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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10503#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1385 fasta sequence
[CCTTTTTTTTCTTTTTGAAACCCAAATTAAATTTCCTTTCTTTTCGTTGTATAAACAATT-GGTTATGAA-ATCATAATACTTTGAGATCCCTCAAATTTCTTACAAACCTTTCTCCAACGGTCGACCCAACTCTCACAAACACAGCCGGGAAGCCAATCCGGGCCTCAACCTCGGCCTCAGACCCA-TGCGACATCCCCTC-TCCTACACCCCCTCTACTCGTACGACCACCGAACTCATCGCCGGTCCAAACGTGCTTCCATAAGCCGCCATCTGACATGGGAAAGTAGGCGGT-CACCGTGCTCCTCCCCTTGTCCAAGACCGGCACCACCAGCATCTCTGTCCCAACCAGGAAT-TGTTGGTATGTCATCT-TCTGCACACGCTGATCCTCCGGGTAGTGGAGGAAGAGGTGCCGCGCCACGGGAAGGCCCTTCTCCGCCGCCTCCTCGACGAGC-TGGATCCGGTAGAACTCCCAGGCTT-TGTAGATCTTTGCGCAGCGCGCGAAATGCGCGAGCGTGCGGTTATTGGAGTAGAACTGGCAGTTGGATCCTGGCTTGTTACCCTCGTGGGTGCGGAAGACGACGGTGAAGGCGCTGAGCTCCAGCCATCGGAGGAGGAGCTCCTCGCTGCGGCGGTAGCGGAGGAGCGGCAGGTCGACGGTGCAGTAGCCGCCGGCGTCGCCGTGGTTGAGCGGGAAGCCGGACATGCCGCCGGTGAGGAGGCCGACGACGCTGCTCTTGATGCCGTCGTTCGCCTGCCAGCTCACCATCTGGTCCCCTTCCCAGAACAGCATCGCCCACCTCAAGCTCTCCCTGAACCCCGCCCGCACGAAGAACACCAGCTCGCCGTCGCCGTCGCCGTCGTCGGCGTCGTCCGCGACGCGGCGGTGCTCGCCGGAGCGCCACTCGTCGGCGAACTCGCGGTTGACGCGCGCCCACAGCTCCGGGTACCGGTTGTGCGCCGCGACGGGGCCGTCGTCGCCGGAGCCGGAGGAGTGCAGCCGCGCGTTCAGCGGGAGGCCCTCGCCGAAGTCGGCCATCCAGCCGGCGGCGCCGCCGCGGGCCATCACGGCGAGGACCTCGCCCTTGAACCAGGCGCGCGCGGCCGGGTTGGTGAAGTCCAGCATGGCGACGTCGAACGCCGTGTTGGGCATCATGTACGGCTCGCCGGCGGCGTCCCGGACCAGGAGCCCCAGCTTCTTGGCCTCCTCGAACAGGTGCCTCCTCGCGTTCGCCTTCTTGTCCATCGGGACGAGGCATGGGTTGCAGTAGGTCATGGTCCTGACGCCGCGGCGCCGGAGATCGCGGACCAGATCATTCCATCCGGCGTAGTGGTCGTCGTCTACCTCCCAGTTCCACCATAGCTGGGATCCAATGGACGTCTTCCTC]
[+] EMBL CB676026 [CCTTTTTTTTCTCTTTGAAACCCAAATTAAATTTCCTTTCCTTTCGTTGTATAAACAATT GGTTATGAA ATCATAATACTTTGAGATCCCTCAAATTTCTTACAAACCTTTCTCCAACGGTCGACCCAACTCTCACAAACACAGCCGGGAAGCCAATCCGGGCCTCAACCTCGGCCTCAGACCCA TGCGACATCCCCTC TCCTACACCCCCTCTACTCGTACGACCACCGAACTCATCGCCGGTCCAAACGTGCTTCCATAAGCCGCCATCTGACATGGGAAAGTAGGCGGT CACCGTGCTCCTCCCCTTGTCCAAGACCGGCACCACCAGCATCTCTGTCCCAACCAGGAAT TGTTGGTATGTCATCT TCTGCACACGCTGATCCTCCGGGTAGTGGAGGAAGAGGTGCCGCGCCACGGGAAGGCCCTTCTCCGCCGCCTCCTCGACGAGC TGGATCCGGTAGAACTCCCAGGCTT TGTAGATCTTTGCGCAGCGCGCGAAATGCGCGAGCGTGCGGTTATTGGAGTAGAACTGGCAGTTGGATCCTGGCTTGTTACCCTCGTGGGTGCGGAAGACGACGGTGAAGGCGCTGAGCTCCAGCCATCGGAGGAGGAGCTCCTCGCTGCGGCGGTAGCGGAGGAGCGGCAGGTCGACGGTGCAGTAGCCGCCGGCGTCGCCGTGGTTGAGCGGGAAGCCGGACATGCCGCCGGTGAGGAGGCCGACGACGCTGCTCTTGATGCCGTCGTTCGCCTGCCAGCTCACCATCTGGTCCCCTTCCCAGAACAGCATCGCCCACCTCAAGCTCT ]
[-] EMBL BI812851 [ TTTTTTTTTGAAACCCAAATTAAATTTCCTTTCTTTTCG TGTATAAACAATG GGTTATGAA ATCATAATAC TTGAGATCCCTCAAATTTCTTACAAACCTTTCTCCAACGGTCGACCCAACTCTCACAAACACAGCCGGGAAGCCAATCCGGGCCTCAACCTCGGCCTCAGACCCA TGCGACATCCCCTC TCCTACACCCCCTCTACTCGTACGACCACCGAACTCATCGCCGGTCCAAACGTGCTTCCATAAGCCG CATCTGACATGGGAAAGTAGGCGGT CACCGTGCTCCTCCCCTTGTCCAAGACCGG ACCA CAG ATCTCTGTCCCAACCAGGAATGTGTTGGTATGTCATCT TCTGCACACGCTGATCCTCCGGGTAGTGGAGGAAGAGGTGCCGCGCCACGGGAAGG CCTTCTCCGCCGCCTCCTCGACGAGC TGGATCCGGTAGAACTCCCAGGC T TGTAGATCTTTGCG ]
[-] EMBL BM420475 [ TTTTGAAA CCAAATTAAATTTCCTTTCTTTTCGTTGTATAAACAA T GGTTATGAAGATCATAATACTTTGAGATCCCTCAAATTTCTTACAAA CTTTCTCCAA GGTCGA CCAA TCTCACAAACACAG CGGGAAGCCAATCCGGGCCTCAA CTCGG CTCAGACCCAGTG GA ATCCCCTC TCCTACACCCCCTCTACTCGTACGACCACCGAACTCATCGCCGGTCCAAACGTGCTTCCATAAGCCGCCATCTGACATGGGAAAGTAGGCGGTACACCGTGCTCCTCCCCTTGTCCAAGACCGGCA CACCAGCATCTCTGTCCCAA CAGGAAT TGTTGGTATGTCATCT TCTGCACACGCTGATCCTCCGGGTAGTGGAGGAAGAGGTGCCG GCCACGGGAAGGCCCTTCTCCG CG CTCCTCGACGAGCTTGGATCCGGTAGAACTCCCAGGCTTGTGTAGATCTTTGCGCAGCGCGCGAAATGCGCGAGCGTGCGG TATT ]
[+] EMBL CB646924 [ ATAAACAATTCGGTTATGAA ATCATAATACTTTGAGATCCCTCAAATTTCTTACAAACCTTTCTCCAACGGTCGACCCAACTCTCACAAACACAGCCGGGAAGCCAATCCGGGCCTCAACCTCGGCCTCAGACCCA TGCGACATCCCCTC TCCTACACCCCCTCTACTCGTACGACCACCGAACTCATCGCCGGTCCAAACGTGCTTCCATAAGCCGCCATCTGACATGGGAAAGTAGGCGGT CACCGTGCTCCTCCCCTTGTCCAAGACCGGCACCACCAGCATCTCTGTCCCAACCAGGAAT TGTTGGTATGTCATCT TCTGCACACGCTGATCCTCCGGGTAGTGGAGGAAGAGGTGCCGCGCCACGGGAAGGCCCTTCTCCGCCGCCTCCTCGACGAGC TGGATCCGGTAGAACTCCCAGGCTT TGTAGATCTTTGCGCAGCGCGCGAAATGCGCGAGCGTGCGGTTATTGGAGTAGAACTGGCAGTTGGATCCTGGCTTGTTACCCTCGTGGGTGCGGAAGACGACGGTGAAGGCGCTGAGCTCCAGCCATCGGAGGAGGAGCTCCTCGCTGCGGCGGTACCGGAGGAGCGGCAGGTCCACGGTGCAGTAGCCGCCGGCGTCGCCGTGGTT ]
[-] EMBL BM419297 [ GAA ATCATAATACTTTGAGATCCCTCAAATTTCTTACAAACCTTTCTCCAACGGTCGACCCAACTCTCACAAACACAGCCGGGAAGCCAATCCGGGCCTCAACCTCGG CTCAGACCCA TGCGANATCCCCTCGTCCTAGACCCCCTCTACTCGTACGACCACCGAACTCATCGCCGGTCCAAACGTGCTTCCATAAGCCGCCATCTGACATGGGAAAGTAGGCGGT CACCGTGCTCCTCCCCTTGTCCAAGACCGGCACCACCAGCATCTCTGTCCCAACCAGGAAT TGTTGGTATGTCATCTCTCTGCACACGCTGATCCTCCGGGTAGTGGAGGAAGAGGTGCCGCGCCACGGGAAGGCCCTTCTCCGCCG CTCCTCGACGAGC TGGATCCGGTAGAACTCCCAGGCTTATGTAG ]
[-] EMBL CB646923 [ AGCGGAGGAGCGGCAGGTCGACGGTGCAGTAGCCGCCGGCGTCGCCGTGGTTGAGCGGGAAGCCGGACATGCCGCCGGTGAGGAGGCCGACGACGCTGCTCTTGATGCCGTCGTTCGCCTGCCAGCTCACCATCTGGTCCCCTTCCCAGAACAGCATCGCCCACCTCGAGCTCTCCCTGAACCCCGCCCGCACGAAGAACACCAGCTCGCCGTCGCCGTCGCCGTCGTCGGCGTCGTCCGCGACGCGGCGGTGCTCGCCGGAGCGCCACTCGTCGGCGAACTCGCGGTTGACGCGCGCCCACAGCTCCGGGTACCGGTTGTGCGCCGCGACGGGGCCGTCGTCGCCGGAGCCGGAGGAGTGCAGCCGCGCGTTCAGCGGGAGGCCCTCGCCGAAGTCGGCCATCCAGCCGGCGGCGCCGCCGCGGGCCATCACGGCGAGGACCTCGCCCTTGAACCAGGCGCGCGCGGCCGGGTTGGTGAAGTCCAGCATGGCGACGTCGAACGCCGTGTTGGGCATCATGTACGGCTCGCCGGCGGCGTCCCGGACCAGGAGCCCCAGCTTCTTGGCCTCCTCGAACAGGTGCCTCCTCGCGTTCGCCTTCTTGTCCATCGGGACGAGGCATGGGTTGCAGTAGGTCATGGTCCTGACGCCGCGGCGCCGGAGATCGCGGACCAGATCATTCCATCCGGCGTAGTGGTCGTCGTCTACCTCCCAGTTCCACCATAGCTGGGATCCAATGGACGTCTTCCTC]
consensusID : consensus_10503#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 725 fasta sequence
[CGGGGCCGTCGTCGCCGGAGCCGGAGGAGTGCAGCCGCGCGTTCAGCGGGAGGCCTTCGCCGAAGTCGGCCATCCAGCCGGCGGCGCCGCCGCGGGCCATCACGGCGAGGACCTCGCCCTTGAACCAGGCGCGCGCGGCCGGGTTGGTGAAGTCCAGCATGGCGACGTCGAACGCCGTGTTGGGCATCATGTACGGCTCGCCGGCGGCGTCCCGGACCAGGAGCCCCAGCTTCTTGGCCTCCTCGAACAGGTGCCTCCTCGCGTTCGCCTTCTTGTCCATCTGCAGCCAGAATGCAGAGACCGGGACGTCGTGGTCCTGCAGCTGCTTCCAGACGCGGCGGACGGCGTCCGTGCCGCCCTGCATCCCGACCACCGCGCCGGACGTGATCCACCGGGGAAGAGCCGGCGGCCTCCCCGTCGACTCCGTGTAGCTCGTGATCAGCTCCGTCGGCGAGCCGCCGTGCAGGATCCTCCCCTGGACTGAACTCCCGTACACCTGAATCTGCACTCTATCAGGCTTTGTCAGGTCAAAAATGGAGTAATCGTATCCCTCGAGGTACAAAGATCTCATCTTTGAGGTCATGTAGAACGGAGACGGAGCATACGTAGTACTCCAGTTTCCTCCAGACCTATACATGACGAAACAAAGTAATAAACCACCATGAACAACAACATACTAAAAAATGCATATCAAGTTATCCAAAAGAAGAGAAGAAAAGTCGTAG]
[-] EMBL CB676025 [CGGGGCCGTCGTCGCCGGAGCCGGAGGAGTGCAGCCGCGCGTTCAGCGGGAGGCCTTCGCCGAAGTCGGCCATCCAGCCGGCGGCGCCGCCGCGGGCCATCACGGCGAGGACCTCGCCCTTGAACCAGGCGCGCGCGGCCGGGTTGGTGAAGTCCAGCATGGCGACGTCGAACGCCGTGTTGGGCATCATGTACGGCTCGCCGGCGGCGTCCCGGACCAGGAGCCCCAGCTTCTTGGCCTCCTCGAACAGGTGCCTCCTCGCGTTCGCCTTCTTGTCCATCTGCAGCCAGAATGCAGAGACCGGGACGTCGTGGTCCTGCAGCTGCTTCCAGACGCGGCGGACGGCGTCCGTGCCGCCCTGCATCCCGACCACCGCGCCGGACGTGATCCACCGGGGAAGAGCCGGCGGCCTCCCCGTCGACTCCGTGTAGCTCGTGATCAGCTCCGTCGGCGAGCCGCCGTGCAGGATCCTCCCCTGGACTGAACTCCCGTACACCTGAATCTGCACTCTATCAGGCTTTGTCAGGTCAAAAATGGAGTAATCGTATCCCTCGAGGTACAAAGATCTCATCTTTGAGGTCATGTAGAACGGAGACGGAGCATACGTAGTACTCCAGTTTCCTCCAGACCTATACATGACGAAACAAAGTAATAAACCACCATGAACAACAACATACTAAAAAATGCATATCAAGTTATCCAAAAGAAGAGAAGAAAAGTCGTAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10503#0 CCTTTTTTTTCTTTTTGAAACCCAAATTAAATTTCCTTTCTTTTCGTTGTATAAACAATT 60
consensus_10503#1 ------------------------------------------------------------
consensus_10503#0 GGTTATGAAATCATAATACTTTGAGATCCCTCAAATTTCTTACAAACCTTTCTCCAACGG 120
consensus_10503#1 ------------------------------------------------------------
consensus_10503#0 TCGACCCAACTCTCACAAACACAGCCGGGAAGCCAATCCGGGCCTCAACCTCGGCCTCAG 180
consensus_10503#1 ------------------------------------------------------------
consensus_10503#0 ACCCATGCGACATCCCCTCTCCTACACCCCCTCTACTCGTACGACCACCGAACTCATCGC 240
consensus_10503#1 ------------------------------------------------------------
consensus_10503#0 CGGTCCAAACGTGCTTCCATAAGCCGCCATCTGACATGGGAAAGTAGGCGGTCACCGTGC 300
consensus_10503#1 ------------------------------------------------------------
consensus_10503#0 TCCTCCCCTTGTCCAAGACCGGCACCACCAGCATCTCTGTCCCAACCAGGAATTGTTGGT 360
consensus_10503#1 ------------------------------------------------------------
consensus_10503#0 ATGTCATCTTCTGCACACGCTGATCCTCCGGGTAGTGGAGGAAGAGGTGCCGCGCCACGG 420
consensus_10503#1 ------------------------------------------------------------
consensus_10503#0 GAAGGCCCTTCTCCGCCGCCTCCTCGACGAGCTGGATCCGGTAGAACTCCCAGGCTTTGT 480
consensus_10503#1 ------------------------------------------------------------
consensus_10503#0 AGATCTTTGCGCAGCGCGCGAAATGCGCGAGCGTGCGGTTATTGGAGTAGAACTGGCAGT 540
consensus_10503#1 ------------------------------------------------------------
consensus_10503#0 TGGATCCTGGCTTGTTACCCTCGTGGGTGCGGAAGACGACGGTGAAGGCGCTGAGCTCCA 600
consensus_10503#1 ---------------------CGGGGCCGTCGTCGCCGGAGCCGGAGGAGTGCAGCCGC- 38
** ** * * * ** * * *** * *** *
consensus_10503#0 GCCATCGGAGGAGGAGCTCCTCGCTGCGGCGGTAGCGGAGGAGCGGCAGGTCGACGGTGC 660
consensus_10503#1 GCGTTCAGCG--GGAGGCCTTCGCCGAAGTCG---------GCCATCCAGCCGGCGGCGC 87
** ** * * **** * **** * * * * * * ** *** **
consensus_10503#0 AGTAGCCGCCGGCGTCGCCGTGGTTGAGCGGGAAGCCGGACATGCCGCCGGTGAGGAGGC 720
consensus_10503#1 CGCCGCGGGC--CATCACGGCGAG-GACCTCGCCCTTGAACCAGGCGCGCGCGGCCGGGT 144
* ** * * * ** * * * ** * * * ** * *** * * **
consensus_10503#0 CGACGACGCTGCTCTTGATGCCGTCGTTCGCCTGCCAGCTCACCATCTGGTCCCCTTCCC 780
consensus_10503#1 TGGTGAAGTCCAGCATGGCGACGTCGAACGCCGTGTTGGGCATCATGTA--CGGCTCGCC 202
* ** * * ** * ***** **** * ** *** * * ** **
consensus_10503#0 AGAACAGCATCGCCCACCTCAAGCTCTCCCTGAACCCCGCCCGCACGAAGAA-CACCAGC 839
consensus_10503#1 GG--CGGCGTCCCGGACCAGGAGCCCCAGCTT--CTTGGCCTCCTCGAACAGGTGCCTCC 258
* * ** ** * *** *** * ** * *** * **** * ** *
consensus_10503#0 TCGCCGTCGCCGTCGCCGTCGTCGGCGTCGTCCGCGACGCGGCGGTGCTCGCCGGAGCGC 899
consensus_10503#1 TCGCGTTCGCCTTCTTGTCCATCTGCAG---CCAGAATGCAGAGA------CCGGGACGT 309
**** ***** ** * ** ** ** * ** * * **** **
consensus_10503#0 CACTCGTCGGCGAACTCGCGGTTGACGCGCGCCCACAGCTCCGGGTACCGGTTGTGCGCC 959
consensus_10503#1 C--------GTGGTCCTGCAGCTG-CTTCCAGACGCGGCGGACGGCGTCCGTGCCGCCCT 360
* * * * ** * ** * * * * ** ** * ** ** *
consensus_10503#0 GCGACGGGGCCGTCGTCGCCGGAGCCGGAGGAGTGCAGCCGCGCGTTCAGCGGGAGGCCC 1019
consensus_10503#1 GCATCCCGACCACCG-CGCCGGACGTGATCCACCGGGGAAGAGC---CGGCGGCC--TCC 414
** * * ** ** ******* * * * * * ** * **** **
consensus_10503#0 TCGCCGAAGTCGGCCATCCAGCCGGCGGCGCCGCCG-CGGGCCATCACGGCGAGGACCTC 1078
consensus_10503#1 CCGTCGACTCCGTGTAGCTCGTGATCAGCTCCGTCGGCGAGCCGCCGTGC--AGGATCCT 472
** *** ** * * * * ** *** ** ** *** * * **** *
consensus_10503#0 GCCCTTGAACCAGGCGCGCGCGGCCGGGTTGGTGAAGTCCAGCATGGCGACGTCGAACGC 1138
consensus_10503#1 -CCCCTGGACTGAACTCCCGTACACCTGAATCTGCACTCTATCA-GGCTTTGTCAGGTCA 530
*** ** ** * * ** * * ** * ** * ** *** ***
consensus_10503#0 CGTGTTGGGCATCATGTACGGCTCGCCG-GCGGCGTCCCGGACCAGGAGCCCCAGCTTCT 1197
consensus_10503#1 AAAATGGAGTAAT-CGTATCCCTCGAGGTACAAAGATCTCATCTTTGAGGTCATGTAGAA 589
* * * * *** **** * * * * * *** * *
consensus_10503#0 TGGCCTCCTCGAACAGGTGCCTCCTCGCGTTCGCCTTCTTGTCCAT-CGGGACGAGGCAT 1256
consensus_10503#1 CGGAGACGGAGCATACGTAGTACTCCAGTTTC--CTCCAGACCTATACATGACGAAACAA 647
** * * * * ** * * *** ** * * ** * ***** **
consensus_10503#0 GGGTTGCAGTAGGTCATGGTCCTGACGCCGCGGCGCCGGAGATCGCGGACCAGATCATTC 1316
consensus_10503#1 AG----TAATAAACCACCAT--GAACAACAACATACTAAAAAATGCATATCAAGTTATCC 701
* * ** ** * ** * * * * ** * ** * ** *
consensus_10503#0 CATCCGGCGTAGTGGTCGTCGTCTACCTCCCAGTTCCACCATAGCTGGGATCCAATGGAC 1376
consensus_10503#1 AAAAGAAGAGAAGAAAAGTCGTAG------------------------------------ 725
* * *****
consensus_10503#0 GTCTTCCTC 1385
consensus_10503#1 ---------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||