These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10559#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 657 fasta sequence [AAAAAAAAAAAAAGAGAACAAAACCCTAGAATTGGGGGAAGGGTTCATCAGGTCTTCTTCTCTTCTGGAGGCGCGCTGCTCTTCGCGGCATCTCAATTCCCACCGCCGCATCGCGAGATCTCCGGCCTTTTCTCCTTCCGGTTGAGGAGCAAAGAGCAGCAATTATGGCGGCGAAACCCGAGCCGACCCAGTTGGAGAAGGAGCAGATGTTCGGGATGATGGAGAAGGAGATGGAGTACCGGGTCGATCTTTTCAACCGACTTACACAGACTTGTTTTGACAAGTGCATTGAGAAAAGGTATAAAGAAGCTGAGCTCAATATGGGTGAGAACAGTTGCATTGATCGATGTGTTTCGAAGTACTGGCAGGTAACTAATATGGTAGGTCAGATGCTCGGTAACCGGCCTCAGATGTGAGGCGAGAAGCAGTAGAAGCATTAGGCCAGACCATTGTCGCTATGTTTCTCCACATTGGTTTTAGAATGTTACCGATTGCCAGAAGTACACAGCACGAGTGAGTGTGACCGACTAATGGATTGCCCGAAAAGAAATTGCAATGTTCCTTTCCAATGGTGTACCTTCTCCCTGAATCATGAACAGGCCACATGCCTATAATAATTTGGTACAGCTAGACGACGATTTTTGCTGCGAAAAAAAA] [+] EMBL AK059163 [AAAAAAAAAAAAAGAGAACAAAACCCTAGAATTGGGGGAAGGGTTCATCAGGTCTTCTTCTCTTCTGGAGGCGCGCTGCTCTTCGCGGCATCTCAATTCCCACCGCCGCATCGCGAGATCTCCGGCCTTTTCTCCTTCCGGTTGAGGAGCAAAGAGCAGCAATTATGGCGGCGAAACCCGAGCCGACCCAGTTGGAGAAGGAGCAGATGTTCGGGATGATGGAGAAGGAGATGGAGTACCGGGTCGATCTTTTCAACCGACTTACACAGACTTGTTTTGACAAGTGCATTGAGAAAAGGTATAAAGAAGCTGAGCTCAATATGGGTGAGAACAGTTGCATTGATCGATGTGTTTCGAAGTACTGGCAGGTAACTAATATGGTAGGTCAGATGCTCGGTAACCGGCCTCAGATGTGAGGCGAGAAGCAGTAGAAGCATTAGGCCAGACCATTGTCGCTATGTTTCTCCACATTGGTTTTAGAATGTTACCGATTGCCAGAAGTACACAGCACGAGTGAGTGTGACCGACTAATGGATTGCCCGAAAAGAAATTGCAATGTTCCTTTCCAATGGTGTACCTTCTCCCTGAATCATGAACAGGCCACATGCCTATAATAATT ] [+] EMBL CF328301 [ GAGGCGCGCTGCTCTTCGCGGCATCTCAATTCCCACCGCCGCATCGCGAGATCTCCGGCCTTTTCTCCTTCCGGTTGAGGAGCAAAGAGCAGCAATTATGGCGGCGAAACCCGAGCCGACCCAGTTGGAGAAGGAGCAGATGTTCGGGATGATGGAGAAGGAGATGGAGTACCGGGTCGATCTTTTCAACCGACTTACACAGACTTGTTTTGACAAGTGCATTGAGAAAAGGTATAAAGAAGCTGAGCTCAATATGGGTGAGAACAGTTGCGTTGATCGATGTGTTTCGAAGTACTGGCAGGTAACTAATATGGTAGGTCAGATGCTCGGTAACCGGCCTCAGATGTGAGGCGAGAAGCAGTAGAAGCATTAGGCCAGACCATTGTCGCTATGTTTCTCCACATTGGTTTTAGAATGTTACCGATTGCCAGAAGTACACAGCACGAGTGAGTGTGACCGACTAATGGATTGCCCGAAAAGAAATTGCAATGTTCCTTTCCAATGGTGTACCTTCTCCCTGAATCATGAACAGGCCACATGCCTATAATAATTTGGTACAGCTAGACGACGAT ] [+] EMBL CF313807 [ TGATGGAGAAGGAGATGGAGTACCGGGTCGATCTTTTCAACCGACTT ] [+] EMBL CB678874 [ TGACACCTGCATTGAGAAAAGGTATAAAGAAGCTGAGCTCAATATGGGTGAGAACAGTTGCATTGATCGATGTGTTTCGAAGTACTGGCAGGTAACTAATATGGTAGGTCAGATGCTCGGTAACCGGCCTCAGATGTGAGGCGAGAAGCAGTAGAAGCATTAGGCCAGACCATTGTCGCTATGTTTCTCCACATTGGTTTTAGAATGTTACCGATTGCCAGAAGTACACAGCACGAGTGAGTGTGACCGACTAATGGATTGCCCGAAAAGAAATTGCAATGTTCCTTTCCAATGGTGTACCTTCTCCCTGAATCATGAACAGGCCACATGCCTATAATAATTTGGTACAGCTAGACGACGAT ] [-] EMBL CF328302 [ AAGCATTAGGCCAGACCATTGTCGCTATGTTTCTCCACATTGGTTTTAGAATGTTACCGATTGCCAGAAGTACACAGCACGAGTGAGTGTGACCGACTAATGGATTGCCCGAAAAGAAATTGCAATGTTCCTTTCCAATGGTGTACCTTCTCCCTGAATCATGAACAGGCCACATGCCTATAATAATTTGGTACAGCTAGACGACGATTTTTGCTGCGAAAAAAAA] consensusID : consensus_10559#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 241 fasta sequence [CCTGGACTGAAGGAGTAGAAGCATTATGCCAGACCATTGTCGCTATGTTTCTCC-CATTGGTTTTAGAGTGTTACCGATTGCCAGAAGTACACAGCACGAGTGAGTGTGACCGACTAATGGATTGCCCGAAAAGAAATTGCAATGTTCCTTTCCAATGGTGTACCTTCTCCCTGAATCATGAACAGGCCACATGCCTATAATAATTTGGTACAGCTAAAAAAAAAAAAAAAAAAAACACTGT] [+] EMBL CF301546 [CCTGGACTGAAGGAGTAGAAGCATTATGCCAGACCATTGTCGCTATGTTTCTCC CATTGGTTTTAGAGTGTTACCGATTGCCAGAAGTACACAGCACGAGTGAGTGTGACCGACTAATGGATTGCCCGAAAAGAAATTGCAATGTTCCTTTCCAATGGTGTACCTTCTCCCTGAATCATGAACAGGCCACATGCCTATAATAATTTGGTACAGCTAAAAAAA ] [-] EMBL CF301545 [ CTGGACTGAAGGAGTAGAAGCATTAGGCCAGACCATTGTCGCTATGTTTCTCCACATTGGTTTTAGAGTGTTACCGATTGCCAGAAGTACACAGCACGAGTGAGTGTGACCGACTAATGGATTGCCCGAAAAGAAATTGCAATGTTCCTTTCCAATGGTGTACCTTCTCCCTGAATCATGAACAGGCCACATGCCTATAATAATTTGGTACAGCTAAAAAAAAAAAAAAAAAAAACACTGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10559#0 AAAAAAAAAAAAAGAGAACAAAACCCTAGAATTGGGGGAAGGGTTCATCAGGTCTTCTTC 60 consensus_10559#1 ------------------------------------------------------------ consensus_10559#0 TCTTCTGGAGGCGCGCTGCTCTTCGCGGCATCTCAATTCCCACCGCCGCATCGCGAGATC 120 consensus_10559#1 ------------------------------------------------------------ consensus_10559#0 TCCGGCCTTTTCTCCTTCCGGTTGAGGAGCAAAGAGCAGCAATTATGGCGGCGAAACCCG 180 consensus_10559#1 ------------------------------------------------------------ consensus_10559#0 AGCCGACCCAGTTGGAGAAGGAGCAGATGTTCGGGATGATGGAGAAGGAGATGGAGTACC 240 consensus_10559#1 ------------------------------------------------------------ consensus_10559#0 GGGTCGATCTTTTCAACCGACTTACACAGACTTGTTTTGACAAGTGCATTGAGAAAAGGT 300 consensus_10559#1 ------------------------------------------------------------ consensus_10559#0 ATAAAGAAGCTGAGCTCAATATGGGTGAGAACAGTTGCATTGATCGATGTGTTTCGAAGT 360 consensus_10559#1 ------------------------------------------------------------ consensus_10559#0 ACTGGCAGGTAACTAATATGGTAGGTCAGATGCTCGGTAACCGGCCTCAGATGTGAGGCG 420 consensus_10559#1 -----------------------------------------------------CCTGGAC 7 ** consensus_10559#0 AGAAGCAGTAGAAGCATTAGGCCAGACCATTGTCGCTATGTTTCTCCACATTGGTTTTAG 480 consensus_10559#1 TGAAGGAGTAGAAGCATTATGCCAGACCATTGTCGCTATGTTTCTCC-CATTGGTTTTAG 66 **** ************* *************************** ************ consensus_10559#0 AATGTTACCGATTGCCAGAAGTACACAGCACGAGTGAGTGTGACCGACTAATGGATTGCC 540 consensus_10559#1 AGTGTTACCGATTGCCAGAAGTACACAGCACGAGTGAGTGTGACCGACTAATGGATTGCC 126 * ********************************************************** consensus_10559#0 CGAAAAGAAATTGCAATGTTCCTTTCCAATGGTGTACCTTCTCCCTGAATCATGAACAGG 600 consensus_10559#1 CGAAAAGAAATTGCAATGTTCCTTTCCAATGGTGTACCTTCTCCCTGAATCATGAACAGG 186 ************************************************************ consensus_10559#0 CCACATGCCTATAATAATTTGGTACAGCTAGACGACGATTTTTGCTGCGAAAAAAAA--- 657 consensus_10559#1 CCACATGCCTATAATAATTTGGTACAGCTAAAAAAAAA--------AAAAAAAAAAACAC 238 ****************************** * * * ******** consensus_10559#0 --- consensus_10559#1 TGT 241 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||