These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10526#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 935 fasta sequence [GCTCCCCACACGTTTTCTTCTCCCCCTCCACATCTCCCCTCTCGCCGCCGCCGCCGCCGCATNCCGTTCAGGGACTTCTCCGCCGGCGCCATGGCTGCCGCTGCAAGGTTCTTGGCGGTCTTGCTCCTCGTTCTTGCTGTCGCGGCGGCGTCTTCCGCGGCGGCGTCGTTNGCTGGCGGCGGCGACCG-CACCTGCAGCTGGGGATGCTGTCCACCGGCGGCGAGTNTCGGGGGCACGGTGGGGGACTGCCTTGAAGGGGGAGACGTCGACGGCGTTATGATGAGCTATCTTTCTTCCTCTGCCTCGTGATTCTCACTCTTTAACTTCTTCTTGCTACGGCTACCTTATTTCACTTTTTTCTTCCTTTTGACATCTTTCCTTGTCATTTTCTCTTACCTCAGCATTGTCATTATATTCTCTTACTCAATCTCAACCTCCAATTTACGTTTCTCGATTTCGATTTACACTTCTAATTGTGATATTCTTTCTCTTTTCTATATTTCTATCTCGCCTTTCTATCCTCGCCGTCCTATAAGATATTTTACAGCCTACCCTTTTTATTTTTTCCACGCTTACCATTCTATCTAATATCAATTATCTCTTTCACTCTTATTGTATATCTCGCACTTTCTGCTCTGGCTTATATCCATCTTCTCTAGCTTCTGTTTTTCTCTCTATCTGCTATCCTTCAATTCTTTTTTTACTTGTTGATCCTTTTTTATCGGCATACTGCGTGCGTAATGTAAACTTGTATGATATTTTCACTCTCTTAATCTAGCATCTCATTTATCTGTTTTTCGTTCGTCCTGTCTTTCCACCATACATTTATATACTCTACTCCATTTATCTGTGCTCCACCTTCGTCTTCCTTCCTGAAACTTTCTAGTTTCTTCCCGTCTGTCTAATATGATTATTCTAACTCCTGATGCACTGCG] [+] EMBL C74732 [GCTCCCCACACGTTTTCTTCTCCCCCTCCACATCTCCCCTCTCGCCGCCGCCGCCGCCGCATNCCGTTCAGGGACTTCTCCGCCGGCGCCATGGCTGCCGCTGCAAGGTTCTTGGCGGTCTTGCTCCTCGTTCTTGCTGTCGCGGCGGCGTCTTCCGCGGCGGCGTCGTTNGCTGGCGGCGGCGACCG CACCTGCAGCTGGGGATGCTGTCCACCGGCGGCGAGTNTCGGGGGCACGGTGGGGGACTGCCTTGAAGGGGGAGACGTCGACGGCG ] [+] EMBL BE040595 [ CCGCCGCCGCCGCCGCATTCCGTTCAGGGACTTCTCCGCCGGCGCCATGGCTGCCGCTGCAAGGTTCTTGGCGGTCTTGCTCCTCGTTCTTGCTGTCGCGGCGGCGTCTTCCGCGGCGGCGTCGTTGGCTGGCGGCGGCGACCGCCACCTGCAGCTGGGGATGCTGTCCACCGGCGGCGAGT GCCGGGGCACGGTGGGGGAGTGCCTTGAGGGGGGAGACGTTAAC TCGTTATGATGAGCTATCTTTCTTCCTCTGCCTCGTGATTCTCACTCTTTAACTTCTTCTTGCTACGGCTACCTTATTTCACTTTTTTCTTCCTTTTGACATCTTTCCTTGTCATTTTCTCTTACCTCAGCATTGTCATTATATTCTCTTACTCAATCTCAACCTCCAATTTACGTTTCTCGATTTCGATTTACACTTCTAATTGTGATATTCTTTCTCTTTTCTATATTTCTATCTCGCCTTTCTATCCTCGCCGTCCTATAAGATATTTTACAGCCTACCCTTTTTATTTTTTCCACGCTTACCATTCTATCTAATATCAATTATCTCTTTCACTCTTATTGTATATCTCGCACTTTCTGCTCTGGCTTATATCCATCTTCTCTAGCTTCTGTTTTTCTCTCTATCTGCTATCCTTCAATTCTTTTTTTACTTGTTGATCCTTTTTTATCGGCATACTGCGTGCGTAATGTAAACTTGTATGATATTTTCACTCTCTTAATCTAGCATCTCATTTATCTGTTTTTCGTTCGTCCTGTCTTTCCACCATACATTTATATACTCTACTCCATTTATCTGTGCTCCACCTTCGTCTTCCTTCCTGAAACTTTCTAGTTTCTTCCCGTCTGTCTAATATGATTATTCTAACTCCTGATGCACTGCG] consensusID : consensus_10526#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 879 fasta sequence [TCTCTCTTCTCCACCACCACCTCCATCTCGCAGTCGCAGTGCCAGCTAAGGCCTTGTACAGGGCTTCGCTCCCCACACGTTTTCTTCTCCCCCTCCACATCTCCCCTCTCGCCGCCGCCGCCGCCGCATTCCGTTCAGGGACTTCTCCGCCGGCGCCATGGCTGCCGCTGCAAGGTTCTTGGCGGTCTTGCTCCTCGTTCTTGCTGTCGCGGCGGCGTCTTCCGCGGCGGCGTCGTTGGCTGGCGGCGGCGACCGCCACCTGCAGCTGGGGATGCTGTCCACCGGCGGCGAGTGCCGGGGCACGGTGGGGGAGTGCCTTGAGGGGGGAGACGTCGACGGCGAGGAGGGGGAGCTCGGGTCGGCGTCCGGCGAGGCGCACCGCCGCGTGCTCGCCGGGAGAGGGTACATCAGCTACCAGTCGCTGCGCCGCGACAGCGTGCCGTGCTCTCGCCGCGGCGCCAGCTACTACAACTGTCGCCCCGGCGCCTCCGCCAACCCCTACCACCGCGGCTGCTCCCGCAT-CACCCGCTGCCGCGGCTGATCTCCTCCTCCTCCTCCTCCTCCTCCTGCGCCGCCGCCGCTGGATCCGCCGGAGAAGATGGCATCGTCGTCGCCAGGTTAAAATACAAAAAAAAAGAGAGGAAAAAACAAAATAATCGAGCTGTTGTTCTTGTGTTCTTGCAGTGCCACTACTCCTACCTCTACTATTTATTACTATTAGCTACTACTATTAATTAATATATTCCTTTGTTTGATTTGCTGCTGCTAATGATGCTGCTGTTGTATTTGGGATCTTATTGTTTGTGCTTTGTAAAGTAAGAGAGATTTGTGCCCCACTATGGCTGGCTTAATTATCAAGAGATATATATTCTTTCTTAT] [+] EMBL AK103420 [TCTCTCTTCTCCACCACCACCTCCATCTCGCAGTCGCAGTGCCAGCTAAGGCCTTGTACAGGGCTTCGCTCCCCACACGTTTTCTTCTCCCCCTCCACATCTCCCCTCTCGCCGCCGCCGCCGCCGCATTCCGTTCAGGGACTTCTCCGCCGGCGCCATGGCTGCCGCTGCAAGGTTCTTGGCGGTCTTGCTCCTCGTTCTTGCTGTCGCGGCGGCGTCTTCCGCGGCGGCGTCGTTGGCTGGCGGCGGCGACCGCCACCTGCAGCTGGGGATGCTGTCCACCGGCGGCGAGTGCCGGGGCACGGTGGGGGAGTGCCTTGAGGGGGGAGACGTCGACGGCGAGGAGGGGGAGCTCGGGTCGGCGTCCGGCGAGGCGCACCGCCGCGTGCTCGCCGGGAGAGGGTACATCAGCTACCAGTCGCTGCGCCGCGACAGCGTGCCGTGCTCTCGCCGCGGCGCCAGCTACTACAACTGTCGCCCCGGCGCCTCCGCCAACCCCTACCACCGCGGCTGCTCCCGCAT CACCCGCTGCCGCGGCTGATCTCCTCCTCCTCCTCCTCCTCCTCCTGCGCCGCCGCCGCTGGATCCGCCGGAGAAGATGGCATCGTCGTCGCCAGGTTAAAATACAAAAAAAAAGAGAGGAAAAAACAAAATAATCGAGCTGTTGTTCTTGTGTTCTTGCAGTGCCACTACTCCTACCTCTACTATTTATTACTATTAGCTACTACTATTAATTAATATATTCCTTTGTTTGATTTGCTGCTGCTAATGATGCTGCTGTTGTATTTGGGATCTTATTGTTTGTGCTTTGTAAAGTAAGAGAGATTTGTGCCCCACTATGGCTGGCTTAATTATCAAGAGATATATATTCTTTCTTAT] [+] EMBL AU029368 [ GCAGTGCCAGCTAAGGCCTTGTACAGGGCTTCGCTCCCCACACGTTTTCTTCTCCCCCTCCACATCTCCCCTCTCGCCGCAGNAGCCGCCGCATTCCGTTCAGGGACTTCTCCGCCGGCGCCATGGCTGCCGCTGCAAGGTTCTTGGCGGTCTTGCTCCTCGTTCTTGCTGTCGCGGCGGCGTCTTCCGCGGCGGCGTCGTTGGCTGGCGGCGGCGACCGCCACCTGCAGCTGGGGATGCTGTCCACCGGCGGCGAGTGCCGGGGCACGGTGGG ] [+] EMBL BE040758 [ TTCTTGCTGTCGCGGCGGCGTCTTCCGCGGCGGCGTCGTTGGCTGGCGGCGGCGACCGCCACCTGCAGCTGGGGATGCTGTCCACCGGCGGCGAGTGCCGGGGCACGGTGGGGGAGTGCCTTGAGGGGGGAGACGTCGACGGCGAGGAGGGGGAGCTCGGGTCGGCGTCCGGCGAGGCGCACCGCCGCGTGCTCGCCGGGAGAGGGTACATCAGCTACCAGTCGCTGCGCCGCGACAGCGTGCCGTGCTCTCGCCGCGGCGCCAGCTACTACAACTGTCGCCCCGGCGCCTCCGTCAACCCCTACCACCGCGGCTGCTCCCGCAT CACCCGCTGCCGCGGCTGATCT ] [+] EMBL AU162253 [ CCACCGCGGCTGCTCCCGCATCCATCNCCTGCCGCGGNTGATCTCCTCCTCNTCCNCCCCCTCCTCCTGCGCCGCCGCCGCTGGATCCGCCGGAGAAGATGGCATCGTCGTCGCCAGGTTAAAATACAAAAAAAAAGAGAGGAAAAAACAAAATAATCGAGCTGTTGTTCTTGTGTTCTTGCAGTGCCACTACTCCTACCTCTACTATTTATTACTATTAGCTACTACTATTAATTAATATATTCCTTTGTTTGATTTGCTGCTGCTAATGATGCTGCTGTTGTATTTGGGATCTTATTGTTTGTGCTTTGTAAAGTAAGAGAGATTTGTGCCCCANTATGGNTGGCTTAAaaaaa ] consensusID : consensus_10526#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 695 fasta sequence [ACATCTCCCCTCTCGCCGCCGCCGCCGCCGCATTCCGTTCAGGGACTTCTCCGCCGGCGCCATGGCTGCCGCTGCAAGGTTCTTGGCGGTCTTGCTCCTCGTTCTTGCTGTCGCGGCGGCGTCTTCCGCGGCGGCGTCGTTGGCTGGCGGCGGCGACCGCCACCTGCAGCTGGGGATGCTGTCCACCGGCGGCGAGTGCCGGGGCACGGTGGGGGAGTGCCTTGAGGGGGGAGACGTCGACGGCGAGGAGGGGGAGCTCGGGTCGGCGTCCGGCGAGGCGCACCGCCGCGTGCTCGCCGGGAGAGGGTACATCAGCTACCAGTCGCTGCGCCGCGACAGCGTGCCGTGCTCTCGCCGCGGTGCCAGCTACTACAACTGTTGTCCCGGCGCCTTCGTCAACCCCTACCACCGTGGTTGCTTCCCTATCACCCGTTGCCGCGGCTGATCTCCTTCTACTCCTTCTAACTTCGCCGATCTCCATGGATCCGTCCGGAAAGATGGCATTCTCTCTTCCCGTTTAAAATGCAAAAACAAAAGAGAGGAACTAACCAAATTAACCTTATCTGTTGTCTTTTGTGTTTTTGCACTGCCACTACCTCCGACCCTCTACATTTCATTACTTTGAGCTCCCTTTTCTTAATAAAACAATTTCTTTGCTCTGATCTGCATCCGCTTAAGATGCCTCCTCTTGTNTC] [+] EMBL BE041045 [ACATCTCCCCTCTCGCCGCCGCCGCCGCCGCATTCCGTTCAGGGACTTCTCCGCCGGCGCCATGGCTGCCGCTGCAAGGTTCTTGGCGGTCTTGCTCCTCGTTCTTGCTGTCGCGGCGGCGTCTTCCGCGGCGGCGTCGTTGGCTGGCGGCGGCGACCGCCACCTGCAGCTGGGGATGCTGTCCACCGGCGGCGAGTGCCGGGGCACGGTGGGGGAGTGCCTTGAGGGGGGAGACGTCGACGGCGAGGAGGGGGAGCTCGGGTCGGCGTCCGGCGAGGCGCACCGCCGCGTGCTCGCCGGGAGAGGGTACATCAGCTACCAGTCGCTGCGCCGCGACAGCGTGCCGTGCTCTCGCCGCGGTGCCAGCTACTACAACTGTTGTCCCGGCGCCTTCGTCAACCCCTACCACCGTGGTTGCTTCCCTATCACCCGTTGCCGCGGCTGATCTCCTTCTACTCCTTCTAACTTCGCCGATCTCCATGGATCCGTCCGGAAAGATGGCATTCTCTCTTCCCGTTTAAAATGCAAAAACAAAAGAGAGGAACTAACCAAATTAACCTTATCTGTTGTCTTTTGTGTTTTTGCACTGCCACTACCTCCGACCCTCTACATTTCATTACTTTGAGCTCCCTTTTCTTAATAAAACAATTTCTTTGCTCTGATCTGCATCCGCTTAAGATGCCTCCTCTTGTNTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10526#1 TCTCTCTTCTCCACCACCACCTCCATCTCGCAGTCGCAGTGCCAGCTAAGGCCTTGTACA 60 consensus_10526#2 ------------------------------------------------------------ consensus_10526#0 ------------------------------------------------------------ consensus_10526#1 GGGCTTCGCTCCCCACACGTTTTCTTCTCCCCCTCCACATCTCCCCTCTCGCCGCCGCCG 120 consensus_10526#2 ------------------------------------ACATCTCCCCTCTCGCCGCCGCCG 24 consensus_10526#0 -------GCTCCCCACACGTTTTCTTCTCCCCCTCCACATCTCCCCTCTCGCCGCCGCCG 53 ************************ consensus_10526#1 CCGCCGCATTCCGTTCAGGGACTTCTCCGCCGGCGCCATGGCTGCCGCTGCAAGGTTCTT 180 consensus_10526#2 CCGCCGCATTCCGTTCAGGGACTTCTCCGCCGGCGCCATGGCTGCCGCTGCAAGGTTCTT 84 consensus_10526#0 CCGCCGCATNCCGTTCAGGGACTTCTCCGCCGGCGCCATGGCTGCCGCTGCAAGGTTCTT 113 ********* ************************************************** consensus_10526#1 GGCGGTCTTGCTCCTCGTTCTTGCTGTCGCGGCGGCGTCTTCCGCGGCGGCGTCGTTGGC 240 consensus_10526#2 GGCGGTCTTGCTCCTCGTTCTTGCTGTCGCGGCGGCGTCTTCCGCGGCGGCGTCGTTGGC 144 consensus_10526#0 GGCGGTCTTGCTCCTCGTTCTTGCTGTCGCGGCGGCGTCTTCCGCGGCGGCGTCGTTNGC 173 ********************************************************* ** consensus_10526#1 TGGCGGCGGCGACCGCCACCTGCAGCTGGGGATGCTGTCCACCGGCGGCGAGTGCCGGGG 300 consensus_10526#2 TGGCGGCGGCGACCGCCACCTGCAGCTGGGGATGCTGTCCACCGGCGGCGAGTGCCGGGG 204 consensus_10526#0 TGGCGGCGGCGACCGC-ACCTGCAGCTGGGGATGCTGTCCACCGGCGGCGAGTNTCGGGG 232 **************** ************************************ ***** consensus_10526#1 -CACGGTGGGGGAGTGCCTTGAGGGGGGAGACGTCGACGGCGA---GGAGGGGGAGCTCG 356 consensus_10526#2 -CACGGTGGGGGAGTGCCTTGAGGGGGGAGACGTCGACGGCGA---GGAGGGGGAGCTCG 260 consensus_10526#0 GCACGGTGGGGGACTGCCTTGAAGGGGGAGACGTCGACGGCGTTATGATGAGCTATCTTT 292 ************ ******** ******************* * * * * ** consensus_10526#1 GGTCGGC-GTCCGGCGAGGCGCACCGCCGCGTGCTCGCCGGGAGAGGGTACATCAGCT-A 414 consensus_10526#2 GGTCGGC-GTCCGGCGAGGCGCACCGCCGCGTGCTCGCCGGGAGAGGGTACATCAGCT-A 318 consensus_10526#0 CTTCCTCTGCCTCGTGATTCTCACTCTTTAACTTCTTCTTGCTACGGCTACCTTATTTCA 352 ** * * * * ** * *** * * ** *** * * * * consensus_10526#1 CCAGTCGCTGCGCCGCGACAGCGTGCCGTG-------CTCTCGCCGCGGCGCCAGCTACT 467 consensus_10526#2 CCAGTCGCTGCGCCGCGACAGCGTGCCGTG-------CTCTCGCCGCGGTGCCAGCTACT 371 consensus_10526#0 CTTTTTTCTTCCTTTTGACATCTTTCCTTGTCATTTTCTCTTACCTCAGCATT-GTCATT 411 * * ** * **** * * ** ** **** ** * * * * * consensus_10526#1 ACAA-CTGTCGCCCCGGCGCCTCCGCCAACCCCTACCACCGCGGCTGCTCCCGCATCACC 526 consensus_10526#2 ACAA-CTGTTGTCCCGGCGCCTTCGTCAACCCCTACCACCGTGGTTGCTTCCCTATCACC 430 consensus_10526#0 ATATTCTCTTACTCAATCTCAACCTCCAATTTACGTTTCTCGATTTCGATTTACACTTCT 471 * * ** * * * * * *** * * * * consensus_10526#1 CGCTGCCGCGGCTGATCTCCTCCTCCTCCTCCTCCTCCTCCTG-----CGCCGCCGCCGC 581 consensus_10526#2 CGTTGCCGCGGCTGATCTCCTTCTACTCCTTCTAA-----CTT-----CGCCGATCTCCA 480 consensus_10526#0 AATTGTGATATTCTTTCTCTTTTCTATATTTCTATCTCGCCTTTCTATCCTCGCCGTCCT 531 ** **** * * * ** ** * ** * consensus_10526#1 TGGATCCGCCGGAGAAGATGGCATCGTCGTCGCC----AGGTTAAAATACAAAAA-AAAA 636 consensus_10526#2 TGGATCCGTCCGGAAAGATGGCATTCTCTCTTCC----CGTTTAAAATGCAAAAACAAAA 536 consensus_10526#0 ATAAGATATTTTACAGCCTACCCTTTTTATTTTTTCCACGCTTACCATTCTATCTAATAT 591 * * * * * * * *** ** * * * * consensus_10526#1 GAGAGGAAAAAACAAAATAATCG--AGCTGTTGT-TCTTGTGTTCTTGC--AGTGCCACT 691 consensus_10526#2 GAGAGGAACTAACCAAATTAACCTTATCTGTTGTCTTTTGTGTTTTTGC--ACTGCCACT 594 consensus_10526#0 CAATTATCTCTTTCACTCTTATTGTATATCTCGCACTTTCTGCTCTGGCTTATATCCATC 651 * * * * * * ** ** * * ** * *** consensus_10526#1 ACTCCTA--CCTCTACTATTTATTACTATTAGCTAC-TACTATTAATTAATATATTCCTT 748 consensus_10526#2 ACCTCCGACCCTCTACATTTCATTACTTTGAGCTCCCTTTTCTTAATAAAACAATTTCTT 654 consensus_10526#0 TTCTCTAG-CTTCTGTTTTTC-TCTCTATCTGCTATCCTTCAATTCTTTTTTTACTTGTT 709 * * *** ** * ** * *** * * * * ** consensus_10526#1 TG-TTTGATTTGCTGCTGCTAATGATGC-TGCTGTTGTATT-TGGGATCTTATTGTTTGT 805 consensus_10526#2 TGCTCTGATCTGCATCCGCTTAAGATGCCTCCTCTTGTNTC------------------- 695 consensus_10526#0 GATCCTTTTTTATCGGCATACTGCGTGCGTAATGTAAACTTGTATGATATTTTCACTCTC 769 * * * *** * * * * consensus_10526#1 GCTTTGTAAAGTAAGAGAGATTTGTGCCCCACTATGGCTGGCTTAATTATCAAGAGATAT 865 consensus_10526#2 ------------------------------------------------------------ consensus_10526#0 TTAATCTAGCATCTCATTTATCTGTTTTTCGTTCGTCCTGTCTTTCCACCATACATTTAT 829 consensus_10526#1 ATATTCTTTCTTAT---------------------------------------------- 879 consensus_10526#2 ------------------------------------------------------------ consensus_10526#0 ATACTCTACTCCATTTATCTGTGCTCCACCTTCGTCTTCCTTCCTGAAACTTTCTAGTTT 889 consensus_10526#1 ---------------------------------------------- consensus_10526#2 ---------------------------------------------- consensus_10526#0 CTTCCCGTCTGTCTAATATGATTATTCTAACTCCTGATGCACTGCG 935 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||