These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10651#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 552 fasta sequence [CTAGCCTCCCTTTCGCCTACCACGAAATTCACTGGGTTTCGACTTCGTCTCCTCATCGTCGAAACGGCCTTTCACTCCAATTGGTTATTTTTCTGAGGCCGTCGATTCCGCTTTAAGATTTGTGCTGAGATATTTTGCTACCGGATCTAAACCCTCTTTTCACAAGCTAGCCACATCATCATATGTTTATGGAACAAGGTTTCGGAACAAGGTTTTAGCCATGAGGATCCATTGCAGTCTCTGCCAAACTGGCTTCCCGACGGGGATGAAAAGAAATAAGAGTTCGAGTAGGCC-GTAGTGGTTATCTTATTATCCGTTGATTGGCTTATCGCAGACAAATTTTTAATTTTAAATATTACTTTTGAGTTAATTTTTGAGAATTTGTATTGCTGTTTGTATTTCAATCTTGTCTTTTAGACTACCGAGGATATCCTCAATGTATATGTAACAATAAGCAATAGTGGTAGGGCCTAGTGCAGGAAGCACTAACTATGGTAAACTTCACAATGGTAAAAGGTTATTAGATGGTGGGTCCCAAAAAAAACATAAAAA] [+] EMBL CF279060 [CTAGCCTCCCTTTCGCCTACCACGAAATTCACTGGGTTTCGACTTCGTCTCCTCATCGTCGAAACGGCCTTTCACTCCAATTGGTTATTTTTCTGAGGCCGTCGATTCCGCTTTAAGATTTGTGCTGAGATATTTTGCTACCGGATCTAAACCCTCTTTTCACAAGCTAGCCACATCATCATATGTTTATGGAACAAGGTTTCGGAACAAGGTTTTAGCCATGAGGATCCATTGCAGTCTCTGCCAAACTGGCTTCCCGACGGGGATGAAAAGAAATAAGAGTTCGAGTAGGCC GTAGTGGTTATCTTATTATCCGTTGATTGGCTTATCGCAGACAATTTTTTAATTTTAAATATTACTTTTGAGTTAATTTTTGAGAA TTG ATTGCTGTTTGTATTTCAATCTTGTCTTTTAGACTACCGAGGATATCCTCAATGTATATGTAACAATAAGCAATAGTGGTAGGGCCTAGTGCAGGAAGCACTAACTATGGTAAACTTCACAATGGTAAAAGGTTATTAGATGGTGGGTCCCAAAAAA ] [-] EMBL CF279061 [ CTTTAAGATTTGTGCTGAGATATTTTGCTACCGGATCTAAACCCTCTTTTCACAAGCTAGCCACATCATCATATGTTTATGGAACAAGGTTTCGGAACAAGGTTTTAGCCATGAGGATCCATTGCAGTCTCTGCCAAACTGGCTTCCCGACGGGGATGAAAAGAAATAAGAGTTCGAGTAGGCC GTAGTGGTTATCTTATTATCCGTTGATTGGCTTATCGCAGACAAAAATTTAATTTTAAATATTACTTTTGAGTTAATTTTTGAGAATTTGTATTGCTGTTTGTATTTCAATCTTGTCTTTTAGACTACCGAGGATATCCTCAATGTATATGTAACAATAAGCAATAGTGGTAGGGCCTAGTGCAGGAAGCACTAACTATGGTAAACT ] [+] EMBL AU165037 [ agaggaggcAGTTCGAGTAGGCCAATTGTGGTCATCTTATTATCCGTTGGTGGGCTTAGATCAGACAAATTTTTAATTTTAAATATTACTTTTGAGTTAATTTTTGAGAATTTGTATTGCTGTTTGTATTTCAATCTTGTCTTTTAGACTACCGAGGATATCCTCAATGTATATGTAACAATAAGCAATAGTGGTAGGGCCTAGTGCAGGAAGCACTAACTATGGTAAACTTCACAATGGTAAAAGATTATTAGAT GTGGGTCCCATGTCAAACATAAAAA] consensusID : consensus_10651#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 428 fasta sequence [CTCCCTTTCGCCTA-CACG-AAATT-ACTGGGTTTCGACTTCGTCTCCTCATCGTCGAAACGGCCTTTCACTCCAATTGGTTATTTTTCTGAGGAACAAGGTTTCGGAACAAGGTTTTAGCCATGAGGATCCATTGCAGTCTCTGCCAAACTGGCTTCCCGACGGGGATGAAAAGAAATAAGAGTTCGAGTAGGCCGTAGTGGTTATCTTATTATCCGTTGATTGGCTTATCGCAGACAATTTTTTAATTTTAAATATTACTTTTGAGTTAATTTTTGAGAATTTG-ATTGCTGTTTGTATTTCAATCTTGTCTTTTAGACTACCGAGGATATCCTCAATGTATATGTAACAATAAGCAATAGTGGTAGGGCCTAGTGCAGGAAGCACTAACTATGGTAAACTTCACAATGGTAAAAGATTATTAGAAAAAA] [+] EMBL CF334569 [CTCCCTTTCGCCTA CACG AAATT ACTGGGTTTCGACTTCGTCTCCTCATCGTCGAAACGGCCTTTCACTCCAATTGGTTATTTTTCTGAGGAACAAGGTTTCGGAACAAGGTTTTAGCCATGAGGATCCATTGCAGTCTCTGCCAAACTGGCTTCCCGACGGGGATGAAAAGAAATAAGAGTTCGAGTAGGCCGTAGTGGTTATCTTATTATCCGTTGATTGGCTTATCGCAGACAATTTTTTAATTTTAAATATTACTTTTGAGTTAATTTTTGAGAATTTG ATTGCTGTTTGTATTTCAATCTTGTCTTTTAGACTACCGAGGATATCCTCAATGTATATGTAACAATAAGCAATAGTGGTAGGGCCTAGTGCAGGAAGCACTAACTATGGTAAACTTCACAATGGTAAAAGATTATTAGAAAAA ] [-] EMBL CF334570 [ CCTACCACGAAAATTCACTGGGTTTCGACTTCGTCTCCTCATCGTCGAAACGGCCTTTCACTCCAATTGGTTATTTTTCTGAGGAACAAGGTTTCGGAACAAGGTTTTAGCCATGAGGATCCATTGCAGTCTCTGCCAAACTGGCTTCCCGACGGGGATGAAAAGAAATAAGAGTTCGAGTAGGCCGTAGTGGTTATCTTATTATCCGTTGATTGGCTTATCGCAGACAATTTTTTAATTTTAAATATTACTTTTGAGTTAATTTTTGAGAATTTGTATTGCTGTTTGTATTTCAATCTTGTCTTTTAGACTACCGAGGATATCCTCAATGTATATGTAACAATAAGCAATAGTGGTAGGGCCTAGTGCAGGAAGCACTAACTATGGTAAACTTCACAATGGTAAAAGATTATTAGAAAAAA] consensusID : consensus_10651#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 328 fasta sequence [CTCCCTTTCGCCTACCACGAAATTCACTGGGTTTCGACTTCGTCTCCTCATCGTCGAAACGGCCTTTCACTCCAATTGGTTATTTTTCTGAGTATTCTTTTTCAGGAACAAGGTTTCGGAACAAGGTTTTAGCCATGAGGATCCATTGCAGTCTCTGCCAAACTGGCTTCCCGACGGGGATGAAAAGAAATAAGAGTTCGAGTAGGCCGTAGTGGTTATCTTATTATCCGTTGATTGGCTTATCGCAGACAATTTTTTAATTTTAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCACTGTCATGCCG] [+] EMBL CF337999 [CTCCCTTTCGCCTACCACGAAATTCACTGGGTTTCGACTTCGTCTCCTCATCGTCGAAACGGCCTTTCACTCCAATTGGTTATTTTTCTGAGTATTCTTTTTCAGGAACAAGGTTTCGGAACAAGGTTTTAGCCATGAGGATCCATTGCAGTCTCTGCCAAACTGGCTTCCCGACGGGGATGAAAAGAAATAAGAGTTCGAGTAGGCCGTAGTGGTTATCTTATTATCCGTTGATTGGCTTATCGCAGACAATTTTTTAATTTTAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCACTGTCATGCCG] [-] EMBL CF337998 [ TCCCTTTCGCCTACCACGAAATTCACTGGGTTTGGACTTGGTTTCCTCATCGTCGAAACGGCCTTTCACTCCAATTGGTTATTTTTTTGAGTATTTTTTTTCAGGAACAAGGTTTTGGAACAAGGTTTTAGCCATGAGGATCCATTGCAGTTTTTGCCAAACTGGTTTCCCGACGGGGATGAAAAAAAATAAGAGTTCGAGTAGGCCGTAGTGGTTATTTTATTATCCGTTGATTGGCTTATCGCAGCCAATTTTTTAATTTTTAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10651#0 CTAGCCTCCCTTTCGCCTACCACGAAATTCACTGGGTTTCGACTTCGTCTCCTCATCGTC 60 consensus_10651#1 -----CTCCCTTTCGCCTAC-ACGAAATT-ACTGGGTTTCGACTTCGTCTCCTCATCGTC 53 consensus_10651#2 -----CTCCCTTTCGCCTACCACGAAATTCACTGGGTTTCGACTTCGTCTCCTCATCGTC 55 *************** ******** ****************************** consensus_10651#0 GAAACGGCCTTTCACTCCAATTGGTTATTTTTCTGAGGCCGTCGATTCCGCTTTAAGATT 120 consensus_10651#1 GAAACGGCCTTTCACTCCAATTGGTTATTTTTCTGAGG---------------------- 91 consensus_10651#2 GAAACGGCCTTTCACTCCAATTGGTTATTTTTCTGAGTAT-------------------- 95 ************************************* consensus_10651#0 TGTGCTGAGATATTTTGCTACCGGATCTAAACCCTCTTTTCACAAGCTAGCCACATCATC 180 consensus_10651#1 ------------------------------------------------------------ consensus_10651#2 ------------------------------------------------------------ consensus_10651#0 ATATGTTTATGGAACAAGGTTTCGGAACAAGGTTTTAGCCATGAGGATCCATTGCAGTCT 240 consensus_10651#1 ------------AACAAGGTTTCGGAACAAGGTTTTAGCCATGAGGATCCATTGCAGTCT 139 consensus_10651#2 -TCTTTTTCAGGAACAAGGTTTCGGAACAAGGTTTTAGCCATGAGGATCCATTGCAGTCT 154 ************************************************ consensus_10651#0 CTGCCAAACTGGCTTCCCGACGGGGATGAAAAGAAATAAGAGTTCGAGTAGGCCGTAGTG 300 consensus_10651#1 CTGCCAAACTGGCTTCCCGACGGGGATGAAAAGAAATAAGAGTTCGAGTAGGCCGTAGTG 199 consensus_10651#2 CTGCCAAACTGGCTTCCCGACGGGGATGAAAAGAAATAAGAGTTCGAGTAGGCCGTAGTG 214 ************************************************************ consensus_10651#0 GTTATCTTATTATCCGTTGATTGGCTTATCGCAGACAAATTTTTAATTTTAAATATTACT 360 consensus_10651#1 GTTATCTTATTATCCGTTGATTGGCTTATCGCAGACAATTTTTTAATTTTAAATATTACT 259 consensus_10651#2 GTTATCTTATTATCCGTTGATTGGCTTATCGCAGACAATTTTTTAATTTTAAATAAAAAA 274 ************************************** **************** * consensus_10651#0 TTTGAGTTAATTTTTGAGAATTTGTATTGCTGTTTGTATTTCAATCTTGTCTTTTAGACT 420 consensus_10651#1 TTTGAGTTAATTTTTGAGAATTTG-ATTGCTGTTTGTATTTCAATCTTGTCTTTTAGACT 318 consensus_10651#2 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCACTGTCATGCCG------ 328 * ** * ** * * ** * * * consensus_10651#0 ACCGAGGATATCCTCAATGTATATGTAACAATAAGCAATAGTGGTAGGGCCTAGTGCAGG 480 consensus_10651#1 ACCGAGGATATCCTCAATGTATATGTAACAATAAGCAATAGTGGTAGGGCCTAGTGCAGG 378 consensus_10651#2 ------------------------------------------------------------ consensus_10651#0 AAGCACTAACTATGGTAAACTTCACAATGGTAAAAGGTTATTAGATGGTGGGTCCCAAAA 540 consensus_10651#1 AAGCACTAACTATGGTAAACTTCACAATGGTAAAAGATTATTAGAAAAAA---------- 428 consensus_10651#2 ------------------------------------------------------------ consensus_10651#0 AAAACATAAAAA 552 consensus_10651#1 ------------ consensus_10651#2 ------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||