These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10646#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 755 fasta sequence [AGCCATTCGGCGTTCTTTTTTCNTCTTGCCATTAATTANTTATTAACCCGGCTAAGGAAATAAATAAAGTTTAGTAGCACTATATATGTAGGAGTANATATAGCTAGGAGATAGAGAGTCCAGCGTTAAATAAACTGAGGAGAGCTTGGATTTCTCATCTCCATTATCTTGCATTCTTGTTCTTGGTTTGCATCTCTTCTTGCTCTTTGGAGGATTTACTACTATTGAGTAGTAGTGATCATGAGCTACCAAGGT-CCTCCTCCCGGCACTG-CAGCGTACCCGCCACCGGGGACGGGGTACCCACCGCCGGCGTACGGCGCGCCGCCGCCAGTCGCCGCCGACTACGGCGGGTATCAGCAGCAGCAGCCGCCGCCGCCGCCGCAGGACTCGCAGAGCCGCGGCGACGGCTTCTTGAAAGGATGTTGTGCTGCTCT---CTGCTGCTGCTGCCTGCTCGACATGTGCTTCTGATGAGAAGATGGCATCAAGGATGATGTGATACTCTACTTATAGAGCAGCTTGTGATCGTCTTTTCACATCATTTGTGCTGTGTCATGATCGAGATTTTTTAAGTATGTGGTGAGATGTGTGCATCTAGTATTATGTAGTTACTGTTCTTGGATCATTTGGATTTCATGTGTTGTCAAATTCAAAAGTGGATCCA-TTTTGTATCATTCATCGTAATCTGGGACACTTCTGTTTATCAATGATTTCGATTTTAGTACTATACGAAT-CACCCTAAATTTTATAAAAAAAAA] [+] EMBL AU085753 [AGCCATTCGGCGTTCTTTTTTCNTCTTGCCATTAATTANTTATTAACCCGGCTAAGGAAATAAATAAAGTTTAGTAGCACTATATATGTAGGAGTANATATAGCTAGGAGATAGAGAGTCCAGCGTTAAATAAACTGAGGAGAGCTTGGATTTCTCATCTCCATTATCTTGCATTCTTGTTCTTGGTTTGCATCTCTTCTTGCTCTTTGGAGGATTTACTACTATTGAGTAGTAGTGATCATGAGCTACCAAGGTCCCTCCTCCCGGCACTGCCAGCGTACCCGCCACCGGGGACGGGGTACCCACCGCCGGCGTACGGCGCGCCGCCGCCAGTCGCCGCCGACTACGGCGGGTATCAGCAGCAGCAGCCGCCGCCGCCGCCGCAGGACTCGCAGAGCCGCGGCGACGGCTTCTTGAAAGGATGTTGTGCTGCTCT CTGCTGCTGCTNCCTGCTCGACATGTGCTTCTGATGAGAAGATGGCATCAAGGATGATGTGATACTCTACTTATAGAGCAGCTTGTGATCGTCTTTTCACATCATTTGTGCTGTGTCATGATCGAGATTTTTTAAGTATGTGGTGAGATGTGTGCATCTAGTATTATGTAGTTACTGTTCTTGGATCATTTGGATTTCATGTGTTGTCAAAAAAAAAAaaaaaaaa ] [+] EMBL AK101227 [ CCAGCGTTAAATAAACTGAGGAGAGCTTGGATTTCTCATCTCCATTATCTTGCATTCTTGTTCTTGGTTTGCATCTCTTCTTGCTCTTTGGAGGATTTACTACTATTGAGTAGTAGTGATCATGAGCTACCAAGGT CCTCCTCCCGGCACTG CAGCGTACCCGCCACCGGGGACGGGGTACCCACCGCCGGCGTACGGCGCGCCGCCGCCAGTCGCCGCCGACTACGGCGGGTATCAGCAGCAGCAGCCGCCGCCGCCGCCGCAGGACTCGCAGAGCCGCGGCGACGGCTTCTTGAAAGGATGTTGTGCTGCTCTCTGCTGCTGCTGCTGCCTGCTCGACATGTGCTTCTGATGAGAAGATGGCATCAAGGATGATGTGATACTCTACTTATTGAGCAGCTTGTGATCGTCTTTTCACATCATTTGTGCTGTGTCATGATCGAGATTTTTTAAGTATGTGGTGAGATGTGTGCATCTAGTATTATGTAGTTACTGTTCTTGGATCATTTGGATTTCATGTGTTGTCAAATTCAAAAGTGGATCCA TTTTGTATCATTCATCGTAATCTGGGACACTTCTGTTTATCAATGATTTCGA ] [+] EMBL AK063824 [ GAGGAGAGCTTGGATTTCTCATCTCCATTATCTTGCATTCTTGTTCTTGGTTTGCATCTCTTCTTGCTCTTTGGAGGATTTACTACTATTGAGTAGTAGTGATCATGAGCTACCAAGGT CCTCCTCCCGGCACTG CAGCGTACCCGCCACCGGGGACGGGGTACCCACCGCCGGCGTACGGCGCGCCGCCGCCAGTCGCCGCCGACTACGGCGGGTATCAGCAGCAGCAGCCGCCGCCGCCGCCGCAGGACTCGCAGAGCCGCGGCGACGGCTTCTTGAAAGGATGTTGTGCTGCTCT CTGCTGCTGCTGCCTGCTCGACATGTGCTTCTGATGAGAAGATGGCATCAAGGATGATGTGATACTCTACTTATAGAGCAGCTTGTGATCGTCTTTTCACATCATTTGTGCTGTGTCATGATCGAGATTTTTTAAGTATGTGGTGAGATGTGTGCATCTAGTATTATGTAGTTACTGTTCTTGGATCATTTGGATTTCATGTGTTGTCAAATTCAAAAGTGGATCCA TTTTGTATCATTCATCGTAATCTGGGACACTTCTGTTTATCAATGATTTCGATTTTAGTACTATACGAAT CACCCTAAATTTTAT ] [+] EMBL CA755679 [ TCTCATCTCCATTATCTTGCATTCTTGTTCTTGGTTTGCATCTCTTCTTGCTCTTTGGAGGATTTACTACTATTGAGTAGTAGTGATCATGAGCTACCAAGGT CCTCCTCCCGGCACTG CAGCGTACCCGCCACCGGGGACGGGGTACCCACCGCCGGCGTACGGCGCGCCGCCGCCAGTCGCCGCCGACTACGGCGGGTATCAGCAGCAGCAGCCGCCGCCGCCGCCGCAGGACTCGCAGAGCCGCGGCGACGGCTTCTTGAAAGGATGTTGTGCTGCTCT CTGCTGCTGCTGCCTGCTCGACATGTGCTTCTGATGAGAAGATGGCATCAAGGATGATGTGATACTCTACTTATAGAGCAGCTTGTGATCGTCTTTTCACATCATTTGTGCTGTGTCATGATCGAGATTTTTTAAGTATGTGGTGAGATGTGTGCATCTAGTATTATGTAGTTACTGTTCTTGGATCATTTGGATTTCATGTGTTGTCAAATTCAAAAGTGGATCCATTTTTGTATCATTCATCGTAATCTGGGACACTTCTGTTTATCAATGATTTCGATTTTAGTACTATCCGAATCCCCCCTAAAAAAAAAAAAAAAAAA] [+] EMBL OSC2991 [ ATCTCCATTATCTTGCATTCTTGTTCTTGGTTTGCATCTCTTCTTGCTCTTTGGAGGATTTACTACTATTGAGTAGTAGTGATCATGAGCTACCAAGGT CCTCCTCCCGGCACTG CAGCGTACCCGCCACCGGGGACGGGGTACCCACCGCCGGCGTACGG GCGCCGCCGCCAGTCGCCGCCGACTACGGGGGTTATCAGCAGCAGCAGCCGCCGCCGCCGCCGCAGGACTCGCAGAGCCGCGGCGACGGCTTCTTGAAAGGATGTTGTGCTGCTCT CTGCTGCTGCTGCCTGCTCGANATGTGCTTCTGATGAGAAGATGGCATCAAGGATGATGTGATACTCTACTTATAGAGCAGNTTGTGATCGTCTTTTCACATCATTTGTGCTGTGTCATGATCG GATTTTT ] [+] EMBL AU098326 [ TCTCCATTATCTTGCATTCTTGTTCTTGGTTTGCATCTCTTCTTGCTCTTTGGAGGATTTACTACTATTGAGTAGTAGTGATCATGAGCTACCAAGGT CCTCCTCCCGGCACTG CAGCGTACCCGCCACCGGGGACGGGGTACCCACCGCCGGCGTACGGCGCGCCGCCGCCAGTCGCCGCCGACTACGGCGGGTATCAGCAGCAGCAGCCGCCGCCGCCGCCGCAGGACTCGCAGAGCCGCGGCGACGGCTTCTTGAAAGGATGTTGTGCTGCTCT CTGCTGCTGCTGCCTGCTCGACATGTGCTTCTGATGAGAAGATGGCATCAAGGATGATGTGATACTCTACTTATAGAGCAGCTTGTGATCGTCTTTTCACATCATTTGTGCTGTGTCATGATCGAGATTTTTTAAGTATGTGGTGAGATGTGTGCATCTAGTATTATGTAGTTACTGTTCTTGGATCATTTGGATTTCATGTGTTGTCAAATTCAAAAGTGGATCCA TTTTGTATCAaaaaaaaa ] consensusID : consensus_10646#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 427 fasta sequence [AGCCATTCGGGTNTCTTTTTCTTCTTGTCATTAATTAATTATTAACGCGGCTAAGGAAATAAATAAAGTTTAGTAGCACTATATATGTAGGAGTATATATAGCTAGGAGATAGAGAGTCCAGCGTTAAATAAACTGAGGAGAGCTTGGATTTCTCATCTCCATTATCTTGCATTCTTGTTCTTGGTTTGCATCTCTTCTTGCTCTTTGGAGGATTTACTACTATTGAGTAGTAGTGATCATGAGCTACCAAGGTCCTCCTCCCGGCACTGCAGCGTACCCGCCACCGGGGACGGGGTACCACCGCCGGCGTACGNCGGCCGNCCCAAGTTCCGCCGCCCGACTANGGGTTAATTCAAGCAGCAGCAGCCGCCGCCGCCGCCGAAGACTTNGAAGACCGCGGAACCGTTTTCTTTTAAAAGGATGTTT] [+] EMBL C27599 [AGCCATTCGGGTNTCTTTTTCTTCTTGTCATTAATTAATTATTAACGCGGCTAAGGAAATAAATAAAGTTTAGTAGCACTATATATGTAGGAGTATATATAGCTAGGAGATAGAGAGTCCAGCGTTAAATAAACTGAGGAGAGCTTGGATTTCTCATCTCCATTATCTTGCATTCTTGTTCTTGGTTTGCATCTCTTCTTGCTCTTTGGAGGATTTACTACTATTGAGTAGTAGTGATCATGAGCTACCAAGGTCCTCCTCCCGGCACTGCAGCGTACCCGCCACCGGGGACGGGGTACCACCGCCGGCGTACGNCGGCCGNCCCAAGTTCCGCCGCCCGACTANGGGTTAATTCAAGCAGCAGCAGCCGCCGCCGCCGCCGAAGACTTNGAAGACCGCGGAACCGTTTTCTTTTAAAAGGATGTTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10646#0 AGCCATTCGGCGTTCTTTTTTCNTCTTGCCATTAATTANTTATTAACCCGGCTAAGGAAA 60 consensus_10646#1 AGCCATTCGG-GTNTCTTTTTCTTCTTGTCATTAATTAATTATTAACGCGGCTAAGGAAA 59 ********** ** ****** ***** ********* ******** ************ consensus_10646#0 TAAATAAAGTTTAGTAGCACTATATATGTAGGAGTANATATAGCTAGGAGATAGAGAGTC 120 consensus_10646#1 TAAATAAAGTTTAGTAGCACTATATATGTAGGAGTATATATAGCTAGGAGATAGAGAGTC 119 ************************************ *********************** consensus_10646#0 CAGCGTTAAATAAACTGAGGAGAGCTTGGATTTCTCATCTCCATTATCTTGCATTCTTGT 180 consensus_10646#1 CAGCGTTAAATAAACTGAGGAGAGCTTGGATTTCTCATCTCCATTATCTTGCATTCTTGT 179 ************************************************************ consensus_10646#0 TCTTGGTTTGCATCTCTTCTTGCTCTTTGGAGGATTTACTACTATTGAGTAGTAGTGATC 240 consensus_10646#1 TCTTGGTTTGCATCTCTTCTTGCTCTTTGGAGGATTTACTACTATTGAGTAGTAGTGATC 239 ************************************************************ consensus_10646#0 ATGAGCTACCAAGGTCCTCCTCCCGGCACTGCAGCGTACCCGCCACCGGGGACGGGGTAC 300 consensus_10646#1 ATGAGCTACCAAGGTCCTCCTCCCGGCACTGCAGCGTACCCGCCACCGGGGACGGGGTAC 299 ************************************************************ consensus_10646#0 CCACCGCCGGCGTACGGCGCGCCGCCGCCAGT--CGCCGCC-GACTACGG-CGGGTATCA 356 consensus_10646#1 C-ACCGCCGGCGTACGNCG-GCCGNCCCAAGTTCCGCCGCCCGACTANGGGTTAATTCAA 357 * ************** ** **** * * *** ******* ***** ** * * consensus_10646#0 GCAGCAGCAGCCGCCGCCGCCGCCGCAGGACTCGCAGAGCCGCGGCGACGGCTTCTT--G 414 consensus_10646#1 GCAGCAGCAGCCGCCGCCGCCGCCG-AAGACTTNGAAGACCGCGGAACCGTTTTCTTTTA 416 ************************* * **** * ****** ** ***** consensus_10646#0 AAAGGATGTTGTGCTGCTCTCTGCTGCTGCTGCCTGCTCGACATGTGCTTCTGATGAGAA 474 consensus_10646#1 AAAGGATGTTT------------------------------------------------- 427 ********** consensus_10646#0 GATGGCATCAAGGATGATGTGATACTCTACTTATAGAGCAGCTTGTGATCGTCTTTTCAC 534 consensus_10646#1 ------------------------------------------------------------ consensus_10646#0 ATCATTTGTGCTGTGTCATGATCGAGATTTTTTAAGTATGTGGTGAGATGTGTGCATCTA 594 consensus_10646#1 ------------------------------------------------------------ consensus_10646#0 GTATTATGTAGTTACTGTTCTTGGATCATTTGGATTTCATGTGTTGTCAAATTCAAAAGT 654 consensus_10646#1 ------------------------------------------------------------ consensus_10646#0 GGATCCATTTTGTATCATTCATCGTAATCTGGGACACTTCTGTTTATCAATGATTTCGAT 714 consensus_10646#1 ------------------------------------------------------------ consensus_10646#0 TTTAGTACTATACGAATCACCCTAAATTTTATAAAAAAAAA 755 consensus_10646#1 ----------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||