These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10542#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1167 fasta sequence [CCCTAACCCGCGATCCGCCTCCGCCGCCGCCACCACCACCACCCACCCGGATCCCCACCTCCCTCCCCGATCTCACCACCTCCGTATAAAGGCGGCTCGGTTTGAAAAATCTTTGCCTCCGGAGGAGGAGGGGGGGATGGCTGCCGCGGCGGTGGATCCGATGGCGCTGGGGCTGGGGACGAGCGGAGGAGGAGGAGGAGGCGAGTCGGCGGTGGGGGGTGATGGGGCGGAGCCGGTG-GATCTCGTCGAGCACCCCTCCGGGATCGTCCCCACCCTCCAGAACATTGTTTCGACAGTAAATCTGGACTGCAGGTTGGATCTGAAAAAAATCGCTCTACAGGCTCGTAATGCAGAGTACAACCCAAAGCGTTTTGCTGCAGTTATCATGAGGATAAGGGACCCAAAGACAACAGCCCTGATATTTGCTTCGGGAAAGATGGTTTGCACTGGAGCAAAGAGCGAAGACCATTCAAAGCTTGCTGCGAGGAAGTATGCGCGAATCGTCCAAAAGCTTGGCTTCCCAGCAAAGTTCAAGGATTTCAAGATCCAGAACATTGTTGGTTCATGTGATGTCAAATTTCCTATTCGCCTGGAGGGCCATGCTTATTCTCATGGCGCATTCTCTAGTTATGAGCCAGAGCTCTTCCCTGGGCTGATTTACCGGATGAAGCAGCCAAAGATTGTGCTTCTCATTTTTGTCTCTGGCAAGATTGTTCTCACTGGAGCTAAGTACCGCAAAGAGATTTACGCTGCCTTTGAGAACATGTTCCCGGTGCTCACTGAATACAGGAAAACTCAGCAGCGCTGAGGGAATGATTTGTCGACAGAATGGGGAGTTCGCTGCCGCTGTACATACCATCTTAAGGACCTGGCTGCCAAGATTTTGAGACATGCACCTGGCGTCATTCCTTTTTCTTTCCTTTGTTCTTCGTAGCAGTAGGGTAGGAGAGCAACTGCGTAAAGGAGAGTATGTAAACAAGTTGATCAAAGTATTCTTTTGATAAACTAATGCTGACATGCAAGAAATGCATCCTGACTTGAGATCATGTGTTGTGTGCCTGCGTTCTGAATTGTAAAGTACAGTTTGATTGTGAGAGAAGTGGTACTCCATACGAAGTATGGAAAATATCACATTCTTCTCTCTCCATGCAAAGCAAGATTCAGCTA] [+] EMBL AK108240 [CCCTAACCCGCGATCCGCCTCCGCCGCCGCCACCACCACCACCCACCCGGATCCCCACCTCCCTCCCCGATCTCACCACCTCCGTATAAAGGCGGCTCGGTTTGAAAAATCTTTGCCTCCGGAGGAGGAGGGGGGGATGGCTGCCGCGGCGGTGGATCCGATGGCGCTGGGGCTGGGGACGAGCGGAGGAGGAGGAGGAGGCGAGTCGGCGGTGGGGGGTGATGGGGCGGAGCCGGTG GATCTCGTCGAGCACCCCTCCGGGATCGTCCCCACCCTCCAGAACATTGTTTCGACAGTAAATCTGGACTGCAGGTTGGATCTGAAAAAAATCGCTCTACAGGCTCGTAATGCAGAGTACAACCCAAAGCGTTTTGCTGCAGTTATCATGAGGATAAGGGACCCAAAGACAACAGCCCTGATATTTGCTTCGGGAAAGATGGTTTGCACTGGAGCAAAGAGCGAAGACCATTCAAAGCTTGCTGCGAGGAAGTATGCGCGAATCGTCCAAAAGCTTGGCTTCCCAGCAAAGTTCAAGGATTTCAAGATCCAGAACATTGTTGGTTCATGTGATGTCAAATTTCCTATTCGCCTGGAGGGCCATGCTTATTCTCATGGCGCATTCTCTAGTTATGAGCCAGAGCTCTTCCCTGGGCTGATTTACCGGATGAAGCAGCCAAAGATTGTGCTTCTCATTTTTGTCTCTGGCAAGATTGTTCTCACTGGAGCTAAGTACCGCAAAGAGATTTACGCTGCCTTTGAGAACATGTTCCCGGTGCTCACTGAATACAGGAAAACTCAGCAGCGCTGAGGGAATGATTTGTCGACAGAATGGGGAGTTCGCTGCCGCTGTACATACCATCTTAAGGACCTGGCTGCCAAGATTTTGAGACATGCACCTGGCGTCATTCCTTTTTCTTTCCTTTGTTCTTCGTAGCAGTAGGGTAGGAGAGCAACTGCGTAAAGGAGAGTATGTAAACAAGTTGATCAAAGTATTCTTTTGATAAACTAATGCTGACATGCAAGAAATGCATCCTGACTTGAGATCATGTGTTGTGTGCCTGCGTTCTGAATTGTAAAGTACAGTTTGATTGTGAGAGAAGTGGTACTCCATACGAAGTATGGAAAATATCACATTCTTCTCTCTCCATGCAAAGCAAGATTCAGCTA] [+] EMBL C28467 [ CGATCCNNCTCCGCCGCCGCCACCACCACCACCCACCCGGATCCCCACCTCCCTCCCCGATCTCACCACNTCCGTATAAAGGCGGCTCGGTTTGAAAAATCTTTGCCTCCGGAGGANGNGNGGGGGATGGCTGCCGCGGCGGTGGATCCGATGGCGCTGGGGCTGGGGACGAGCGGAGGAGGAGGAGGAGGCGAGTCGGCGGTGGGGGGTGATGGGGCGG CGGTGNGATCTCGTCGAGCACCCCTCC GGATCGTCCCCACCCTCCAGAACATTGTTTCGACAGTAAATCTGGACTNCAGGTTGGATCTGAAAAAAATCGCTCTACAGGCTCGTAATNCAGAGTACAA CCAAAGCGTTTTNCTTCAGTTATCATGAGGATAAGGGACCAAA ] [+] EMBL C28655 [ CCAAAGACAACAGCCCTGATATTTGCTTCGGGAAANATGGTTTGCACTGGAGCAAAGAGCGAAGACCATTCAAAGCTTGCTGCGAGGAAGTATGCGCGAATCGTCCAAAAGCTTGGCTTCCCAGCAAAGTTCAAGGATTTCAAGATCCAGAACATTGTTGGTTCATGTGATGTCAAATTTCCTATTCGCCTGGAGGGCCTTGCTTATTCTCATGGCGCATTCTCTAGTTATGAGCCAGAGCTCTTCCCTGGGCTGATTTACCGGATGANGCAGCCAAAGATTGTGCTTCTNATTTTTGTCTCTGGCAAGATTGTTCTCACTGGAGCTAAGTACCGCAAAGAGATTTACGCTGCCTTTGAGAACATGTTCCCGGTGCTCACTGAATACAGG AAACTCAGCAGCGTTG GGGGATGATTTNTCG CAGAATG ] consensusID : consensus_10542#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 682 fasta sequence [CATTCCAAAGCCTTGTTGCAAGAAAGGNAGAAATTGTTCACTTGTCCCTATTTTCGGGCTTTTGCTGAATTGCTCTATACCAATTTTTATCTGATTATTTGTTAGCNCAGTATGCGCGAATCGTCCAAAAGCTTGGCTTCCCAGCAAAGTTCAAGGATTTCAAGATCCAGAACATTGTTGGTTCATGTGATGTCAAATTTCCTATTCGCCTGGAGGGCCTTGCTTATTCTCATGGCGCATTCTCTAGTTATGAGCCAGAGCTCTTCCCTGGGCTGATTTACCGGATGAAGCAGCCAAAGATTGTGCTTCTCATTTTTGTCTCTGGCAAGATTGTTCTCACTGGAGCTAAGTACCGCAAAGAGATTTACGCTGCCTTTGAGAACATGTTCCCGGTGCTCACTGAATACAGGAAAACTCAGCAGCGCTGAGGGAATGATTTGTCGACAGAATGGGGAGTTCGCTGCCGCTGTACATACCATCTTAAGGACCTG-GCT-GCCAAGATTTTGAGACATGCACCTGGCGTCATTCCTTTTTCTTTCCTTTGTTCTTCGTAGCAGTAGGGTAGGAGAGCAACTGCGTAAAGGAGAGTATGTAAACAAGTTGATCAAAGTATTCTTTTGATAAACTAATGCTGACATG--CAAGAAATGCATCCTGACTTGAGATCAAAAAAAAAAAAAAAAA] [+] EMBL AU091604 [CATTCCAAAGCCTTGTTGCAAGAAAGGNAGAAATTGTTCACTTGTCCCTATTTTCGGGCTTTTGCTGAATTGCTCTATACCAATTTTTATCTGATTATTTGTTAGCNCAGTATGCGCGAATCGTCCAAAAGCTTGGCTTCCCAGCAAAGTTCAAGGATTTCAAGATCCAGAACATTGTTGGTTCATGTGATGTCAAATTTCCTATTCGCCTGGAGGGCCTTGCTTATTCTCATGGCGCATTCTCTAGTTATGAGCCAGAGCTCTTCCCTGGGCTGATTTACCGGATGAAGCAGCCAAAGATTGTGCTTCTCATTTTTGTCTCTGGCAAGATTGTTCTCACTGGAGCTAAGTACCGCAAAGAGATTTACGCTGCCTTTGAGAACATGTTCCCGGTGCTCACTGAATACAGGAAAACTCAGCAGCGCTGAGGGAATGATTTGTCGACAGAATGGGGAGTTCGCTGCCGCTGTACATACCATCTTAAGGACCTG GCT GCCAAGATTTTGAGACATGCACCTGGCGTCATTCCTTTTTCTTTCCTTTGTTCTTCGTAGCAGTAGGGTAGGAGAGCAACTGCGTAAAGGAGAGTATGTAAACAAGTTGATCAAAGTATTCTTTTGATAAACTAATGCTGACATG CAAGAAATGCATCCTGACTTGAGATCAAAAAAAAAAAAAAAAA] [+] EMBL AU161367 [ TGCTTCTCATTTTTGTCTCTGGCAAGATTGTTCTCACTGGAGNTAAGTACCGCAAAGAGATTTACGCTGCCTTTGAGAACATGTTCCCGGTGCTCACTGAATACAGGAAAACTCAGCAGCGCTGAGGGAATGATTTGTCGACAGAATGGGGAGTTCGCTGCCGCTGTACATACCATCTTAAGGACCTG GCT GCCAAGATTTTGAGACATGCACCTGGCGTCATTCCTTTTTCTTTCCTTTGTTCTTCGTAGCAGTAGGGTAGGAGAGCAACTGCGTAAAGGAGAGTATGTAAACAAGTTGATCAAAGTATTCTTTTGATAAACTAATGCTGACATG CAAGAAATGCATCCTGACTTGAGATCAAAAAA ] [+] EMBL BM038289 [ ATTTAC CT CCTTTGAGAACATGTTCCCGGTGCTCACTGAATACAGGAAAACTCAGCAGCGCTGAGGGAATGATTTGTCGACTGAATGGGGAGTTCGCT CCGCTGTACATACCATCTTAAGGACCTGCCCTCGCCCAGATTTTGAGACATGCACCTGGCGTCATTCCTTTTTCTTTCCTTTGTTCTTCGTA CAGTAGGGTAGGAGAGCAACTGCGTAAAGGAGAGTATGTAAACAAGTTGATC AAGTATTCTTTTGATAAACTAATGCTGACATGCCCACCCACCGCATCCTGACTTGAGATCAAAAAAA ] consensusID : consensus_10542#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 568 fasta sequence [CCCTAACCCGCGATCCGCCTCCGCCGCCGCCACCACCACCACCCACCCGGATCCCCACCTCCCTCCCCGATCTCACCACCTCCGTATAAAGGCGGCTCGGTTTGAAAAATCTTTGCCTCCGGAGGAGGAGGGGGGGATGGCTGCCGCGGCGGTGGATCCGATGGCGCTGGGGCTGGGGACGAGCGGAGGAGGAGGAGGAGGCGAGTCGGCGGTGGGGGGTGATGGGGCGGAGCCGGTGGATCTCGTCGAGCACCCCTCCGGGATCGTCCCCACCCTCCAGTGAGTCCCCCCCGCCACCCCCGCGTCGCAGGCTTGACGAGAACGATGGGGGTTGTTCTTGGATGATCTGGATCTGGGATATCTGAATGTGGGATGTGAACTTGACGGGGCTTGTGGATCTTGATGGGTTTGGGGTGGTGGTGGTGGTGGGGAGTAACAGCTAAACTTGACGGGGATTTTGTAGATCTGGACTTGCACGGGTTAGGGTTGGGGGAAACCTGCGGGTTCTTGATCTGATACGATCTTGCATTGGTTTGGAGGAGTGCGAGTTTATCTGATGTGGAGGCCG] [+] EMBL AK111369 [CCCTAACCCGCGATCCGCCTCCGCCGCCGCCACCACCACCACCCACCCGGATCCCCACCTCCCTCCCCGATCTCACCACCTCCGTATAAAGGCGGCTCGGTTTGAAAAATCTTTGCCTCCGGAGGAGGAGGGGGGGATGGCTGCCGCGGCGGTGGATCCGATGGCGCTGGGGCTGGGGACGAGCGGAGGAGGAGGAGGAGGCGAGTCGGCGGTGGGGGGTGATGGGGCGGAGCCGGTGGATCTCGTCGAGCACCCCTCCGGGATCGTCCCCACCCTCCAGTGAGTCCCCCCCGCCACCCCCGCGTCGCAGGCTTGACGAGAACGATGGGGGTTGTTCTTGGATGATCTGGATCTGGGATATCTGAATGTGGGATGTGAACTTGACGGGGCTTGTGGATCTTGATGGGTTTGGGGTGGTGGTGGTGGTGGGGAGTAACAGCTAAACTTGACGGGGATTTTGTAGATCTGGACTTGCACGGGTTAGGGTTGGGGGAAACCTGCGGGTTCTTGATCTGATACGATCTTGCATTGGTTTGGAGGAGTGCGAGTTTATCTGATGTGGAGGCCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10542#0 CCCTAACCCGCGATCCGCCTCCGCCGCCGCCACCACCACCACCCACCCGGATCCCCACCT 60 consensus_10542#1 ------------------------------------------------------------ consensus_10542#2 ------------------------------------------------------------ consensus_10542#0 CCCTCCCCGATCTCACCACCTCCGTATAAAGGCGGCTCGGTTTGAAAAATCTTTGCCTCC 120 consensus_10542#1 ------------------------------------------------------------ consensus_10542#2 ------------------------------------------------------------ consensus_10542#0 GGAGGAGGAGGGGGGGATGGCTGCCGCGGCGGTGGATCCGATGGCGCTGGGGCTGGGGAC 180 consensus_10542#1 ------------------------------------------------------------ consensus_10542#2 ------------------------------------------------------------ consensus_10542#0 GAGCGGAGGAGGAGGAGGAGGCGAGTCGGCGGTGGGGGGTGATGGGGCGGAGCCGGTGGA 240 consensus_10542#1 ------------------------------------------------------------ consensus_10542#2 ------------------------------------------------------------ consensus_10542#0 TCTCGTCGAGCACCCCTCCGGGATCGTCCCCACCCTCCAGAACATTGTTTCGACAGTAAA 300 consensus_10542#1 ------------------------------------------------------------ consensus_10542#2 ------------------------------------------------------------ consensus_10542#0 TCTGGACTGCAGGTTGGATCTGAAAAAAATCGCTCTACAGGCTCGTAATGCAGAGTACAA 360 consensus_10542#1 ---------------------------------------------------------CAT 3 consensus_10542#2 ------------------------------------------------------------ consensus_10542#0 CCCAAAGCGTTTTGCTGCAGTTATCATGAGGATAAGGGACCCAAAGACAACAGCCCTGAT 420 consensus_10542#1 TCCAAAGC--CTTGTTGCAA-------GAAAGGNAGAAATT---GTTCACTTGTCCCTAT 51 consensus_10542#2 ------------------------------------------------------------ consensus_10542#0 ATTTG--CTTCGGGAAAGATGGTTTGCACTGGAGCAAAGAGCGAAGACCATTCAAAGCTT 478 consensus_10542#1 TTTCGGGCTTTTGCTGAATTGCTCTATAC------------CAATTTTTATCTGATTATT 99 consensus_10542#2 ---------------------------------------------CCCTAACCCGCGATC 15 * * consensus_10542#0 GCTGCGAGGAAGTATGCGCGAATCGTCCAAAAGCTTGGCTTCCCAGCAAAGTTCAAGGAT 538 consensus_10542#1 TGT-TAGCNCAGTATGCGCGAATCGTCCAAAAGCTTGGCTTCCCAGCAAAGTTCAAGGAT 158 consensus_10542#2 CGC-CTCCGCCGCCGCCACCA--CCACCACCCACCCGGATCCCCACCTCC-CTCCCCGAT 71 * * * * * *** * ** * **** * ** *** consensus_10542#0 TTCAAGATC-CAGAACATTGTTGGTTCATGTGATGTCAAATTTCCTATTCGCCTGGAGGG 597 consensus_10542#1 TTCAAGATC-CAGAACATTGTTGGTTCATGTGATGTCAAATTTCCTATTCGCCTGGAGGG 217 consensus_10542#2 CTCACCACCTCCGTATAAAGGCGGCTCGGTTTGAAAAATCTTTGCCTCCGGAGGAGGAGG 131 *** * * * * * * * ** ** * * *** * * * ** consensus_10542#0 CCATGCTTATTCTCATGGCGCATTCTCTAGTTATGAGCCAGAGCTCTTCCCTGGGCTGAT 657 consensus_10542#1 CCTTGCTTATTCTCATGGCGCATTCTCTAGTTATGAGCCAGAGCTCTTCCCTGGGCTGAT 277 consensus_10542#2 GGGGGATGGCTGCCGCGGCGGTGGATCCGATGGC--GCTGGGGCTGGGGAC-GAGCGGAG 188 * * * * **** ** * ** * *** * * ** ** consensus_10542#0 TTACCGGATGAAGC-AGCCAAAGATTGTGCTTCTCATTTTTGTCTCTGGCAAGATTGTTC 716 consensus_10542#1 TTACCGGATGAAGC-AGCCAAAGATTGTGCTTCTCATTTTTGTCTCTGGCAAGATTGTTC 336 consensus_10542#2 GAGGAGGAGGAGGCGAGTCGGCGGTGGGG------GGTGATGGGGCGGAGCCGGTGGATC 242 *** ** ** ** * * * * * * ** * * * * * ** consensus_10542#0 TCACTGGAGCTAAGTACCGCAAAGAGATTTACGCTGCCTTTGAGAACATGTTCCCGGTGC 776 consensus_10542#1 TCACTGGAGCTAAGTACCGCAAAGAGATTTACGCTGCCTTTGAGAACATGTTCCCGGTGC 396 consensus_10542#2 TCGTCG------AGCACCCCTCCGGGATCGTCCCCACCCTCCAG--TGAGTCCCCCCCGC 294 ** * ** *** * * *** * * ** * ** ** *** ** consensus_10542#0 TCACTGAATACAGGAAAACTCAGCAGCGCTGAGGGAATGATTTGTCGACAGAATGGGGAG 836 consensus_10542#1 TCACTGAATACAGGAAAACTCAGCAGCGCTGAGGGAATGATTTGTCGACAGAATGGGGAG 456 consensus_10542#2 CACCCCCGCGTCGCAGGCTTGACGAGAACGATGGGGGTTGTTCTTGGATGATCTGGA--- 351 * * * * * ** * *** * ** * ** *** consensus_10542#0 TTCGCTGCCGCTGTACATACCATCTTAAG--GACCTGGCTGCCAAGATTTTGA--GACAT 892 consensus_10542#1 TTCGCTGCCGCTGTACATACCATCTTAAG--GACCTGGCTGCCAAGATTTTGA--GACAT 512 consensus_10542#2 TCTGGGATATCTGAATGTGGGATGTGAACTTGACGGGGCTTGTG-GATCTTGATGGGTTT 410 * * *** * * ** * ** *** **** *** **** * * consensus_10542#0 GCACCTGGCGTCATTCCTTTTTCTTTCCTTTGTTCTTCGTAGCAGTAGGGTAGGAGAGCA 952 consensus_10542#1 GCACCTGGCGTCATTCCTTTTTCTTTCCTTTGTTCTTCGTAGCAGTAGGGTAGGAGAGCA 572 consensus_10542#2 GGGGTGGTGGTGGTGGTGGGGAGTAACAGCTAAACTTGACGGGGATTTTGTAGATCTGGA 470 * * ** * * * * *** * * **** * * consensus_10542#0 ACTGCGTAAAGGAGAGTATGTAAACAAGTTGATCAAAGTATTCTTTTGATA--AACTAAT 1010 consensus_10542#1 ACTGCGTAAAGGAGAGTATGTAAACAAGTTGATCAAAGTATTCTTTTGATA--AACTAAT 630 consensus_10542#2 CTTGCACGGGTTAGGGT-TGGGGGAAACCTG--CGGGTTCTTGATCTGATACGATCTTGC 527 *** ** ** ** ** ** * * ** * ***** * ** consensus_10542#0 GCTGACATGCAAGAAATGCATCCTGACTTGAGATCATGTGTTGTGTGCCTGCGTTCTGAA 1070 consensus_10542#1 GCTGACATGCAAGAAATGCATCCTGACTTGAGATCAAAAAAAAAAAAAAAAA-------- 682 consensus_10542#2 ATTGGTTTG-GAGGAGTGCGAGTTTATCTGATGTGGAGGCCG------------------ 568 ** ** ** * *** * * *** * consensus_10542#0 TTGTAAAGTACAGTTTGATTGTGAGAGAAGTGGTACTCCATACGAAGTATGGAAAATATC 1130 consensus_10542#1 ------------------------------------------------------------ consensus_10542#2 ------------------------------------------------------------ consensus_10542#0 ACATTCTTCTCTCTCCATGCAAAGCAAGATTCAGCTA 1167 consensus_10542#1 ------------------------------------- consensus_10542#2 ------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||