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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10570#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1169 fasta sequence
[AATCCAAATCCCTCCCCCTTTTTNTTCTNACCCTCACCACCTCATCCTCCACCACCACCATTCCCTCTTCTTCTCCTCCTCCTTGCTTCTNCCGCCCCTTAACCCCTACTGCTCCCTCCCAGTAGCCGGTGCTAACCCTAGCTTGCTAGCTAGATTGCTCTCTCTGGTAGTAGTAGATCCGTGGAGTGGAGATCTGCCCGCGGATCGAGCGGCGGCGGCAGAGCACCAGCCGTGTCTGCGGCGCGGTGTGCGCGGGTGTTGCGGAGCGGCGGCTGAGCGGAGGTGTGGGAGGAGGGGGAGTGCTGCGGCTTCCGGGGTGTTAGATCCGCCGATCCTGGCGCCGGAGATGGATTCCTCGTCGGTCGAGAAGGTGAAGCTTCCGATCCGTGGGTTCTTGGGGGGCTCGATCTGTGGCTGGAATGGCGCCTTGGCTGGGTGGTTTTTTGACGCTCGATCTGTGGGTTGCAGGGGAGTGGGTCGATAGATCCGGACGAGCGCACGGCCTCCGGCGAGCCCAAGGCGTGCACCGACTGCCACACCACCAAGACTCCGCTCTGGCGCGGCGGCCCCTCCGGCCCCAAGGTGAGATGAGATCCGATCTGCTCCTCCTGCTCTTCCCTTTCTCGATCTGTGCATTTTTTTCGCCTGGGTTTTCGGTGGTTGATCCGCCCGATCTGTGTTTTTTTTTTTGCTTTGATCCAGTCGCTGTGCAACGCGTGCGGGATCCGGTACCGGAAGAAGAGACGGGAGGCGCTGGGGCTCGACGCCGGCGAGGGCGGCGCGGAGCGGCAGGAGAAGAAGAAGAGCAAGAGGGAGAGAGGGGAGGAGGTGACCATGGAGCTCCGCATGGTGGGGTTCGGGAAGGAGGTGGTCCTGAAGCAGCGGCGGCGGATGCGGCGGAGGAGACGCCTCGGCGAGGAGGAGAAGGCGGCCATCCTCCTCATGGCCCTCTCCTCCGGAGTCATCTACGCCTGAACCACCACCCTACCTACCTACCCACCTAGCAACAGCAAGAGAGAGAGAAGCAGAGGAAAGGAGGCAGCCATGGGAAAGAGTGATTTGCTTGCTTAACATGCATGATCTCAACCGGGAGAGACTAGACAGATCTCTACCCTTTTTTTTTCTTCTCCCCTGCTTAGTTTTTCCAGCTAATTAGTTCGATCAAAGTG]
[+] EMBL C27942 [AATCCAAATCCCTCCCCCTTTTTNTTCTNACCCTCACCACCTCATCCTCCACCACCACCATTCCCTCTTCTTCTCCTCCTCCTTGCTTCTNCCGCCCCTTAACCCCTACTGCTCCCTCCCAGTAGCCGGTGCTAACCCTAGCTTGCTAGCTAGATTGCTCTCTCTGGTAGTAGTAGATCCGTGGAGTGGAGATCTGCCCGCGGATCGAGCGGCGGCGGCAGAGCACCA ]
[+] EMBL AK064036 [ CCCTCTTCTTCTCCTCCTCCTTGCTTCTCCCGCCCCTTAACCCCTACTGCTCCCTCCCAGTAGCCGGTGCTAACCCTAGCTTGCTAGCTAGATTGCTCTCTCTGGTAGTAGTAGATCCGTGGAGTGGAGATCTGCCCGCGGATCGAGCGGCGGCGGCAGAGCACCAGCCGTGTCTGCGGCGCGGTGTGCGCGGGTGTTGCGGAGCGGCGGCTGAGCGGAGGTGTGGGAGGAGGGGGAGTGCTGCGGCTTCCGGGGTGTTAGATCCGCCGATCCTGGCGCCGGAGATGGATTCCTCGTCGGTCGAGAAGGTGAAGCTTCCGATCCGTGGGTTCTTGGGGGGCTCGATCTGTGGCTGGAATGGCGCCTTGGCTGGGTGGTTTTTTGACGCTCGATCTGTGGGTTGCAGGGGAGTGGGTCGATAGATCCGGACGAGCGCACGGCCTCCGGCGAGCCCAAGGCGTGCACCGACTGCCACACCACCAAGACTCCGCTCTGGCGCGGCGGCCCCTCCGGCCCCAAGGTGAGATGAGATCCGATCTGCTCCTCCTGCTCTTCCCTTTCTCGATCTGTGCATTTTTTTCGCCTGGGTTTTCGGTGGTTGATCCGCCCGATCTGTGTTTTTTTTTTTGCTTTGATCCAGTCGCTGTGCAACGCGTGCGGGATCCGGTACCGGAAGAAGAGACGGGAGGCGCTGGGGCTCGACGCCGGCGAGGGCGGCGCGGAGCGGCAGGAGAAGAAGAAGAGCAAGAGGGAGAGAGGGGAGGAGGTGACCATGGAGCTCCGCATGGTGGGGTTCGGGAAGGAGGTGGTCCTGAAGCAGCGGCGGCGGATGCGGCGGAGGAGACGCCTCGGCGAGGAGGAGAAGGCGGCCATCCTCCTCATGGCCCTCTCCTCCGGAGTCATCTACGCCTGAACCACCACCCTACCTACCTACCCACCTAGCAACAGCAAGAGAGAGAGAAGCAGAGGAAAGGAGGCAGCCATGGGAAAGAGTGATTTGCTTGCTTAACATGCATGATCTCAACCGGGAGAGACTAGACAGATCTCTACCCTTTTTTTTTCTTCTCCCCTGCTTAGTTTTTCCAGCTAATTAGTTCGATCAAAGTG]
consensusID : consensus_10570#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 902 fasta sequence
[CACCACCACCATTCCCTCTTCTTCTCCTCCTCCTTGCTTCTCCCGCCCCTTAACCCCTACTGCTCCCTCCCAGTAGCCGGTGCTAACCCTAGCTTGCTAGCTAGATTGCTCTCTCTGGTAGTAGTAGATCCGTGGAGTGGAGATCTGCCCGCGGATCGAGCGGCGGCGGCAGAGCACCAGCCGTGTCTGCGGCGCGGTGTGCGCGGGTGTTGCGGAGCGGCGGCTGAGCGGAGGTGTGGGAGGAGGGGGAGTGCTGCGGCTTCCGGGGTGTTAGATCCGCCGATCCTGGCGCCGGAGATGGATTCCTCGTCGGTCGAGAAGGGGAGTGGGTCGATAGATCCGGACGAGCGCACGGCCTCCGGCGAGCCCAAGGCGTGCACCGACTGCCACACCACCAAGACTCCGCTCTGGCGCGGCGGCCCCTCCGGCCCCAAGTCGCTGTGCAACGCGTGCGGGATCCGGTACCGGAAGAAGAGACGGGAGGCGCTGGGGCTCGACGCCGGCGAGGGCGGCGCGGAGCGGCAGGAGAAGAAGAAGAGCAAGAGGGAGAGAGGGGAGGAGGTGACCATGGAGCTCCGCATGGTGGGGTTCGGGAAGGAGGTGGTCCTGAAGCAGCGGCGGCGGATGCGGCGGAGGAGACGCCTCGGCGAGGAGGAGAAGGCGGCCATCCTCCTCATGGCCCTCTCCTCCGGAGTCATCTACGCCTGAACCACCACCCTACCTACCTACCCACCTAGCAACAGCAAGAGAGAGAGAAGCAGAGGAAAGGAGGCAGCCATGGGAAAGAGTGATTTGCTTGCTTAACATGCATGATCTCAACCGGGAGAGACTAGACAGATCTCTACCC-TTTTTTTTCTTCTCCCCTGCTTAGTTTTTCCAGCTAATTAGTTCGATCAAAGTGG]
[+] EMBL CB672322 [CACCACCACCATTCCCTCTTCTTCTCCTCCTCCTTGCTTCTCCCGCCCCTTAACCCCTACTGCTCCCTCCCAGTAGCCGGTGCTAACCCTAGCTTGCTAGCTAGATTGCTCTCTCTGGTAGTAGTAGATCCGTGGAGTGGAGATCTGCCCGCGGATCGAGCGGCGGCGGCAGAGCACCAGCCGTGTCTGCGGCGCGGTGTGCGCGGGTGTTGCGGAGCGGCGGCTGAGCGGAGGTGTGGGAGGAGGGGGAGTGCTGCGGCTTCCGGGGTGTTAGATCCGCCGATCCTGGCGCCGGAGATGGATTCCTCGTCGGTCGAGAAGGGGAGTGGGTCGATAGATCCGGACGAGCGCACGGCCTCCGGCGAGCCCAAGGCGTGCACCGACTGCCACACCACCAAGACTCCGCTCTGGCGCGGCGGCCCCTCCGGCCCCAAGTCGCTGTGCAACGCGTGCGGGATCCGGTACCGGAAGAAGAGACGGGAGGCGCTGGGGCTCGACGCCGGCGAGGGCGGCGCGGAGCGGCAGGAGAAGAAGAAGAGCAAGAGGGAGAGAGGGGAGGAGGTGACCATGGAGCTCCGCATGGTGGGGTTCGGGAAGGAGGTGGTCCTGAAGCAGCGGCGGCGGATGCGGCGGAGGAGACGCCTCGGCGAGGAGGAGAAGGCGGCCATCCTCCTCATGGCCCTCTCCTCCGGAGTCATCTACGCCTGAACCACCACCCTACCTACCTACCCACCTAGCAACAGCAAGAGAGAGAGAAGCAGAGGAAAGGAGGCAGCCATGGGAAAGAGTGATTTGCTTGCTT ]
[+] EMBL AK073709 [ CCATTCCCTCTTCTTCTCCTCCTCCTTGCTTCTCCCGCCCCTTAACCCCTACTGCTCCCTCCCAGTAGCCGGTGCTAACCCTAGCTTGCTAGCTAGATTGCTCTCTCTGGTAGTAGTAGATCCGTGGAGTGGAGATCTGCCCGCGGATCGAGCGGCGGCGGCAGAGCACCAGCCGTGTCTGCGGCGCGGTGTGCGCGGGTGTTGCGGAGCGGCGGCTGAGCGGAGGTGTGGGAGGAGGGGGAGTGCTGCGGCTTCCGGGGTGTTAGATCCGCCGATCCTGGCGCCGGAGATGGATTCCTCGTCGGTCGAGAAGGGGAGTGGGTCGATAGATCCGGACGAGCGCACGGCCTCCGGCGAGCCCAAGGCGTGCACCGACTGCCACACCACCAAGACTCCGCTCTGGCGCGGCGGCCCCTCCGGCCCCAAGTCGCTGTGCAACGCGTGCGGGATCCGGTACCGGAAGAAGAGACGGGAGGCGCTGGGGCTCGACGCCGGCGAGGGCGGCGCGGAGCGGCAGGAGAAGAAGAAGAGCAAGAGGGAGAGAGGGGAGGAGGTGACCATGGAGCTCCGCATGGTGGGGTTCGGGAAGGAGGTGGTCCTGAAGCAGCGGCGGCGGATGCGGCGGAGGAGACGCCTCGGCGAGGAGGAGAAGGCGGCCATCCTCCTCATGGCCCTCTCCTCCGGAGTCATCTACGCCTGAACCACCACCCTACCTACCTACCCACCTAGCAACAGCAAGAGAGAGAGAAGCAGAGGAAAGGAGGCAGCCATGGGAAAGAGTGATTTGCTTGCTTAACATGCATGATCTCAACCGGGAGAGACTAGACAGATCTCTACCCTTTTTTTTTCTTCTCCCCTGCTTAGTTTTTCCAGCTAATTAGTTCGATCAAAGTG ]
[+] EMBL CB666431 [ TCCTCCTTGCTTCTCCCGCCCCTTAACCCCTACTGCTCCCTCCCAGTAGCCGGTGCTAACCCTAGCTTGCTAGCTAGATTGCTCTCTCTGGTAGTAGTAGATCCGTGGAGTGGAGATCTGCCCGCGGATCGAGCGGCGGCGGCAGAGCACCAGCCGTGTCTGCGGCGCGGTGTGCGCGGGTGTTGCGGAGCGGCGGCTGAGCGGAGGTGTGGGAGGAGGGGGAGTGCTGCGGCTTCCGGGGTGTTAGATCCGCCGATCCTGGCGCCGGAGATGGATTCCTCGTCGGTCGAGAAGGGGAGTGGGTCGATAGATCCGGACGAGCGCACGGCCTCCGGCGAGCCCAAGGCGTGCACCGACTGCCACACCACCAAGACTCCGCTCTGGCGCGGCGGCCCCTCCGGCCCCAAGTCGCTGTGCAACGCGTGCGGGATCCGGTACCGGAAGAAGAGACGGGAGGCGCTGGGGCTCGACGCCGGCGAGGGCGGCGCGGAGCGGCAGGAGAAGAAGAAGAGCAAGAGGGAGAGAGGGGAGGAGGTGACCATGGAGCTCCGCATGGTGGGGTTCGGGAAGGAGGTGGTCCTGAAGCAGCGGCGGCGGATGCGGCGGAGGAGACGCCTCGGCGAGGAGGAGAAGGCGGCCATCCTCCTCATGGCCCTCTCCTCCGGAGTCATCTACGCCTGAACCACCACCCTACCTACCTACCCACCTAGCAACAGCAAGAGAGAGAGAAGCAGAGGAAAGGAGGCAGCCATGGGAAAGAGTGATTTGCTTGCTT ACATGCATGATCTCAACCGGGAGAGACTAGA ]
[-] EMBL CB672323 [ GATCCGGACGAGCGCACGGCCTCCGGCGAGCCCAAGGCGTGCACCGACTGCCACACCACCAAGACTCCGCTCTGGCGCGGCGGCCCCTCCGGCCCCAAGTCGCTGTGCAACGCGTGCGGGATCCGGTACCGGAAGAAGAGACGGGAGGCGCTGGGGCTCGACGCCGGCGAGGGCGGCGCGGAGCGGCAGGAGAAGAAGAAGAGCAAGAGGGAGAGAGGGGAGGAGGTGACCATGGAGCTCCGCATGGTGGGGTTCGGGAAGGAGGTGGTCCTGAAGCAGCGGCGGCGGATGCGGCGGAGGAGACGCCTCGGCGAGGAGGAGAAGGCGGCCATCCTCCTCATGGCCCTCTCCTCCGGAGTCATTTACGCCTGAACCACCACCCTACCTACCTACCCACCTAGCAACAGCAAGAGAGAGAGAAGCAGAGGAAAGGAGGCAGCCATGGGAAAGAGTGATTTGCTTGCTTAACATGCATGATCTCAACCGGGAGAGACTAGACAGATCTCTACCC TTTTTTTTCTTCTCCCCTGCTTAGTTTTTCCAGCTAATTAGTTCGATCAAAGTGG]
[-] EMBL CB666432 [ CCTACCTACCCACCTAGCAACAGCAAGAGAGAGAGAAGCAGAGGAAAGGAGGCAGCCATGGGAAAGAGTGATTTGCTTGCTTAACATGCATGATCTCAACCGGGAGAGACTAGACAGATCTCTACCC TTTTTTTTCTTCTCCCCTGCTTAGTTTTTCCAGCTAATTAGTTCGATCAAAGTGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10570#0 AATCCAAATCCCTCCCCCTTTTTNTTCTNACCCTCACCACCTCATCCTCCACCACCACCA 60
consensus_10570#1 -------------------------------------------------CACCACCACCA 11
***********
consensus_10570#0 TTCCCTCTTCTTCTCCTCCTCCTTGCTTCTNCCGCCCCTTAACCCCTACTGCTCCCTCCC 120
consensus_10570#1 TTCCCTCTTCTTCTCCTCCTCCTTGCTTCTCCCGCCCCTTAACCCCTACTGCTCCCTCCC 71
****************************** *****************************
consensus_10570#0 AGTAGCCGGTGCTAACCCTAGCTTGCTAGCTAGATTGCTCTCTCTGGTAGTAGTAGATCC 180
consensus_10570#1 AGTAGCCGGTGCTAACCCTAGCTTGCTAGCTAGATTGCTCTCTCTGGTAGTAGTAGATCC 131
************************************************************
consensus_10570#0 GTGGAGTGGAGATCTGCCCGCGGATCGAGCGGCGGCGGCAGAGCACCAGCCGTGTCTGCG 240
consensus_10570#1 GTGGAGTGGAGATCTGCCCGCGGATCGAGCGGCGGCGGCAGAGCACCAGCCGTGTCTGCG 191
************************************************************
consensus_10570#0 GCGCGGTGTGCGCGGGTGTTGCGGAGCGGCGGCTGAGCGGAGGTGTGGGAGGAGGGGGAG 300
consensus_10570#1 GCGCGGTGTGCGCGGGTGTTGCGGAGCGGCGGCTGAGCGGAGGTGTGGGAGGAGGGGGAG 251
************************************************************
consensus_10570#0 TGCTGCGGCTTCCGGGGTGTTAGATCCGCCGATCCTGGCGCCGGAGATGGATTCCTCGTC 360
consensus_10570#1 TGCTGCGGCTTCCGGGGTGTTAGATCCGCCGATCCTGGCGCCGGAGATGGATTCCTCGTC 311
************************************************************
consensus_10570#0 GGTCGAGAAGGTGAAGCTTCCGATCCGTGGGTTCTTGGGGGGCTCGATCTGTGGCTGGAA 420
consensus_10570#1 GGTCGAGAAGG------------------------------------------------- 322
***********
consensus_10570#0 TGGCGCCTTGGCTGGGTGGTTTTTTGACGCTCGATCTGTGGGTTGCAGGGGAGTGGGTCG 480
consensus_10570#1 -------------------------------------------------GGAGTGGGTCG 333
***********
consensus_10570#0 ATAGATCCGGACGAGCGCACGGCCTCCGGCGAGCCCAAGGCGTGCACCGACTGCCACACC 540
consensus_10570#1 ATAGATCCGGACGAGCGCACGGCCTCCGGCGAGCCCAAGGCGTGCACCGACTGCCACACC 393
************************************************************
consensus_10570#0 ACCAAGACTCCGCTCTGGCGCGGCGGCCCCTCCGGCCCCAAGGTGAGATGAGATCCGATC 600
consensus_10570#1 ACCAAGACTCCGCTCTGGCGCGGCGGCCCCTCCGGCCCCAAG------------------ 435
******************************************
consensus_10570#0 TGCTCCTCCTGCTCTTCCCTTTCTCGATCTGTGCATTTTTTTCGCCTGGGTTTTCGGTGG 660
consensus_10570#1 ------------------------------------------------------------
consensus_10570#0 TTGATCCGCCCGATCTGTGTTTTTTTTTTTGCTTTGATCCAGTCGCTGTGCAACGCGTGC 720
consensus_10570#1 ------------------------------------------TCGCTGTGCAACGCGTGC 453
******************
consensus_10570#0 GGGATCCGGTACCGGAAGAAGAGACGGGAGGCGCTGGGGCTCGACGCCGGCGAGGGCGGC 780
consensus_10570#1 GGGATCCGGTACCGGAAGAAGAGACGGGAGGCGCTGGGGCTCGACGCCGGCGAGGGCGGC 513
************************************************************
consensus_10570#0 GCGGAGCGGCAGGAGAAGAAGAAGAGCAAGAGGGAGAGAGGGGAGGAGGTGACCATGGAG 840
consensus_10570#1 GCGGAGCGGCAGGAGAAGAAGAAGAGCAAGAGGGAGAGAGGGGAGGAGGTGACCATGGAG 573
************************************************************
consensus_10570#0 CTCCGCATGGTGGGGTTCGGGAAGGAGGTGGTCCTGAAGCAGCGGCGGCGGATGCGGCGG 900
consensus_10570#1 CTCCGCATGGTGGGGTTCGGGAAGGAGGTGGTCCTGAAGCAGCGGCGGCGGATGCGGCGG 633
************************************************************
consensus_10570#0 AGGAGACGCCTCGGCGAGGAGGAGAAGGCGGCCATCCTCCTCATGGCCCTCTCCTCCGGA 960
consensus_10570#1 AGGAGACGCCTCGGCGAGGAGGAGAAGGCGGCCATCCTCCTCATGGCCCTCTCCTCCGGA 693
************************************************************
consensus_10570#0 GTCATCTACGCCTGAACCACCACCCTACCTACCTACCCACCTAGCAACAGCAAGAGAGAG 1020
consensus_10570#1 GTCATCTACGCCTGAACCACCACCCTACCTACCTACCCACCTAGCAACAGCAAGAGAGAG 753
************************************************************
consensus_10570#0 AGAAGCAGAGGAAAGGAGGCAGCCATGGGAAAGAGTGATTTGCTTGCTTAACATGCATGA 1080
consensus_10570#1 AGAAGCAGAGGAAAGGAGGCAGCCATGGGAAAGAGTGATTTGCTTGCTTAACATGCATGA 813
************************************************************
consensus_10570#0 TCTCAACCGGGAGAGACTAGACAGATCTCTACCCTTTTTTTTTCTTCTCCCCTGCTTAGT 1140
consensus_10570#1 TCTCAACCGGGAGAGACTAGACAGATCTCTACCCTTTTTTTT-CTTCTCCCCTGCTTAGT 872
****************************************** *****************
consensus_10570#0 TTTTCCAGCTAATTAGTTCGATCAAAGTG- 1169
consensus_10570#1 TTTTCCAGCTAATTAGTTCGATCAAAGTGG 902
*****************************
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||