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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10601#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1046 fasta sequence
[AACAATGAGGTGTCATCTCACTTTATACGGTTGCCAAAAGGTAGCACTATGTCTGATTTGATTGAGGACATGAAATCCAAGGTTGAGTTATCTTATAGTGATGCTGAATTCCGGTTATTTGAGGTCTACAAAAACAAGATACGCAAGGTGTATCAACCTTCGGAGAAAATTTCAGTTAATGAATTCAATGGACTGTTATGNTGTTGAAGAGGTTCCTGAAGAAGAGAAAAATGCTGGTGTGCGAGACCGTTTGGTTCATGTCTGTCACTTCATCATAGAAAAACAGCACATTGATTACTACGGAGAACCTTTCTTCTTCCTTATCCGTGATGGTGAGACATTATCAGATATCAAAGTGCGTATTCAGAAGAAACTTCTGGTTTCTGATGAGCAGTTTGCGAAGTGGAAATTTGCTTATATTGCTCAC-AATCGCCTGGCTGGTGAATACTTTCAAAGATTCAGATATCGTATTGAGCCGATTCCAGAAAGATTTTTATGGACCATGGGAACAATGCCTAGGACTTGAGCACTCAGACGTCACCCCAAAAAGGTCATGCTTGTCCAATCAGAACCGCAATTCTTTCGATAAGGCTGTGAAGATTTTCAACTAGAGGTGGTTAAATTATCACATTTATGTGATGTATCCAGAGCTCTCACCTGCCGTAGTACAAGCTAATGAGATCATCAAGAGCACCTTAATTTATTCCTCACCCGGCAAAGTTCATTGTCTTCTTCTAGACATATAGTCATTATTTTGGTCTGCGCAAGAAGGCGTTGCACAGTCTGGTGTGGTCGGTTGAAAGAAATTTTCCATCTGGTTGGGTGTACAGGGTTCTTTAATGTTGGAATTCTTAGTTGTTTTTAGGTAGATTCTGAAAGCTGTATATTGGGCATGGGCTGATCATCCCAGTGGTTTTTGTTTCACCATGGGGTTTTGTGGGATAACTGTTGATGCCCACATAATATGATCGAAATCTATTTCAGGTTTAAATCGAAAGGGGAATCTGTTTTCGTTTGTAACGTTAAACTACACATTTTGAGAAAAA]
[+] EMBL CF331077 [AACAATGAGGTGTCATCTCACTTTATACGGTTGCCAAAAGGTAGCACTATGTCTGATTTGATTGAGGACATGAAATCCAAGGTTGAGTTATCTTATAGTGATGCTGAATTCCGGTTATTTGAGGTCTACAAAAACAAGATACGCAAGGTGTATCAACCTTCGGAGAAAATTTCAGTTAATGAATTCAATGGACTGTTATGNTGTTGAAGAGGTTCCTGAAGAAGAGAAAAATGCTGGTGTGCGAGACCGTTTGGTTCATGTCTGTCACTTCATCATAGAAAAACAGCACATTGATTACTACGGAGAACCTTTCTTCTTCCTTATCCGTGATGGTGAGACATTATCAGATATCAAAGTGCGTATTCAGAAGAAACTTCTGGTTTCTGATGAGCAGTTTGCGAAGTGGAAATTTGCTTATATTGCTCAC AATCGCCTGGCTGGTGAATACTTTC AAGATTCAGATATCGTATTGAGCCGATTCCAGAAAGATTTTTATGGACCATGGGAACAATGCCTAGGACTTGAGCACTCAGACGTCACCCCAAAAAGGTCATGCTTGTCCAATCAGAACCG ]
[+] EMBL C27385 [ GGTTGAGTTATCTTATAGTGATGCTGAATTCCGGTTATTTGAGGTCTACAAAAACAAGATACGCAAGGTGTATCAACCTTCGGAGAAAATTTCAGTTAATGAATTCAATGGACTGTTATG TGTTGAAGAGGTTCCTGAAGAAGAGAAAAATGCTGGTGTGCGAGACCGNTTNGTTCATGTCTGTCACTTCATCATAGANAAACAGCACATTGATTACTACGGAGAACCTTTCTTCTn ]
[+] EMBL AU100815 [ GCTTATATTGCTCACAAATCGCCTGGCTGGTGAATACTTTCAAAGATTCAGATATCGTATTGANCCGATTCCAGAAAGATGTTTATGGACCATGGGNACAATGCCTAGGACTTGAGCACTCAGNCGTCACCCCAAAAAGGTCATGCTTGTCCAATCAGAACCGCAATTCTTTCGATAAGGCTGTGAAGATTTTCAACTAGAGGTGGTTAAATTATCACATTTATGTGATGTATCCAGAGCTCTCACCTGCCGTAGTACAAGCTAATGAGATCATCAAGAGCACCTTAATTTATTCCTCACCCGGCAAAGTTCATTGTCTTCTTCTAGACATATAGTCATTATTTTGGTCTGCGCAAGAAGGCGTTGCACAGTCTGGTGTGGTCGGTTGAAAGAAATTTTCCATCTGGTTGGGTGTACAGGGTTCTTTAATGTTGGAATTCTTAGTTGTTTTTAGGTAGATTCTGAAAGCTGTATATTGGGCATGGGCTGATCATCCCAGTGGTTTTTGTTTCACCATGGGGTTTTGTGGGATAACTGTTGATGCCCACATAATATGATCGAAATCTATTTCAGGTTTAAATCGAAAGGGGAATCTGTTTTCGTTTGTAACGTTAAACTACACATTTTGAGAAAAA]
[-] EMBL CF331078 [ cAAGATTCAGATATCGTATTGAGCCGATTCCAGAAAGATTTTTATGGACCATGGGAACAATGCNTAGGACTTGAGCACTCAGACGTCACCCCAAAAAGGTCATGCTTGTCCAATCAGAACCGCAATTCTTTCGATAAGGCTGTGAAGATTTTCAACTAGAGGTGGTTAAATTATCACATTTATGTGATGTATCCAGAGCTCTCACCTGCCGTAGTACAAGCTAATGAGATCATCAAGAGCACCTTAATTTATTCCTCACCCGGCAAAGTTCATTGTCTTCTTCTAGACATATAGTCATTATTTTGGTCTGCGCAAGAAGGCGTTGCACAGTCTGGTGTGGTCGGTTGAAAGAAATTTTCCATCTGGTTGGGTGTACAGGGTTCTAAAATGTTGGAATTCTTAGTTGTTTTTAGGTAGATTCTGAAAGCTGTATATTGGGCATGGGCTGATCATCCCAGTGGTTTTTGTTTCACCATGGGGTTTTGTGGGATAACTGTTGATGCCCACATAATATGATCGAAATCTATTTCAGGTTTAAAaaa ]
[+] EMBL CF332060 [ AAAAGGTCATGCTTGTCCAATCAGAACCGCAATTCTTTCGATAAGGCTGTGAAGATTTTCAACTAGAGGTGGTTAAATTATCACATTTATGTGATGTATCCAGAGCTCTCACCTGCCGTAGTACAAGCTAATGAGATCATCAAGAGCACCTTAATTTATTCCTCACCCGGCAAAGTTCATTGTCTTCTTCTAGACATATAGTCATTATTTTGGTCTGCGCAAGAAGGCGTTGCACAGTCTGGTGTGGTCGGTTGAAAGAAATTTTCCATCTGGTTGGGTGTACAGGGTTCTTTAATGTTGGAATTCTTAGTTGTTTTTAGGTAGATTCTGAAAGCTGTATATTGGGCATGGGCTGATCATCCCAGTGGTTTTTGTTTCACCATGGGGTTTTGTGGGATAACTGTTGATGCCCACATAATATGATCGAAATCTATTTCAGGTTTAAATCG ]
consensusID : consensus_10601#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 439 fasta sequence
[TCCANGAGCTCTCACCTGCCGTAGTACAAGCTAATGAGATCATCAAGAGCNCCTTAATTTATTCCTCACCCCGGCCAAGTTCATTGTCTTCTTCTAGACATGTATAGTCATTATTTTGGTCTGCGCCNAGAAGGCGTTGCACCACGTCTGGTGTGGTCGGTTGAAAGAAATTTTCCACTCTGGTTGGGTGTACCACGGGTTCTTTAATGTTGGAATTCTTAGTTGTTTTTAGGTAGATTCTGAAAGCTGTATATTGGGCACTGGGCTGATCATCCCCGTGGTTTTTGTTTCACCCCTGGGGTTTTGTGGGATAACTGTTGATGCCCACATAATATGATCGAAATCTATTTCAGGTTTAAATCGAAAGGGGAATCTGTTTTCGTTTGTAACGTTTTAGTATAAATATATTCTTTCGCAAACTACACACTTTTGAGAAAAA]
[+] EMBL BM421576 [TCCANGAGCTCTCACCTGCCGTAGTACAAGCTAATGAGATCATCAAGAGCNCCTTAATTTATTCCTCACCCCGGCCAAGTTCATTGTCTTCTTCTAGACATGTATAGTCATTATTTTGGTCTGCGCCNAGAAGGCGTTGCACCACGTCTGGTGTGGTCGGTTGAAAGAAATTTTCCACTCTGGTTGGGTGTACCACGGGTTCTTTAATGTTGGAATTCTTAGTTGTTTTTAGGTAGATTCTGAAAGCTGTATATTGGGCACTGGGCTGATCATCCCCGTGGTTTTTGTTTCACCCCTGGGGTTTTGTGGGATAACTGTTGATGCCCACATAATATGATCGAAATCTATTTCAGGTTTAAATCGAAAGGGGAATCTGTTTTCGTTTGTAACGTTTTAGTATAAA ]
[+] EMBL BI808038 [ AATGTTGGAATTCTTAGTTGTTTTTAGGTAGATTCTGAAAGCTGTATATTGGGCA TGGGCTGATCATCCCAGTGGTTTTTGTTTCA CCATGGGGTTTTGTGGGATAACTGTTGATGCCCACATAATATGATCGAAATCTATTTCAGGTTTAAATCGAAAGGGGAATCTGTTTTCGTTTGTAACGTTTTAGTATAATTATATTCTTTCGCAAACTACACACTTTTGAGAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10601#0 AACAATGAGGTGTCATCTCACTTTATACGGTTGCCAAAAGGTAGCACTATGTCTGATTTG 60
consensus_10601#1 ------------------------------------------------------------
consensus_10601#0 ATTGAGGACATGAAATCCAAGGTTGAGTTATCTTATAGTGATGCTGAATTCCGGTTATTT 120
consensus_10601#1 ------------------------------------------------------------
consensus_10601#0 GAGGTCTACAAAAACAAGATACGCAAGGTGTATCAACCTTCGGAGAAAATTTCAGTTAAT 180
consensus_10601#1 ------------------------------------------------------------
consensus_10601#0 GAATTCAATGGACTGTTATGNTGTTGAAGAGGTTCCTGAAGAAGAGAAAAATGCTGGTGT 240
consensus_10601#1 ------------------------------------------------------------
consensus_10601#0 GCGAGACCGTTTGGTTCATGTCTGTCACTTCATCATAGAAAAACAGCACATTGATTACTA 300
consensus_10601#1 ------------------------------------------------------------
consensus_10601#0 CGGAGAACCTTTCTTCTTCCTTATCCGTGATGGTGAGACATTATCAGATATCAAAGTGCG 360
consensus_10601#1 ------------------------------------------------------------
consensus_10601#0 TATTCAGAAGAAACTTCTGGTTTCTGATGAGCAGTTTGCGAAGTGGAAATTTGCTTATAT 420
consensus_10601#1 ------------------------------------------------------------
consensus_10601#0 TGCTCACAATCGCCTGGCTGGTGAATACTTTCAAAGATTCAGATATCGTATTGAGCCGAT 480
consensus_10601#1 ------------------------------------------------------------
consensus_10601#0 TCCAGAAAGATTTTTATGGACCATGGGAACAATGCCTAGGACTTGAGCACTCAGACGTCA 540
consensus_10601#1 ------------------------------------------------------------
consensus_10601#0 CCCCAAAAAGGTCATGCTTGTCCAATCAGAACCGCAATTCTTTCGATAAGGCTGTGAAGA 600
consensus_10601#1 ------------------------------------------------------------
consensus_10601#0 TTTTCAACTAGAGGTGGTTAAATTATCACATTTATGTGATGTATCCAGAGCTCTCACCTG 660
consensus_10601#1 ------------------------------------------TCCANGAGCTCTCACCTG 18
* *************
consensus_10601#0 CCGTAGTACAAGCTAATGAGATCATCAAGAGCACCTTAATTTATTCCTCACCC-GGCAAA 719
consensus_10601#1 CCGTAGTACAAGCTAATGAGATCATCAAGAGCNCCTTAATTTATTCCTCACCCCGGCCAA 78
******************************** ******************** *** **
consensus_10601#0 GTTCATTGTCTTCTTCTAGACAT--ATAGTCATTATTTTGGTCTGCGC-AAGAAGGCGTT 776
consensus_10601#1 GTTCATTGTCTTCTTCTAGACATGTATAGTCATTATTTTGGTCTGCGCCNAGAAGGCGTT 138
*********************** *********************** **********
consensus_10601#0 GCACA--GTCTGGTGTGGTCGGTTGAAAGAAATTTTCCA-TCTGGTTGGGTGTACA--GG 831
consensus_10601#1 GCACCACGTCTGGTGTGGTCGGTTGAAAGAAATTTTCCACTCTGGTTGGGTGTACCACGG 198
**** ******************************** *************** **
consensus_10601#0 GTTCTTTAATGTTGGAATTCTTAGTTGTTTTTAGGTAGATTCTGAAAGCTGTATATTGGG 891
consensus_10601#1 GTTCTTTAATGTTGGAATTCTTAGTTGTTTTTAGGTAGATTCTGAAAGCTGTATATTGGG 258
************************************************************
consensus_10601#0 CA-TGGGCTGATCATCCCAGTGGTTTTTGTTTCACCA-TGGGGTTTTGTGGGATAACTGT 949
consensus_10601#1 CACTGGGCTGATCATCCCCGTGGTTTTTGTTTCACCCCTGGGGTTTTGTGGGATAACTGT 318
** *************** ***************** **********************
consensus_10601#0 TGATGCCCACATAATATGATCGAAATCTATTTCAGGTTTAAATCGAAAGGGGAATCTGTT 1009
consensus_10601#1 TGATGCCCACATAATATGATCGAAATCTATTTCAGGTTTAAATCGAAAGGGGAATCTGTT 378
************************************************************
consensus_10601#0 TTCGTTTGTAACGTT-----------------------AAACTACACA-TTTTGAGAAAA 1045
consensus_10601#1 TTCGTTTGTAACGTTTTAGTATAAATATATTCTTTCGCAAACTACACACTTTTGAGAAAA 438
*************** ********** ***********
consensus_10601#0 A 1046
consensus_10601#1 A 439
*
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||