These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10685#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1070 fasta sequence [CCACGCCACGCCGCTCCGCCTCGCCTCCTCCTATCTCTCGCCAAGCTCTTCCTCTTCCTCTTCCTCTTCCTCCTCCTCGCCGCGTGCCGAGAAGATGGGGAAGCGGTGGATCCCTCTCGAGGCCAACCCCGACGTCATGAACCAGTTCATGTGGGGGCTGGGAGTCGCCGAGGGGGAGGCGCAGTTCTGCGACGTCTACGGCCTCGACGACGAGCTGCTCGCCATGGTGCCCCAGCCCGTGCTCGCCGTCCTCTTCCTCTACCCGCTCACTTCCCTGGACGACGACGAGGAGGAATCAGGCGCTGCTGCCACTTCCACGGCTGGGGACAAGGATTTGAGCAAGAGGGTATACTTTACAAAGCAGACTGTTGGCAACGCATGCGGAACAGTTGGTGTTATCCATGCAATAGGGAATGCTGCATCCAAACTCAAGCTGGTTGAGGGATCCTATTTTGATAGATTTTATAAACAAACTGTTGATATGGATCCAGTCCAGCGTGCTGCCTTTCTTGAGGAGGATGATGAGATGGAGGATGCTCAT-TCCGTTGCTGCTTCGGCTGGCGACACTGATGCTAATGTTGAGGTGAACGAGCACTTTGTATGTTTCTCTTGTGTTGATGGTGAACTTTATGAGCTTGAT-GGACGAAAATCGCAACCAATATGTCATGGCCCTTCATCACCAGATACTTTGTTACAGGATGCTGCAAAAGTCATCAAAGCCAGAATTGCGTCCAACCCTGACTCAATGAACTTCAACGTCATGGCTCTTTCGAAAGTTGTGTAAGATAAATGAGCGTTAGACCTTTTTCATTTCCATAGGCATACTACCGAAGGGGGAAAAATGAGGAACTACAGTTGAATAAAAGTAGTTTGCTTGCTCTTTGCAGGGGTTTTAGATCATAGACCAATGTGTTTGGATGATGTATTCACG-TTTTGTCAATCGAGA-GGTTATCACA-GATTTAAAAACTT-CCTG-TTTTGGTTTTGAATGGAGTACTTAGTTACTAGAGCGATTTATACATGATTTCCTTGTCGTTTTTATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AK066320 [CCACGCCACGCCGCTCCGCCTCGCCTCCTCCTATCTCTCGCCAAGCTCTTCCTCTTCCTCTTCCTCTTCCTCCTCCTCGCCGCGTGCCGAGAAGATGGGGAAGCGGTGGATCCCTCTCGAGGCCAACCCCGACGTCATGAACCAGTTCATGTGGGGGCTGGGAGTCGCCGAGGGGGAGGCGCAGTTCTGCGACGTCTACGGCCTCGACGACGAGCTGCTCGCCATGGTGCCCCAGCCCGTGCTCGCCGTCCTCTTCCTCTACCCGCTCACTTCCCTGGACGACGACGAGGAGGAATCAGGCGCTGCTGCCACTTCCACGGCTGGGGACAAGGATTTGAGCAAGAGGGTATACTTTACAAAGCAGACTGTTGGCAACGCATGCGGAACAGTTGGTGTTATCCATGCAATAGGGAATGCTGCATCCAAACTCAAGCTGGTTGAGGGATACTATTTTGATAGATTTTATAAACAAACTGTTGATATGGATCCAGTCCAGCGTGCTGCCTTTCTTGAGGAGGATGATGAGATGGAGGATGCTCAT TCCGTTGCTGCTTCGGCTGGCGACACTGATGCTAATGTTGAGGTGAACGAGCACTTTGTATGTTTCTCTTGTGTTGATGGTGAACTTTATGAGCTTGAT GGACGAAAATCGCAACCAATATGTCATGGCCCTTCATCACCAGATACTTTGTTACAGGATGCTGCAAAAGTCATCAAAGCCAGAATTGCGTCCAACCCTGACTCAATGAACTTCAACGTCATGGCTCTTTCGAAAGTTGTGTAAGATAAATGAGCGTTAGACCTTTTTCATTTCCATAGGCATACTACCGAAGGGGGAAAAATGAGGAACTACAGTTGAATAAAAGTAGTTTGCTTGCTCTTTGCAGGGGTTTTAGATCATAGACCAATGTGTTTGGATGATGTATTCACG TTTTGTCAATCGAGA GGTTATCACA GA ] [+] EMBL CF318780 [ TCCGCCTCGCCTCCTCCTATCTCTCGCCAAGCTCTTCCTCTTCCTCTTCCTCCTCCTCCTCCTCGCCGCGTGCCGAGAAGATGGGGAAGCGGTGGATCCCTCTCGAGGCCAACCCCGACGTCATGAACCAGTTCATGTGGGGGCTGGGAGTCGCCGAGGGGGAGGCGCAGTTCTGCGACGTCTACGGCCTCGACGACGAGCTGCTCGCCATGGTGCCCCAGCCCGTGCTCGCCGTCCTCTTCCTCTACCCGCTCACTTCCCTGGACGACGACGAGGAGGAATCAGGCGCTGCTGCCACTTCCACGGCTGGGGACAAGGATTTGAGCAAGAGGGTATACTTTACAAAGCAGACTGTTGGCAACGCATGCGGAACAGTTGGTGTTATCCATGCAATAGGGAATGCTGCATCCAAACTCAAGCTGGTTGAGGGATCCTATTTTGATAGATTTTATAAACAAACTGTTGATATGGATCCAGTCCAGCGTGCTGCCTTTCTTGAGGAGGATGATGAGATGGAGGATGCTCAT TCCGTTGCTGCTTCGGCTGGCGACACTGATGCTAATGTT ] [-] EMBL CF318781 [ GTATACTTTACAAAGCAGACTGTTGGCAACGCATGCGGAACAGTTGGTGTTATCCATGCAATAGGGAATGCTGCATCCAAACTCAAGCTGGTTGAGGGATCCTATTTTGATAGATTTTATAAACAAACTGTTGATATGGATCCAGTCCAGCGTGCTGCCTTTCTTGAGGAGGATGATGAGATGGAGGATGCTCAT TCCGTTGCTGCTTCGGCTGGCGACACTGATGCTAATGTTGAGGTGAACGAGCACTTTGTATGTTTCTCTTGTGTTGATGGTGAACTTTATGAGCTTGAT GGACGAAAATCGCAACCAATATGTCATGGCCCTTCATCACCAGATACTTTGTTACAGGATGCTGCAAAAGTCATCAAAGCCAGAATTGCGTCCAACCCTGACTCAATGAACTTCAACGTCATGGCTCTTTCGAAAGTTGTGTAAGATAAATGAGCGTTAGACCTTTTTCATTTCCATAGGCATACTACCGAAGGGGGAAAAATGAGGAACTACAGTTGAATAAAAGTAGTTTGCTTGCTCTTTGCAGGGGTTTTAGATCATAGACCAATGTGTTTGGATGATGTATTCACG TTTTGTCAATCGAGA GGTTATCACA GATTTAAAAAa ] [+] EMBL BI797080 [ AAC ACCTGTTGATATGGATCCAGTCCAGCGTGCTGCCTTTCTTGAGGAGG TGATGAGATGGAGGATGCTCATGTCCGTTGCTGCTTCGGCTGGCGACACTGAT CTAATGTTGAGGTGAACGAGCACTTTGTATGTTTCTCTTGTGTTGATGGTGAACTTTATGAGCTTGAT GGACGAAAATCGCAACCAATATGTCAT GCCCTTCATCACCAGATACTTTGTTACAGGATGCTGC AAAGTCATCAAAGCCAGA TGCGTCCAACCCTGACTCAATGAACTTCAACGTCATGGCTCTTTCGAAAGTTGTGTAAGATAAATGAGCGTTAGACCTTTTTCATTCCCATAGGCATACTACCGAATTGGGAAAAATGAGGAACTACAGTTGAATAAAAGTAG TTGCTTGCTC TTCCA GGGTTTTAGATCATAG CCCATG GTTGGGATGATGTATTCAC CCTTCCCAATCGAGA GGTTATCACA GATTTAAAAA ] [+] EMBL AU058175 [ CAT TCCGTTGCTGCTTCGGCTGGCGACACTGATGCTAATGTTGAGGTGAACGAGCACTTTGTATGTTTCTCTTGTGTTGATGGTGAACTTTATGAGCTTGAT GGACGAAAATCGCAACCAATATGTCATGGCCCTTCATCACCAGATACTTTGTTACAGGATGCTGCAAAAGTCATCAAAGCCAGAATTGCGTCCAACCCTGACTCAATGAACTTCAACGTCATGGCTCTTTCGAAAGTTGTGTAAGATAAATGAGCGTTAGACCTTTTTCATTTCCATAGGCATACTACCG AGGGGGGAAAATGAGG ACTACAGTTGAAT AAAGTAG TTGCTTGCTCTTTGCAGGGG TTTAGATCATAGNC ATGTGGTTNGATGATGTATcncg ] [+] EMBL AU078232 [ TTTATGAGCTTGATGGGACGAAAATCGCAACCAATATGTCATGGCCCTTCATCACCAGATACTTTGTTACAGGATGCTGCAAAAGTCATCAAAGCCAGAATTGCGTCCAACCCTGACTCAATGAACTTCAACGTCATGGCTCTTTCGAAAGTTGTGTAAGATAAATGAGCGTTAGNCCTTTTTCATTTCCATAGGCATACTACCGAAGGGGGAAAAATGAGGAACTACAGTTGAATAAAAGTAGTTTGCTTGCTCTTTGCAGGGGTTTTAGATCATAGACCAATGTGTTTGGATGATGTATTCACG TTTTGTCAATCGAGA GGTTATCACA GATTTAAAATCTT CCTG TTTTGGTTTTGAATGGAGTACTTAGTTACTAGAGCGATTTATACATGATTTCCTTGTCGTTTTTATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL OS1321719 [ ATGAGCTTGAT GGACGAAAATCGCAACCAATATGTCATGGCCCTTCATCACCAGATACTTTGTTACAGGATGCTGCAAAAGTCATCAAAGCCAGAATTGCGTCCAACCCTGACTCAATGAACTTCAACGTCATGGCTCTTTCGAAAGTTGTGTAAGATAAATGAGCGTTAGACCTTTTTCATTTCCATAGGCATACTACCGAAGGGNGAAAAATGAGGAACTACAGTTGAATAAAAGTAGTTTGCTTGCTCTTTGCAGGGGTTTTAGATCATAGACCAATGTGTTTGGATGATGTATTCACGTTTTTGTCAATCGAGAGGGTTATCACAGGTTTTAAAATCTTNCCTGTTTTTGGTTTTtg ] [+] EMBL CA765629 [ AGGAACNACAGTTGAATAAAAGTAGTTTGCTTGCTCTTTGCAGGGGTTTTAGATCCTAGACCAATGTGTTTGGATGATGTATTCACG TTTTGTCAATCGAGA GGTTAT ] clustalw multiple alignements is not computed in this case |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||