * ** * **
consensus_10493#0 ----------------------------------------------
consensus_10493#1 ACTTGTCATAGCATTGGAACTCGCCGATGCCAGGGAAACGCCATGT 436
consensus_10493#2 ACATGTTGAAACTGCAGCCCAAGCTGGCGTGC-------------- 222
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||