These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10510#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1131 fasta sequence [GNCCNNNTGNGNGNNGCCCCCCGGGGTTTTTTGGGGGGGGGGGNGGGAACCCNNCGGGAAACGGTGGTTNGNGGGGNGGAAATGTGAGCCCCCCCGGCGAGGCGTACGTGGACTCGCTGTTCGACCTGGAGCCGCC-GGGGCGGGGGAAGAGGCTCGGC-GAGGACGAGCTGGTGACGCTCTGCTCC-GAGGTGATGAGCGCCGGC-ACGG-ACACCAGCGCCACCGCGCTGGAGTGGGCCATGATGC-ACCTCGTCCTCGACGCCGGCGTCCAGGACAAGCTCTACGGCGAGGTCGTCTCCAAGGTCGGCACCACCGCGCGCATCACCGAGGCCGACGTCGAGGCCATGCCCTACTTGCAGGCGGTGGTGAAGGAGACATTCCGGCGACACCCGCCGAGCCACTTCGTGCTGTCGCACGCGGCGACGAGGGACACGGAGCTCGGCGGGTACCGCGTGCCGGCGGACGCCAGCGTGGAGTTCTACACGGCGTGGGTGACGGAGAACCCGGCGACGTGGCCGGACCCGGAGGCGTGGCGCCCCGAGCGGTTCCTCGAGGGCGGCGAGGGCTTCGACACCGACATCACCGCCACCCGCGCCCTCCGCATGATGCCGTTCGGCGCCGGCCGCCGCATCTGCCCCGCCGCCACCCTCGGCGTCCTCCACATCCAGCTCATGCTCGCCAACATGGTCCGCGAGTTCCGCTGGGTCCCGCCCGCCGGCGAGGGCCCCCCCGACCCCACCGAGACCTTCGCCTTCACCGTCGTCATGAAGAACCCGCTCCGCGCCGCCCTCGTCGAGCGCCGCGTCGGCGGCG-AG-C--TCGCC-ACC--GGCGGCG-G-AGGCGGCG-CCGC-CGCG-TCCGCCTAATTAAGTACTACGATATAAATACTTCGGTAGCTGCTGTCCGTTGGATGGCGGATGGACGGACGGATGGATGGATATGCAGATGATGTCTTAAATTTTTACTTAAATAGAGTGTTCTCTTGATATCTTCTTCTTCTTTGATTTTTTTTTGTTTTATTAGTGGATCTCTTTTTTCTTTTCTCTCTTGTTTTTATCCAGGATTAAGTGTACCTACTGCTGCTTGATCTGCTCATATATATATTGGTTTCCAAGTCGAGAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AA753883 [GNCCNNNTGNGNGNNGCCCCCCGGGGTTTTTTGGGGGGGGGGGNGGGAACCCNNCGGGAAACGGTGGTTNGNGGGGNGGAAATGTGAGCCCCCCCGGCGAGG GAANGNGGATTNNTTTTTNGANTTGGACCCNCCNGGGGCGGGGGAAGAGGTTNGGCGGAGGACGAGCTGGTGACTTTTTGTTCCGGAGGTGATGAGCGCCGGCAACGGAACACCAGCGCCACCGCG TGGAGTGGGCCATGATGCAACTTCNTCTTCGACGCCGGCGTCCAGGACAAGCTNTACGGCGAGGTCGTCTCCAAGGTCGGCACCACCGCGCGCATCACCGAGGCCGACGTCGAGGCCATGCCCTACTTGCAGGCGGTGGTGAAGGAGACATTCCGGCGACACCCGCCGAGCCACTTCGTGCTGTCGCACGCGGCGACGAGGGACACGGAGCTCGGCGGGTACCGCGTGCCGGCGGACGCCAGCGTGGAGTTCTACACGGCGTGGGTGACGGAGAACCCGGCGACGTGGCCGGACCCGGAGGCGTGGCGCCC ] [+] EMBL AK064920 [ GGCGAGGCGTACGTGGACTCGCTGTTCGACCTGGAGCCGCC GGGGCGGGGGAAGAGGCTCGGC GAGGACGAGCTGGTGACGCTCTGCTCC GAGGTGATGAGCGCCGGC ACGG ACACCAGCGCCACCGCGCTGGAGTGGGCCATGATGC ACCTCGTCCTCGACGCCGGCGTCCAGGACAAGCTCTACGGCGAGGTCGTCTCCAAGGTCGGCACCACCGCGCGCATCACCGAGGCCGACGTCGAGGCCATGCCCTACTTGCAGGCGGTGGTGAAGGAGACATTCCGGCGACACCCGCCGAGCCACTTCGTGCTGTCGCACGCGGCGACGAGGGACACGGAGCTCGGCGGGTACCGCGTGCCGGCGGACGCCAGCGTGGAGTTCTACACGGCGTGGGTGACGGAGAACCCGGCGACGTGGCCGGACCCGGAGGCGTGGCGCCCCGAGCGGTTCCTCGAGGGCGGCGAGGGCTTCGACACCGACATCACCGCCACCCGCGCCCTCCGCATGATGCCGTTCGGCGCCGGCCGCCGCATCTGCCCCGCCGCCACCCTCGGCGTCCTCCACATCCAGCTCATGCTCGCCAACATGGTCCGCGAGTTCCGCTGGGTCCCGCCCGCCGGCGAGGGCCCCCCCGACCCCACCGAGACCTTCGCCTTCACCGTCGTCATGAAGAACCCGCTCCGCGCCGCCCTCGTCGAGCGCCGCGTCGGCGGCG AG C TCGCC ACC GGCGGCG G AGGCGGCG CCGC CGCG TCCGCCTAATTAAGTACTACGATATAAATACTTCGGTAGCTGCTGTCCGTTGGATGGCGGATGGACGGACGGATGGATGGATATGCAGATGATGTCTTAAATTTTTACTTAAATAGAGTGTTCTCTTGATATCTTCTTCTTCTTTGATTTTTTTTTGTTTTATTAGTGGATCTCTTTTTTCTTTTCTCTCTTGTTTTTATCCAGGATTAAGTGTACCTACTGCTGCTTGATCTGCTCATATATAT ] [+] EMBL OSS4175A [ GGCGAGGCGTACGTGGACTCGCTGTTCGACCTGGAGCCGCC GGGGCGGGGGAAGAGGCTCGGC GAGGACGAGCTGGTGACGCTCTGCTCC GAGGTGATGAGCGCCGGC ACGT ACACCAGCGCCACCGCGCTGTAGTGGGCCATGATGC ACCTNGTCCTCGACGCCGNCGTCCAGGACAAGCTCTACGNCGAGGTCGTCTCCAAGGTCGGNAACACCGTGCGCATCACCGAGGCCGACGTCGAGGCCATG CCTACTT ] [+] EMBL AU166735 [ TCATGCTCGCCAACATGGTCCGCGAGTTCCGCTGGGTCCCGCCCGCCGGCGAGGGCCCCCCCGACCCCACCGAGACCTTCGCCTTCACCGTCGTCATGAAGAACCCGCTCCGCGCCGCCCTCGTCGAGCGCCGCGTCGGCGGCG AG C TCGCC ACC GGCGGCG G AGGCGGCG CCGC CGCG TCCGCCTAATTAAGTACTACGATATAAATACTTCGGTAGCTGCTGTCCGTTGGATGGCGGATGGACGGACGGATGGATGGATATGCAGATGATGTCTTAAATTTTTACTTAAATAGAGTGTTCTCTTGATATCTTCTTCTTCTTTGATTTTTTTTTGTTTTATTAGTGGATCTCTTTTTTCTTTTCTCTCTTGTTTTTATCCAGGATTAAGTGTACCTACTGCTGCTTGATCTGCTCATATATATATTGGTTTCCAAGTCGAGAAA ] [+] EMBL AU097354 [ nGCGGCGTAGNCTTTCGCCTACCCTGGCGGCGTGTATGCGGCGTCCGCTCGCGTTCCGCCTAATTAAGTACTACGATATAAATACTTCGGTAGCTGCTGTCCGTTGGATGGCGGATGGACGGACGGATGGATGGATATGCAGATGATGTCTTAAATTTTTACTTAAATAGAGTGTTCTCTTGATATCTTCTTCTTCTTTGATTTTTTTTTGTTTTATTAGTGGATCTCTTTTTTCTTTTCTCTCTTGTTTTTATCCAGGATTAAGTGTACCTACTGCTGCTTGATCTGCTCATATATATATTGGTTTCCAAGTCGAGAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_10510#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 587 fasta sequence [ANATATATTTGTTTTTTANGAAACAACGGGAGTAAACNATTTTAAAAAAAAAAGTTGTATTGTAGTTTGGAATCTGGTTATAACGCTGTCCAAANTCATACTATAATTTGTTTTTCTTGTGAGACAGAGAAGCAGTTCGCTTCATTTCATTGTATAATAAAATGAAAAAAAAATGAAAAAAAAAAGAAGATACGGGTGATGGGGAATTGGGGATATGCTGAATTGCTAACCGAAATGGATGGATTCGCGGCGCTCGATCGCCGGCGTGCGCATGTGCAGGCGGTGGTGAAGGAGACATTCCGGCGACACCCGCCGAGCCACTTCGTGCTGTCGCACGCGGCGACGAGGGACACGGAGCTCGGCGGGTACCGCGTGCCGGCGGACGCCAGCGTGGAGTTCTACACGGCGTGGGTGACGGAGAACCCGGCGACGTGGCCGGACCCGGAGGCGTGGCGCCCCGAGCGGTTCCTCGAGGGCGGCGAGGGCTTCGACACCGACATCACCGCCACCCGCGCCCTCCGCATGATGCCGTTCGGCGCGGGCGCCGCATCTGCCCCGCCGCCACCCTCGGCGTTCTCCACATTCAG] [+] EMBL AA753996 [ANATATATTTGTTTTTTANGAAACAACGGGAGTAAACNATTTTAAAAAAAAAAGTTGTATTGTAGTTTGGAATCTGGTTATAACGCTGTCCAAANTCATACTATAATTTGTTTTTCTTGTGAGACAGAGAAGCAGTTCGCTTCATTTCATTGTATAATAAAATGAAAAAAAAATGAAAAAAAAAAGAAGATACGGGTGATGGGGAATTGGGGATATGCTGAATTGCTAACCGAAATGGATGGATTCGCGGCGCTCGATCGCCGGCGTGCGCATGTGCAGGCGGTGGTGAAGGAGACATTCCGGCGACACCCGCCGAGCCACTTCGTGCTGTCGCACGCGGCGACGAGGGACACGGAGCTCGGCGGGTACCGCGTGCCGGCGGACGCCAGCGTGGAGTTCTACACGGCGTGGGTGACGGAGAACCCGGCGACGTGGCCGGACCCGGAGGCGTGGCGCCC ] [+] EMBL AU225574 [ gccgcTCATTGTATAATAAAATGAAAAAAAAATGAAAAAAAAAAGAAGATACGGGTGATGGGGAATTGGGGATATGCTGAATTGCTAACCGAAATGGATGGATTCGCGGCGCTCGATCGCCGGCGTGCGCATGTGCAGGCGGTGGTGAAGGAGACATTCCGGCGACACCCGCCGAGCCACTTCGTGCTGTCGCACGCGGCGACGAGGGACACGGAGCTCGGCGGGTACCGCGTGCCGGCGGACGCCAGCGTGGAGTTCTACACGGCGTGGGTGACGGAGAACCCGGCGACGTGGCCGGACCCGGAGGCGTGGCGCCCCGAGCGGTTCCTCGAGGGCGGCGAGGGCTTCGACACCGACATCACCGCCACCCGCGCCCTCCGCATGATGCCGTTCGGCGCGGGCGCCGCATCTGCCCCGCCGCCACCCTCGGCGTTCTCCACATTCAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10510#0 GNCCNNNTGNGNGNNGCCCCCCGGGGTTTTTTGGGGGGGGGGGNGGGAACCCNNCGGGAA 60 consensus_10510#1 --------------------------------------------------------ANAT 4 * consensus_10510#0 ACGGTGGTTNGNGGGGNGGAAATGTGAGCCCCCCCGGCGAGGCGTACGTGGACTCGCTGT 120 consensus_10510#1 ATATTTGTTTTTTANGAAACAACGGGAGTAAACNATTTTAAA---AAAAAAAGTTGTATT 61 * * *** * ** * *** * * * * * * * consensus_10510#0 TCGACCTGGAGCC--GCCGGGGCGGGGGAAGAGGCTCGGCGAGGACGAGCTGGTGACGCT 178 consensus_10510#1 GTAGTTTGGAATCTGGTTATAACGCTGTCCAAANTCATACTATAATTTGTTTTTCTTGTG 121 **** * * ** * * * * * * * * * consensus_10510#0 CTGCTCCGAGGTGATGAGCGCCGGCACGGACACCAGCGCCACCGCGCTGGAGTGGGCCAT 238 consensus_10510#1 AGACAGAGAAGCAGTTCGCTTCATTTCATTGTATAATAAAATGAAAAAAAAATGAAAAAA 181 * ** * * ** * * * * * ** * consensus_10510#0 GATGCACCTCGTCCTCGACGCCGGCGTCCAGGACAAGCTCTACGGCGAGGTCGTCTCCAA 298 consensus_10510#1 AAAAGAAGATACGGGTGATGG-GGAATTGGGGATATGCTGAATTGCTA----ACCGAAAT 236 * * ** * ** * *** * *** * ** * * * consensus_10510#0 GGTCGGCACCACCGCGCGCATCACCGAGGCCGACGTCGAGGCCATGCCCTACTTGCAGGC 358 consensus_10510#1 GGATGGATTCGCGGCGCTC--------GATCGCCGGCGTGCGCATG-------TGCAGGC 281 ** ** * * **** * * ** ** ** * **** ******* consensus_10510#0 GGTGGTGAAGGAGACATTCCGGCGACACCCGCCGAGCCACTTCGTGCTGTCGCACGCGGC 418 consensus_10510#1 GGTGGTGAAGGAGACATTCCGGCGACACCCGCCGAGCCACTTCGTGCTGTCGCACGCGGC 341 ************************************************************ consensus_10510#0 GACGAGGGACACGGAGCTCGGCGGGTACCGCGTGCCGGCGGACGCCAGCGTGGAGTTCTA 478 consensus_10510#1 GACGAGGGACACGGAGCTCGGCGGGTACCGCGTGCCGGCGGACGCCAGCGTGGAGTTCTA 401 ************************************************************ consensus_10510#0 CACGGCGTGGGTGACGGAGAACCCGGCGACGTGGCCGGACCCGGAGGCGTGGCGCCCCGA 538 consensus_10510#1 CACGGCGTGGGTGACGGAGAACCCGGCGACGTGGCCGGACCCGGAGGCGTGGCGCCCCGA 461 ************************************************************ consensus_10510#0 GCGGTTCCTCGAGGGCGGCGAGGGCTTCGACACCGACATCACCGCCACCCGCGCCCTCCG 598 consensus_10510#1 GCGGTTCCTCGAGGGCGGCGAGGGCTTCGACACCGACATCACCGCCACCCGCGCCCTCCG 521 ************************************************************ consensus_10510#0 CATGATGCCGTTCGGCGCCGGCCGCCGCATCTGCCCCGCCGCCACCCTCGGCGTCCTCCA 658 consensus_10510#1 CATGATGCCGTTCGGCGC-GGGCGCCGCATCTGCCCCGCCGCCACCCTCGGCGTTCTCCA 580 ****************** ** ******************************** ***** consensus_10510#0 CATCCAGCTCATGCTCGCCAACATGGTCCGCGAGTTCCGCTGGGTCCCGCCCGCCGGCGA 718 consensus_10510#1 CATTCAG----------------------------------------------------- 587 *** *** consensus_10510#0 GGGCCCCCCCGACCCCACCGAGACCTTCGCCTTCACCGTCGTCATGAAGAACCCGCTCCG 778 consensus_10510#1 ------------------------------------------------------------ consensus_10510#0 CGCCGCCCTCGTCGAGCGCCGCGTCGGCGGCGAGCTCGCCACCGGCGGCGGAGGCGGCGC 838 consensus_10510#1 ------------------------------------------------------------ consensus_10510#0 CGCCGCGTCCGCCTAATTAAGTACTACGATATAAATACTTCGGTAGCTGCTGTCCGTTGG 898 consensus_10510#1 ------------------------------------------------------------ consensus_10510#0 ATGGCGGATGGACGGACGGATGGATGGATATGCAGATGATGTCTTAAATTTTTACTTAAA 958 consensus_10510#1 ------------------------------------------------------------ consensus_10510#0 TAGAGTGTTCTCTTGATATCTTCTTCTTCTTTGATTTTTTTTTGTTTTATTAGTGGATCT 1018 consensus_10510#1 ------------------------------------------------------------ consensus_10510#0 CTTTTTTCTTTTCTCTCTTGTTTTTATCCAGGATTAAGTGTACCTACTGCTGCTTGATCT 1078 consensus_10510#1 ------------------------------------------------------------ consensus_10510#0 GCTCATATATATATTGGTTTCCAAGTCGAGAAAAAAAAAAAAAAAAAAAAAAA 1131 consensus_10510#1 ----------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||