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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10636#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 875 fasta sequence
[TCTCTCTCTCTCCCAATTATATTTGTAGAGAGAGGGAAGAAAAGAAGAGAGGGGAGGAGCAATGGCAGGGTCTGAGGAGAAGAAGGAGATGCAAGACCCCAGGACACAGGCCATAGCATCCACCATTAGAGTTGTGCCCAACTTCCCTAAGCCAGGAATAATGTTCCAAGATATCACGACCCTACTTCTAAATCCCCCTGTGTTCAAGGACACCATCGACTTGTTCGTTGAACGGTACACTGGCAAAGGCATCTCCGTTGTTGCTGGGGTCGAAGCTAGAGGG-TTTA-TTTTCGGTCCTCCCATAGCGCTCGCTATTGGTGCAAAATTTATCCCA-CTAAGAAAACCTAACAAACTTCCAGGTGAGGTGATGTCA-AAGGAGTACGAGCTGGAGTATGGCGCCGACTGCTTGGAAATGCACGTCGGCGCGGTACAGCCCGGCGAGCGAGCACTCGTCGTCGACGACCTCGTCGCCACCGGCGGCACGCTCTGTGCCGCCATCGTCTTGCTTGAGCGTGCTGGTGCAGAAGTGGTGGAGTGTGCATGTGTGATTGAGCTCCCGGAACTGAAGGGTCGTGAGAGGCTCAATGGGAAGCCACTGTACGTTCTGGTGGAGTCTCACTCCTAGCTTAGCTACATATATACCACTCTAGCTGCAGAATTTAATTCTTCTTCTTGGTGCATTCCACTATTCTGTCCATGTGTAGTTTAATTTTGTGTCTGCTTAAAATTCAGCACTCAGTGTGTAAGTGTACAACTCTAATGGATGGCAACTCTGCTGATCGCGGTGTGGGTGTAGTAACATCTTTCTTCCGTGGATTCGTTTTTTTTATTTGAATCGCTTTAGGTGTGTCCTTTCCA------AAAAAAAAAAAAAAAGG]
[+] EMBL AK108481 [TCTCTCTCTCTCCCAATTATATTTGTAGAGAGAGGGAAGAAAAGAAGAGAGGGGAGGAGCAATGGCAGGGTCTGAGGAGAAGAAGGAGATGCAAGACCCCAGGACACAGGCCATAGCATCCACCATTAGAGTTGTGCCCAACTTCCCTAAGCCAGGAATAATGTTCCAAGATATCACGACCCTACTTCTAAATCCCCCTGTGTTCAAGGACACCATCGACTTGTTCGTTGAACGGTACACTGGCAAAGGCATCTCCGTTGTTGCTGGGGTCGAAGCTAGAGGG TTTA TTTTCGGTCCTCCCATAGCGCTCGCTATTGGTGCAAAATTTATCCCA CTAAGAAAACCTAACAAACTTCCAGGTGAGGTGATGTCG AAGGAGTACGAGCTGGAGTATGGCGCCGACTGCTTGGAAATGCACGTCGGCGCGGTACAGCCCGGCGAGCGAGCACTCGTCGTCGACGACCTCGTCGCCACCGGCGGCACGCTCTGTGCCGCCATCGTCTTGCTTGAGCGTGCTGGTGCAGAAGTGGTGGAGTGTGCATGTGTGATTGAGCTCCCGGAACTGAAGGGTCGTGAGAGGCTCAATGGGAAGCCACTGTACGTTCTGGTGGAGTCTCACTCCTAGCTTAGCTACATATATACCACTCTAGCTGCAGAATTTAATTCTTCTTCTTGGTGCATTCCACTATTCTGTCCATGTGTAGTTTAATTTTGTGTCTGCTTAAAATTCAGCACTCAGTGTGTAAGTGTACAACTCTAATGGATGGCAACTCTGCTGATCGCGGTG ]
[+] EMBL CB658255 [ AGAGGGGAGGAGCAATGGCAGGGTCTGAGGAGAAGAAGGAGATGCAAGACCCCAGGACACAGGCCATAGCATCCACCATTAGAGTTGTGCCCAACTTCCCTAAGCCAGGAATAATGTTCCAAGATATCACGACCCTACTTCTAAATCCCCCTGTGTTCAAGGACACCATCGACTTGTTCGTTGAACGGTACACTGGCAAAGGCATCTCCGTTGTTGCTGGGGTCGAAGCTAGAGGG TTTA TTTTCGGTCCTCCCATAGCGCTCGCTATTGGTGCAAAATTTATCCCA CTAAGAAAACCTAACAAACTTCCAGGTGAGGTGATGTCA AAGGAGTACGAGCTGGAGTATGGCGCCGACTGCTTGGAAATGCACGTCGGCGCGGTACAGCCCGGCGAGCGAGCACTCGTCGTCGACGACCTCGTCGCCACCGGCGGCACGCTCTGTGCCGCCATCGTCTTGCTTGAGCGTGCTGGTGCAGAAGTGGTGGAGTGTGCATGTGTGATTGAGCTCCCGGAACTGAAGGGTCGTGAGAGGCTCAATGGGAAGCCACTGTACGTTCTGGTGGAGTCTCACTCCTAGCTTAGCTACATATATACCACTCTAGCTGCAGAATTTAATTCTTCTTCTTGGTGCATTCCACTATTCTGTCCATGTGTAGTTTAATTTTGTGTCTGCTTAAAATTCAGCACTCAGTGTGTAAGTGTACAACTCTAATGGATGGCAACTCTGCTGATCGCGGTGTGGGTGTAGTAA ]
[-] EMBL CB658256 [ ATCCACCATTAGAGTTGTGCCCAACTTCCTTAAGCCAGGAATAATGTTCCAAGATATCACGACCCTACTTCTAAATCCCCCTGTGTTCAAGGACACCATCGACTTGTTCGTTGAACGGTACACTGGCAAAGGCATCTCCGTTGTTGCTGGGGTCGAAGCTAGAGGG TTTA TTTTCGGTCCTCCCATAGCGCTCGCTATTGGTGCAAAATTTATCCCA CTAAGAAAACCTAACAAACTTCCAGGTGAGGTGATGTCA AAGGAGTACGAGCTGGAGTATGGCGCCGACTGCTTGGAAATGCACGTCGGCGCGGTACAGCCCGGCGAGCGAGCACTCGTCGTCGACGACCTCGTCGCCACCGGCGGCACGCTCTGTGCCGCCATCGTCTTGCTTGAGCGTGCTGGTGCAGAAGTGGTGGAGTGTGCATGTGTGATTGAGCTCCCGGAACTGAAGGGTCGTGAGAGGCTCAATGGGAAGCCACTGTACGTTCTGGTGGAGTCTCACTCCTAGCTTAGCTACATATATACCACTCTAGCTGCAGAATTTAATTCTTCTTCTTGGTGCATTCCACTATTCTGTCCATGTGTAGTTTAATTTTGTGTCTGCTTAAAATTCAGCACTCAGTGTGTAAGTGTCCAACTTTAATGGATGGCAACTCTGCTGATCGCGGTGTGGGTGTAGTAACATCTTTCTTCCGTGGATTCGTTTTTTTTATTTGAATCGCTTTAGGTGTGTCCTTTCCA AAAAAAAAAAAAAAAGG]
[-] EMBL CA760383 [ ACTTCTAAATCCCCCTGTG TCGAGGACACCATCGACTTGTTCGTTGAACGGTACACTGGCAAAGGCATTTCCGTTGTTGCTGGGGTCGAAGCTAGAGGG TTTA TNTTCGGTCCTCCCATAGCGCTCGCTATTGGTGCAAAATTTATCCCA CTAAGAAAACCTAACAAACTTCCAGGTGAGGTGATGTCA AAGGAGTACGAGCTGGAGTATGGCGCCGACTGCTTGGAAATGCACGTCGGCGCGGTACAGCCCAGCGAGCGAGCGCTTGTCGTCGACGACCTTGTCGCCACCGGCGGCACGCTCTGTGCCGCCATTGTCTTGCTTGAGCGTGCTGGTGCAGAAGTGGTGGAGTGTGCATGTGTGATTGAGCTCCCGGAACTGAAGGGTCGTGAGAGGCTCAATGGGAAGCCACTGTACGTTCTGGTGGGGTCTCACTCCTAGCTTAGCTACATATATACCACTCTAGCTGCAGAATTTGATTCTTTTTCTTGGTGCATTCCACTATTCTGTCCATGTGTAGTTTAATTTTGTGTCTGCTTAAAATTCAGCACTCAGTGTGTAAGTGTATGACTCTAATGGATGGCAACTTTGCTGATCGCGGTGTGGGTGTAGTAACATCTTTCTTCCGTGGATTCGTTTTTTTTATTTCAATCGCTTTAGGTGTGTCCTTTCCATGCTTCAAAAAAAAAA ]
[+] EMBL BI811746 [ GTCGAAGCTAGAGGGTTTTATTTTTCGGTCCTCCCATAGCGCTCGCTATTGGTGC AAATTTATCCCACCTAAGAAAACCTAAC AACTT CAGGTGAGGTGATGTCACAAGGAGTACGAGCTGGAGTATGGCGCCGACTGCTTGGAAATGCACGTCGGC CGGTACAGCCCAGCGAGCGAGCGCTCGTCGTCGACGACCTCGTCGCCACCGGCGGCACGCTCTGTGCC CCATCGTCTTGCTTGAGCGTGCTGGTGCAGAA TGGTGGAGTGTGCATGTGTGATTGAGCTCCCGGAACTGAAGGGTCGTGAGAGGCTCAATGGGAAGCC CTGTACGTTCTGGTGGAGTCTCACTCCTAGCTTAGCTACATATATACCACTCTAGCTGCAGAATTTGATTCTTCTTCTTGGTGCATTCCACTATTCTGTCCATGTGTAGTTTAATTTTGTGTCTGCTTAAAATTCAGCACTCAGTGTGTAAGTGTATGACTCTAATGGATGGC ACTCTGCTGATCGCGGTGTGGGTGTAGTAACATCTTTCTTCCGTGGATTCGTTTTTTTTAaaaaaa ]
consensusID : consensus_10636#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 695 fasta sequence
[GAGCAATGGCAGTGTCTGAGGAGAAGAAGGAGATGCAAGACCCCAGGACACAGGCCATAGCATCCACCATNAGAGTTGTGCCCAACTTCCCTAAGCCAGGAATAATGTTCCAAGATATCACGACCCTACTTCTAAATCCCCCTGTGTTCAAGGACACCATCGACTTGTTCGTTGAACGGTACACTGGCAAAGGCATTTCCGTTGTTGCTGGGTGATAGGTGGCAATCTAAAGAGGAGGAATTCAATCCATTGGAAAACATTCCTATGAAATTAAAGTTTTCAGATGTAGCATTGCTTCAAAGTAATTTCATAGGATATAAAATTCCTCCATGATTTGGAGAAATTGTAGCATAATTAAGGTCTAACATAATGTTCACAAATACCTTTGATTAAAATTCATAGGCACCTTCTTAATTTTCTTTCTCCCTAATAAATCTAGATACATACTTTTAAATTTATTGTAATTTTCTTATCAGGTTCTCCCTCTGTCCCAAAATATTTTGAAAATTGGGATGGATGGGATGTATTCTAGTACTACAGATCTGGTCATACTTGTCTAGATTTATAGTACTAGGATACGTCATATCCAACCAAAATATTTTATATTTAGGGACAGAGAGAGTATCAAACAACTACTTTGTGCAATTCCAACACTGCTCCTGTGATTTTCCTATTTCTAAAAAAAAAAAAAAAAA]
[-] EMBL CA759597 [GAGCAATGGCAGTGTCTGAGGAGAAGAAGGAGATGCAAGACCCCAGGACACAGGCCATAGCATCCACCATNAGAGTTGTGCCCAACTTCCCTAAGCCAGGAATAATGTTCCAAGATATCACGACCCTACTTCTAAATCCCCCTGTGTTCAAGGACACCATCGACTTGTTCGTTGAACGGTACACTGGCAAAGGCATTTCCGTTGTTGCTGGGTGATAGGTGGCAATCTAAAGAGGAGGAATTCAATCCATTGGAAAACATTCCTATGAAATTAAAGTTTTCAGATGTAGCATTGCTTCAAAGTAATTTCATAGGATATAAAATTCCTCCATGATTTGGAGAAATTGTAGCATAATTAAGGTCTAACATAATGTTCACAAATACCTTTGATTAAAATTCATAGGCACCTTCTTAATTTTCTTTCTCCCTAATAAATCTAGATACATACTTTTAAATTTATTGTAATTTTCTTATCAGGTTCTCCCTCTGTCCCAAAATATTTTGAAAATTGGGATGGATGGGATGTATTCTAGTACTACAGATCTGGTCATACTTGTCTAGATTTATAGTACTAGGATACGTCATATCCAACCAAAATATTTTATATTTAGGGACAGAGAGAGTATCAAACAACTACTTTGTGCAATTCCAACACTGCTCCTGTGATTTTCCTATTTCTAAAAAAAAAAAAAAAAA]
consensusID : consensus_10636#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 657 fasta sequence
[TCTGACCCTAAGAAGGAGATGCAAGACCCCAGGACACAGGCCATAGCATCCACCATTAGAGTTGTGCCCAACTTCCCTATCCCAGGAATAATGTTCCAAGATATCACGACCCTACTTCTAAATCCCCCTGTGTTCAAGGACACCATCGACTTGTTCGTTGAACGGTACACTGGCAAAGGCATCTCCGTTGTTGCTGGTAACATATAATTGTTTTGTTTTTTATCTCAAAAAATTGAAAAAATCAAGATTTATTTGAACTTGTGCGCTTTGTATATTCAAGTACTCCATCCGTCCCTTAATTAATATAAGGGATTTTGATATTTTGCTTGCACTGTTTTAATCACTCGTCTTATTAAAAAAAAATTGTGCAAATATAAAAACGAAAAGTTGTGCTTAAAGTACTTTGAGTAATAAAGTAAGTCACAAATAAAATAAATAATAGTTTTAATTTTTTAATAAGACGAATGTTCAAACAGTACAAAGTAAAATGTCAAAATCTCTTATATTAAGGGACGGAGGGAGTAGTAACTAATCTGATCTTTATCTCAAAAAAATATCAGATCTTATCACATCCATTGAAATATATAATTCATTTCTTTAATACTAAGTCAGAGTTATTATTTATGAAAATCCCAATATAGTCAATTAAAAGCGTGA]
[+] EMBL CB635801 [TCTGACCCTAAGAAGGAGATGCAAGACCCCAGGACACAGGCCATAGCATCCACCATTAGAGTTGTGCCCAACTTCCCTATCCCAGGAATAATGTTCCAAGATATCACGACCCTACTTCTAAATCCCCCTGTGTTCAAGGACACCATCGACTTGTTCGTTGAACGGTACACTGGCAAAGGCATCTCCGTTGTTGCTGGTAACATATAATTGTTTTGTTTTTTATCTCAAAAAATTGAAAAAATCAAGATTTATTTGAACTTGTGCGCTTTGTATATTCAAGTACTCCATCCGTCCCTTAATTAATATAAGGGATTTTGATATTTTGCTTGCACTGTTTTAATCACTCGTCTTATTAAAAAAAAATTGTGCAAATATAAAAACGAAAAGTTGTGCTTAAAGTACTTTGAGTAATAAAGTAAGTCACAAATAAAATAAATAATAGTTTTAATTTTTTAATAAGACGAATGTTCAAACAGTACAAAGTAAAATGTCAAAATCTCTTATATTAAGGGACGGAGGGAGTAGTAACTAATCTGATCTTTATCTCAAAAAAATATCAGATCTTATCACATCCATTGAAATATATAATTCATTTCTTTAATACTAAGTCAGAGTTATTATTTATGAAAATCCCAATATAGTCAATTAAAAGCGTGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10636#0 TCTCTCTCTCTCCCAATTATATTTGTAGAGAGAGGGAAGAAAAGAAGAGAGGGGAGGAGC 60
consensus_10636#1 --------------------------------------------------------GAGC 4
consensus_10636#2 ------------------------------------------------------------
consensus_10636#0 AATGGCAGGGTCTGAGGAGAAGAAGGAGATGCAAGACCCCAGGACACAGGCCATAGCATC 120
consensus_10636#1 AATGGCAGTGTCTGAGGAGAAGAAGGAGATGCAAGACCCCAGGACACAGGCCATAGCATC 64
consensus_10636#2 ----------TCTGACCCTAAGAAGGAGATGCAAGACCCCAGGACACAGGCCATAGCATC 50
***** *****************************************
consensus_10636#0 CACCATTAGAGTTGTGCCCAACTTCCCTAAGCCAGGAATAATGTTCCAAGATATCACGAC 180
consensus_10636#1 CACCATNAGAGTTGTGCCCAACTTCCCTAAGCCAGGAATAATGTTCCAAGATATCACGAC 124
consensus_10636#2 CACCATTAGAGTTGTGCCCAACTTCCCTATCCCAGGAATAATGTTCCAAGATATCACGAC 110
****** ********************** *****************************
consensus_10636#0 CCTACTTCTAAATCCCCCTGTGTTCAAGGACACCATCGACTTGTTCGTTGAACGGTACAC 240
consensus_10636#1 CCTACTTCTAAATCCCCCTGTGTTCAAGGACACCATCGACTTGTTCGTTGAACGGTACAC 184
consensus_10636#2 CCTACTTCTAAATCCCCCTGTGTTCAAGGACACCATCGACTTGTTCGTTGAACGGTACAC 170
************************************************************
consensus_10636#0 TGGCAAAGGCATCTCCGTTGTTGCTGGG------GTCG-AAGCTAGAGGGTTTATTTTCG 293
consensus_10636#1 TGGCAAAGGCATTTCCGTTGTTGCTGGGTGATAGGTGGCAATCTAAAGAGGAGGAATTCA 244
consensus_10636#2 TGGCAAAGGCATCTCCGTTGTTGCTGGT---------AACATATAATTGTTTTGTTTTTT 221
************ ************** * ** **
consensus_10636#0 GTCCTCCCATAGCGCTCGCTATTGGTGCAAAATTTATCCCACTAAGAAAACCTAACAAAC 353
consensus_10636#1 ATCCATTGGAAAACATTCCTATGAAATTAAAGTTTTC----------AGATGTAGCATTG 294
consensus_10636#2 ATCTC----AAAAAATTG--AAAAAATCAAGATTTATTT--------GAACTTGTGCGCT 267
** * * * ** *** * *
consensus_10636#0 TTCCAGGTGAGGTGATGTCAAAGGAGTACGAGCTGGAGTATGGCGCCGACTGCTTGGAAA 413
consensus_10636#1 CTTCA----AAGTAATTTCATAGGATATAAAATTCCTCCATGATTTGGAGAAATTGTAGC 350
consensus_10636#2 TTGTATATTCAAGTACTCCATCCGTCCCTTAATTAATATAAGGGATTTTGATATTTTGCT 327
* * * ** * * * * * **
consensus_10636#0 TGCACGTCGGCGCGGTACAGCCCGGCGAGCGAGCACTCGTCGTCGACGACCTCGTCGCCA 473
consensus_10636#1 ATAATTAAGGTCTAACATAAT---GTTCACAAATACCTTTGATTAA--AATTCATAGGCA 405
consensus_10636#2 TGCACTGTTTTAATCACTCGTCTTATTAAAAAAAAATTGTG--CAA--ATATAAAAACGA 383
* * * * * * * *
consensus_10636#0 CCGGCGGCACGCTCTGTGCCGCCATCGTCTTGCTTGA-GCGTGCTGGTGCAGAAGTGGTG 532
consensus_10636#1 CCTTCTTAATTTTCTTTCTCCCTAATAAAT--CTAGATACATACT--TTTAAATTTATTG 461
consensus_10636#2 AAAGTTGTGCTTAAAGTACTTTGAGTAATA----AAGTAAGTCACAAATAAAATAAATAA 439
* * * * *
consensus_10636#0 GAGTGTGCATGTGTGATTGAGCTCCCGGAACTGAAGGGTCGTGAGAGGCTCAATGGGAAG 592
consensus_10636#1 TAATTTTCTTATCAGGTTCT-CCCTCTGTCCCAAAATATTTTGAAAATTGGGATGGATGG 520
consensus_10636#2 TAGTTTTAATTTTTTAATAAGACGAATGTTCAAACAG----TACAAAGTAAAATGTCAAA 495
* * * * * * * * * * * ***
consensus_10636#0 CCACTGTACGTTCTGGTGGAGTCTCACTCCTAGCTTAGCT-ACATATATACCACTCTAGC 651
consensus_10636#1 GATGTATTC-TAGTACTACAGATCTGGTCATA-CTTGTCT-AGATTTATAGTACT----- 572
consensus_10636#2 ATCTCTTATATTAAGGGACGGAGGGAGTAGTAACTAATCTGATCTTTATCTCAAAAAAAT 555
* * * * ** ** ** * * *** *
consensus_10636#0 TGCAGAATTTAATTCTTCTTCTTGGTGCATTCCACTATTCTGTCCATGTGTAGT-TTAAT 710
consensus_10636#1 ---AGGATACGTCATATCCAACCAAAATATTTTATATTTAGGGACAGAGAGAGTATCAAA 629
consensus_10636#2 ATCAGATCTTATCACATCCA-TTGAAATATATAATTCATTTCTTTAATACTAAGTCAGAG 614
** ** ** * * * * *
consensus_10636#0 TTTGTGTCTGCTTAAAATTCAGCACTCAGTGTGTAAGTGTACAACT-CTAATGGATGGCA 769
consensus_10636#1 CAACTACTTTGTGCAATTCCAACACTGCTCCTGTGATTTTCCTATTTCTAAAAAAAAAAA 689
consensus_10636#2 TTATTATTTATGAAAATCCCAATA-TAGTCAATTAAAAGCGTGA---------------- 657
* * ** ** * * * * *
consensus_10636#0 ACTCTGCTGATCGCGGTGTGGGTGTAGTAACATCTTTCTTCCGTGGATTCGTTTTTTTTA 829
consensus_10636#1 AAAAAA------------------------------------------------------ 695
consensus_10636#2 ------------------------------------------------------------
consensus_10636#0 TTTGAATCGCTTTAGGTGTGTCCTTTCCAAAAAAAAAAAAAAAAGG 875
consensus_10636#1 ----------------------------------------------
consensus_10636#2 ----------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||