These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10617#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1641 fasta sequence [AGTAAAACCGTGAAACCGAGGAGCTTGTTAAGAATCTGGAGTCCGAGGTTTCACGTTCTGAAGGCCAACTAGAGGAAGCCAGAATTATTGAGGAGAGGTTACCGAGACGGAAAAACTGATTGAGGAGCTTAAATCAGAGGTTGCTGATGCGAAGAAGGCCGAATCAGAAGCCCGTCAGCTATTCGAAGAATGGAAGCACAAGGCAGGATTGCTTGAAATGGAATTGGAGGCAGTTACTCTCTCAGATAAGTTCAAAGGTGAATCGCTTGCCTCCACAACAGAAGAATTGGGTAAGATCCAGTCTGCATTACACAGATAGAGAATCTGAAATTGAAGTGCTCAAAGGAAAGACAACTGCCCTTGGAAATTGAGGTAGCAAGGCTTTTAGCAGATGTCAACGAATCCACGAGCATTTGATGCATCTCAGCAAGAGGTG-TTTGGGCTACAGACGACTATAGATGTTCTGAGAAACAAGCTTGAGGCTGCTGAAGAAGCAGCTTCAGAGGCCTTAAAC-ATGAGAAGGCCGCGAATGTAAAGATTGAAGGCCTGACCGAGGAGAATGTGAAGCTAATAAGCGAGTTGAACGAGACTAGGGATAGAAAAAAGAAGGAGAAAAGAGCAGTGGAAGATCTTACTGCTGCATTGAGTGAGGAATCTGACAAAGCAAAGGAAGCACATGAGAGGTATTTGAGCAAAGAAGATGACCACGAGCATGCCCTCGCGCAGATTGGTGATCTTAAGATGGCCCTAAAAAGCACCAAGGAGAGTTATGAGGTAATGCTTGATGAGGCAAACTATGACATCACTTGCTTAAGGAAAAATGTTGATAAATTGGAGGCTGAGGTGAACAAGTACAGAGAAGAATGTGAGTCTAAGGAGACTGACATTGTCAGGTTAAACAAGCAGTCGGAGGAAGAAATTAGTGCTCTTCAATTAGAAGTCGACAAGGCAGTGGAATCACTGCAAGATGCCGAGCACCAACTCCAAGTTGCCAACGAGGAGAAAGAAAAGCTTCAAGAGAGGCTGGTGTACACTGAATCAGCGTGTGCTGAGGCTAGCAAGGCTCTGCATGAGGCAAAGACTGAGAAGGAGAGTCTTAAAGAGAAACTGATTTACACAGAAGCTGCTGTTGCTGAAGCCAACAAGTCTGTGCAGGAGGCAACATATGAAAATTCACAACTGAAGGAGCGATTACTAGATAAAGAGAACGCACTGCAGAGCCTAACCCAGGAGAACGACGAGTTCAGGTTGCGAGAAGCTGATGCCATGAAGAAGATAGATGAATTGTCTGCCTTGCTTGCTGAAGCGATGATAAAGAAACATCCCGAGGAGGAGGAGAAGCTAGTGGTTGTGGACGANGCACACAGTTCTGTTCACGAAGAAGNTACAGATTCAGTGGTGGAAAATGGAGACGCAGAAAGCGAAACGATNAAAACCCTAACTGGAACTTGATGNTCTCAATAGGAGCTCCAATGGGGACATGAATCACGAAGAAGAGAAAGGCGAAACCANGNTGAGCAGGAGGAAGTNAAAACCGAGTGCNCCACACAGGAGAGCACAAAATCATCGNGAACAGCCCCTTCAGACAGAAACAGAAACCGNTNCTNCAANATGACTGGAGCCCAGGNGGNACCACACTGN] [+] EMBL BI805877 [AGTAAAACCGTGAAACCGAGGAGCTTGTTAAGAATCTGGAGTCCGAGGTTTCACGTTCTGAAGGCCAACTAGAGGAAGCCAGAATTATTGAGGAGAGGTTACCGAGACGGAAAAACTGATTGAGGAGCTTAAATCAGAGGTTGCTGATGCGAAGAAGGCCGAATCAGAAGCCCGTCAGCTATTCGAAGAATGGAAGCACAAGGCAGGATTGCTTGAAATGGAATTGGAGGCAGTTACTCTCTCAGATAAGTTCAAAGGTGAATCGCTTGCCTCCACAACAGAAGAATTGGGTAAGATCCAGTCTGCATTACACAGATAGAGAATCTGAAATTGAAGTGCTCAAAGGAAAGACAACTGCCCTTGGAAATTGAGGTAGCAAGGCTTTTAGCAGATGTCAACGAATCCACGAGCATTTGATGCATCTCAGCAAGAGGTGCTTTGGGCTACAGACGACTATAGATGTTCTGAGAAACAAGCTTGAGGCTGCTGAAGAAGCAGCTTCAGAGGCCTTAAAC ATGAGAAGGCCGCGAATGTAAAGATTGAAGGCCTGACCGAGGAGAATGTGAAGCTAATAAGCGAGTTGAACGAGACTAGGGATAGAAAAAA ] [+] EMBL BP184520 [ AGGTG TTTGGGCTACAGACGACTATAGATGTTCTGAGAAACAAGCTTGAGGCTGCTGAAGAAGCAGCTTCAGAGGCCTTAAACAATGAGAAGGCCGCGAATGTAAAGATTGAAGGCCTGACCGAGGAGAATGTGAAGCTAATAAGCGAGTTGAACGAGACTAGGGATAGAGAAGAGAAGGAGAAAAGAGCAGTGGAAGATCTTACTGCTGCATTGAGTGAGGAATCTGACAAAGCAAAGGAAGCACATGAGAGGTATTTGAGCAAAGAAGATGACCACGAGCATGCCCTCGCGCAGATTGGTGATCTTAAGATGGCCCTAAAAAGCACCAAGGAGAGTTATGAGGTAATGCTTGATGAGGCAAACTATGACATCACTTGCTTAAGGAAAAATGTTGATAAATTGGAGGCTGAGGTGAACAAGTACAGAGAAGAATGTGAGTCTAAGGAGACTGACATTGTCAGGTTAAACAAGCAGTCGGAGGAAGAAATTAGTGCTCTTCAATTAGAAGTCGACAAGGC ] [+] EMBL CB096255 [ TGAGGTAATGCTTGATGAGGCAAACTATGACATCACTTGCTTAAGGAAAAATGTTGATAAATTGGAGGCTGAGGTGAACAAGTACAGAGAAGAATGTGAGTCTAAGGAGACTGACATTGTCAGGTTAAACAAGCAGTCGGAGGAAGAAATTGGTGCTCTTCAATTAGAAGTCGACAAGGCAGTGGAATCACTGCAAGATGCCGAGCACCAACTCCAAGTTGCCAACGAGGAGAAAGAAAAGCTTCAAGAGAGGCTGGTGTACACTGAATCAGCGTGTGCTGAGGCTAGCAAGGCTCTGCATGAGGCAAAGACTGAGAAGGAGAGTCTTAAAGAGAAACTGATTTACACAGAAGCTGCTGTTGCTGAAGCCAACAAGTCTGTGCAGGAGGCAACATATGAAAATTCACAACTGAAGGAGCGATTACTAGATAAAGAGAACGCACTGCAGAGCCTAACCCAGGAGAACGACGAGTTCAGGTTGCGAGAAGCTGATGCCATGAAGAAGATAGATGAATTGTCTGCCTTGCTTGCTGAAGCGATGATAAAGAAACATCCCGAGGAGGAGGAGAAGCTAGTGGTTGTGGACGANGCACACAGTTCTGTTCACGAAGAAGNTACAGATTCAGTGGTGGAAAATGGAGACGCAGAAAGCGAAACGATNAAAACCCTAACTGGAACTTGATGNTCTCAATAGGAGCTCCAATGGGGACATGAATCACGAAGAAGAGAAAGGCGAAACCANGNTGAGCAGGAGGAAGTNAAAACCGAGTGCNCCACACAGGAGAGCACAAAATCATCGNGAACAGCCCCTTCAGACAGAAACAGAAACCGNTNCTNCAANATGACTGGAGCCCAGGNGGNACCACACTGN] consensusID : consensus_10617#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 813 fasta sequence [GAGAAGCTAGTGGTTGTGGACGAGGCATACAGTTCTGTTCACGAAGAAGTTACAGATTCAGTGGTGGAAAATGGAGACGCAGAAAGCGAAAACGATAAAAACCCTAAACTGGAACTTGATGTTCTCAATAGGAGCTCCAATGGGGACATGAATCACGAAGAAGAGAAAGGCGAAACCAAGGTTGAGCAGGAGGAAGTGAAAACCGAGTGCACCACACAGGAGAGCAACAAAATCATCGAGAAGCAGCCACATCCAGACAGAAAACAAGAAACCGTATCCTCCAAAGATGAACTGGAGCCCAAGGAGGATACCAACACTGAGCATCCAAATGGGACAGTATCAGAAGATACCAGCAAAGTGGCAATGTCCCCGACAAAACCACAGCAGCAACAGAAAAAGAACAAGCCTCTTCTGAAGAAGTTTGGGAGCTTACTGAAAAAGAAAAACAGCAAGTAGGTGAACGACACATGTACTACTATTGCTATTCTGATTTG-TTTTTTTTTGTTTGACAAGGTAGTGTGGTTTTCTACGAGTTTACTGTCAATGGCTGTACTTGTTCTGGTGATTGCAGTAGTTTGTGGGTGTCTCATTTTTTTTTATAATTTGGACCTCCTGTTCTTGCCCTGTGTCTGTGGTTGTTATCTACACGATTGTGGCAGCTCGAGTGTAACTGGAGTTCCTCCTGATCAGAATGGTTTTTCA-TTTCTGAGAATGTGCAGCTCCTTGTGATAAAATTCATGTAATGTAATGTACCAGTGACAACTCCTAATCATATTTGTTGGCATTCAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL CA999982 [GAGAAGCTAGTGGTTGTGGACGAGGCATACAGTTCTGTTCACGAAGAAGTTACAGATTCAGTGGTGGAAAATGGAGACGCAGAAAGCGAAAACGATAAAAACCCTAAACTGGAACTTGATGTTCTCAATAGGAGCTCCAATGGGGACATGAATCACGAAGAAGAGAAAGGCGAAACCAAGGTTGAGCAGGAGGAAGTGAAAACCGAGTGCACCACACAGGAGAGCAACAAAATCATCGAGAAGCAGCCACATCCAGACAGAAAACAAGAAACCGTATCCTCCAAAGATGAACTGGAGCCCAAGGAGGATACCAACACTGAGCATCCAAATGGGACAGTATCAGAAGATACCAGCAAAGTGGCAATGTCCCCGACAAAACCACAGCAGCAACAGAAAAAGAACAAGCCTCTTCTGAAGAAGTTTGGGAGCTTACTGAAAAAGAAAAACAGCAAGTAGGTGAACGACACATGTACTACTATTGCTATTCTGATTTG TTTTTTTTTGTTTGACAAGGTAGTGTGGTTTTCTACGAGTTTACTGTCAATGGCTGTACTTGTTCTGGTGATTGCAGTAGTTTGTGGGTGTCTCATTTTTTTTTATAATTTGGACCTCCTGTTCTTGCCCTGTGTCTGTGGTTGTTATCTACACGATTGTGGCAGCTCGAGTGCAACTGGAGTTCCTCCTGATCAGAATGGTTTTTCA TTTCTGAGAATGTGCAGCTCCTTGTGATAAAATTCATGTAATGTAATGTACCAGTGACAACTCCTAATCATATTTGTTGGCATTCAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL CA766213 [ AGAAGCTAGTGGTTGTGGACGAGGCACACAGTTCTGTTCACGAAGAAGTTACAGATTCAGTGGTGGAAAATGGAGACGCAGAAAGCGAAAACGATAAAAACCCTAAACTGGAACTTGATGTTCTCAATAGGAGCTCCAATGGGGACATGAATCACGAAGAAGAGAAAGGCGAAACCAAGGTTGAGCAGGAGGAAGTAAAAACCGAGTGCACCACACAGGAGAGCAACAAAATCATCGAGAAGCAGCCACATCCAGACAGAAAACAAGAAACCGTATCCTCCAAAGATGAACTGGAGCCCAAGGAGGATACCAACACTGAGCATCCAAATGGGACAGTATCAGAAGATACCAGCAAAGTGGCAATGTCCCCGACAAAACCACAGCAGCAACAGAAAAAGAACAAGCCTCTTCTGAAGAAGTTTGGGAGCTTACTGAAAAAGAAAAACAGCAAGTAGGTGAACGACACATGTACTACTATTGCTATTCTGATTTGTTTTTTTTTTGTTTGACAAGGTAGTGTGGTTTTCTACGAGTTTACTGTCAATGGCTGTACTTGTTCTGGTGATTGCAGTAGTTTGTGGGTGTCTCATTTTTTTTTATAATTTGGACCTCCTGTTCTTGCCCTGTGTCTGTGGTTGNTATCTACACGATTGTGGCAGCTCGAGTGTAACTGGAGTTCCTCCTGATCAGAATGGNTTTTCATTTTCTGAGAATGTGCAGCTCCTTGTGATAAAATTCATGTAATGGAATGTACCAGNGACAACTCCTAATCATATTTGTT ] [+] EMBL BP184521 [ CCCTAAACTGGAACTTGATGTTCTCAATAGGAGCTCCAATGGGGACATGAATCACGAAGAAGAGAAAGGCGAAACCAAGGTTGAGCAGGAGGAAGTGAAAACCGAGTGCACCACACAGGAGAGCAACAAAATCATCGAGAAGCAGCCACATCCAGACAGAAAACAAGAAACCGTATCCTCCAAAGATGAACTGGAGCCCAAGGAGGATACCAACACTGAGCATCCAAATGGGACAGTATCAGAAGATACCAGCAAAGTGGCAATGTCCCCGACAAAACCACAGCAGCAACAGAAAAAGAACAAGCCTCTTCTGAAGAAGTTTGGGAGCTTACTGAAAAAGAAAAACAGCAAGTAGGTGAACGACACATGTACTACTATTGCTATTCTGATTTG TTTTTTTTTGTTTGACAAGGTAGTGTGGTTTTCTACGAGTTTACTGTCAATGGCTGTACTTGTTCTGGTGATTGCAGTAGTTTGTGGGTGTCTCATTTTTTTTTATAATTTGGACCTCCTGTTCTTGCCCTGTGTCTGTGGTTGTTATCTACACGATTGTGGCAGCTCGAGTGTAACTGGAGTTCCTCCTGATCAAAAaa ] [+] EMBL AK062482 [ GAGAAAGGCGAAACCAAGGTTGAGCAGGAGGAAGTGAAAACCGAGTGCACCACACAGGAGAGCAACAAAATCATCGAGAAGCAGCCACATCCAGACAGAAAACAAGAAACCGTATCCTCCAAAGATGAACTGGAGCCCAAGGAGGATACCAACACTGAGCATCCAAATGGGACAGTATCAGAAGATACCAGCAAAGTGGCAATGTCCCCGACAAAACCACAGCAGCAACAGAAAAAGAACAAGCCTCTTCTGAAGAAGTTTGGGAGCTTACTGAAAAAGAAAAACAGCAAGTAGGTGAACGACACATGTACTACTATTGCTATTCTGATTTG TTTTTTTTTGTTTGACAAGGTAGTGTGGTTTTCTACGAGTTTACTGTCAATGGCTGTACTTGTTCTGGTGATTGCAGTAGTTTGTGGGTGTCTCATTTTTTTTTATAATTTGGACCTCCTGTTCTTGCCCTGTGTCTGTGGTTGTTATCTACACGATTGTGGCAGCTCGAGTGTAACTGGAGTTCCTCCTGATCAGAATGGTTTTTCA TTTCTGAGAATGTGCAGCTCCTCCTGATAAAATTCATGTAATGTAATGTACCAGTGACAACTCCTAATCATATTT ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10617#0 AGTAAAACCGTGAAACCGAGGAGCTTGTTAAGAATCTGGAGTCCGAGGTTTCACGTTCTG 60 consensus_10617#1 ------------------------------------------------------------ consensus_10617#0 AAGGCCAACTAGAGGAAGCCAGAATTATTGAGGAGAGGTTACCGAGACGGAAAAACTGAT 120 consensus_10617#1 ------------------------------------------------------------ consensus_10617#0 TGAGGAGCTTAAATCAGAGGTTGCTGATGCGAAGAAGGCCGAATCAGAAGCCCGTCAGCT 180 consensus_10617#1 ------------------------------------------------------------ consensus_10617#0 ATTCGAAGAATGGAAGCACAAGGCAGGATTGCTTGAAATGGAATTGGAGGCAGTTACTCT 240 consensus_10617#1 ------------------------------------------------------------ consensus_10617#0 CTCAGATAAGTTCAAAGGTGAATCGCTTGCCTCCACAACAGAAGAATTGGGTAAGATCCA 300 consensus_10617#1 ------------------------------------------------------------ consensus_10617#0 GTCTGCATTACACAGATAGAGAATCTGAAATTGAAGTGCTCAAAGGAAAGACAACTGCCC 360 consensus_10617#1 ------------------------------------------------------------ consensus_10617#0 TTGGAAATTGAGGTAGCAAGGCTTTTAGCAGATGTCAACGAATCCACGAGCATTTGATGC 420 consensus_10617#1 ------------------------------------------------------------ consensus_10617#0 ATCTCAGCAAGAGGTGTTTGGGCTACAGACGACTATAGATGTTCTGAGAAACAAGCTTGA 480 consensus_10617#1 ------------------------------------------------------------ consensus_10617#0 GGCTGCTGAAGAAGCAGCTTCAGAGGCCTTAAACATGAGAAGGCCGCGAATGTAAAGATT 540 consensus_10617#1 ------------------------------------------------------------ consensus_10617#0 GAAGGCCTGACCGAGGAGAATGTGAAGCTAATAAGCGAGTTGAACGAGACTAGGGATAGA 600 consensus_10617#1 ------------------------------------------------------------ consensus_10617#0 AAAAAGAAGGAGAAAAGAGCAGTGGAAGAT-CTTACTGCTGCATTGAGTGAGGAATCTGA 659 consensus_10617#1 ------GAGAAGCTAGTGGTTGTGGACGAGGCATACAGTTCTGTTCA-CGAAGAAGTTAC 53 ** ** * * ***** ** * *** * * ** * ** *** * consensus_10617#0 CAAAGCAAAGGAAGCACATGAGAGGTATTTGAGCAAAGAAGATGA---CCACGAGCATGC 716 consensus_10617#1 AGATTCAGTGGTGGAAAATGGAGACGCAGAAAGCGAAAACGATAAAAACCCTAAACTGGA 113 * ** ** * * *** *** ** * *** * ** * * * consensus_10617#0 CCTCG---CGCAGATTGGTGATCTTAAGATGGCCCTAAAAAGCACCAAGGAGAGTTATGA 773 consensus_10617#1 ACTTGATGTTCTCAATAGGAGCTCCAATGGGGACATGAATCACGAAGAAGAGAAAGGCGA 173 ** * * * * * ** ** * * ** * * **** ** consensus_10617#0 GGTAATGCTTGATGAGGCAAACTATGACATCACTTGCTTAAGGAAAAATGTTGATAAATT 833 consensus_10617#1 AACCAAGGTTGAGCAGGAGGAAGTGAAAACCGAGTGCACCACACAGGAGAGCAACAAAAT 233 * * **** *** * * * * *** * * * * *** * consensus_10617#0 GGAGGCTGAGGTGAACAAGTACAGAGAAGAATGTGAGTCTAAGGAGACTGACATTGTCAG 893 consensus_10617#1 CATCGA-GAAGCAGCCACATCCAGACAGAAA-------ACAAGAAACCGTATCCTCCAAA 285 * ** * ** * **** * ** *** * * * * * consensus_10617#0 GTTAAACAAGCAGTCGGAGGAAGAAATTAGTGCTCTTCAATTAGAAGTCGACAAGGCAGT 953 consensus_10617#1 GATGAACTGG-AGCCCAAGGAGGATACCAACACTGAGCATCCAAATG------GGACAGT 338 * * *** * ** * **** ** * * ** ** * * * * **** consensus_10617#0 GGAATCACTGCAAGATGCCGAGCACCAACTCCAAGTTGCCAACGAGGAGAAAGAAAAGCT 1013 consensus_10617#1 ------ATCAGAAGATACC-AGCAAAGTGGCAATGTCCCCGACAAAACCACAGCAGCAAC 391 * ***** ** **** * * ** ** ** * * ** * consensus_10617#0 TCAAGAGAGGCTGGTGTACACTGAATCAGCGTGTGCTGAGGCTAGCAAGGCTCTGCATGA 1073 consensus_10617#1 AGAAAAAGAACAAGCCTCTTCTGAAGAAGTTTGGGAGCTTACTGAAAAAGAAAAACAGCA 451 ** * * * * ***** ** ** * ** ** * ** * consensus_10617#0 GGCAAA-GACTGAGAAGGAGAGTCTTAAAGAGAAACTGATTTACACAGAAGCTGCTGTTG 1132 consensus_10617#1 AGTAGGTGAACGACACATGTACTACTATTGCTATTCTGATTTGTTTT----TTTTTGTTT 507 * * ** ** * * * ** * * ******* * **** consensus_10617#0 CTGAAGCCAACAAGTCTGTGCAGGAGGCAACATATGAAAATTCACAACTGAAGGAGCGAT 1192 consensus_10617#1 GACAAGGTAGTGTGGTTTTCTACGAGTTTAC-TGTCAATGGCTGTACTTGTTCTGGTGAT 566 *** * * * * * *** ** * * ** * ** * *** consensus_10617#0 TAC--TAGATAAAGAGAA-CGCACTGCAGAGCCTAACCCAGGAGAACGACGAGTTCAGGT 1249 consensus_10617#1 TGCAGTAGTTTGTGGGTGTCTCATTTTTTTTTATAATTTGGACCTCCTGTTCTTGCCCTG 626 * * *** * * * * ** * *** * * * * consensus_10617#0 TGCGAGAAGCTGATGCC---ATGAAGAAGATAGATGAATTGT--CTGCCTTGCTTGCTGA 1304 consensus_10617#1 TGTCTGTGGTTGTTATCTACACGATTGTGGCAGCTCGAGTGTAACTGGAGTTCCTCCTGA 686 ** * * ** * * * ** * ** * * *** *** * * * **** consensus_10617#0 AGCGATGATAAAGAAACATCCCGAGGAGGAGGAGAAGCTAGTGGTTGTGGACGANGCACA 1364 consensus_10617#1 --TCAGAATGGTTTTTCATTTC--TGAGAATGTGCAGCTCCTTGTGATAAAATTCATGTA 742 * ** *** * *** * * * **** * ** * * * consensus_10617#0 CAGTTCTGTTCACGAAGAAGNTACAGATT-CAGTGGTGGAAAATGGAGACGCAGAAAGCG 1423 consensus_10617#1 ATGTAATGTACCAGTGACAACTCCTAATCATATTTGTTGGCATTCAAAAAAAAAAAAAAA 802 ** *** * * * * * ** * * ** * * * * * * *** consensus_10617#0 AAACGATNAAAACCCTAACTGGAACTTGATGNTCTCAATAGGAGCTCCAATGGGGACATG 1483 consensus_10617#1 AAAAAAAAAAA------------------------------------------------- 813 *** * *** consensus_10617#0 AATCACGAAGAAGAGAAAGGCGAAACCANGNTGAGCAGGAGGAAGTNAAAACCGAGTGCN 1543 consensus_10617#1 ------------------------------------------------------------ consensus_10617#0 CCACACAGGAGAGCACAAAATCATCGNGAACAGCCCCTTCAGACAGAAACAGAAACCGNT 1603 consensus_10617#1 ------------------------------------------------------------ consensus_10617#0 NCTNCAANATGACTGGAGCCCAGGNGGNACCACACTGN 1641 consensus_10617#1 -------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||