These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10706#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1836 fasta sequence [CCCTTCCCGCTTCCCTCGTCAACCGAATCAACGCCTCCGCCTCCCATCCCTCGCCGCCGACGAGCTCTCCCCTCTCCTCCCCCCCTCCCCACCTCGCCGTCGCGGATCGCCCCGGGCCGGCCCTGACCGCTCGATCGCCCGCCGCGCGCCGCCCACCCCCACCCCCCGGGATGGTTCACAGGGCGGCGTCTCCTGCTCCCGCGGCGGCGGCGGTGGCGGAGGAGGAGGCGTGAGCCGAGGGGGAACTGGAGCTCGAGCGAGATGGATGCCGCCACGCGCCCCGCCGTCGTCATCGACAACGGCACAGGGTATAGCAAACTTGGATTCTCTGGTAACTCTGAGCCATGTTTCACCATCCCTACTGTAGTAGCTGTGAATGAGTCTTTTCTGGACCAGTCAGAGATGTGCAGTAGTGCAAATTGGATAGCACAGTACAATGCAGGTGTCATGGCTGACCTGGATTTTTTTATTGGTGATGAGGCTCTATCACTATTTAAATCTAGTGGGCTGTACACTAGAAAACACCCAATTAATCATGGTCAGGTTGATGACTGGGATACAATGGAAAGATTTTGGCAACAGTGCATTTTCAACTATCTACGGTGCAATCCTGAAGAGCACTACTTCCTTCTTACCGATAGTCCTGTCAGTACACCTGAAAGTCGTGAATGTGCAGGGGAAATTATGTTTGAGACTTTCAATGTTCCTGGACTATATATTTCTGTTCAATCTGTCCTCAGTCTTTCTGCTGGATATGCCTTTCTGAAAAGTATTTCTGATGAGGACTCGGTTTCTGTGGTGTAGTAGTTGATATTGGGGATGGAGCTCCACATGTGGTGCCGGTTGTAAACGGCTACGTAATTGGGAGTAGCATCAAGTCTTTTCCATTTTCAGGAAGTGACGTTACACAGTTTGTTTTGCAGCTTTTACAGGAAAGAGGTGAACTTATTGCACCTGAGGATTCTTTGGATATAGCTCGTAGGGTGAAAGAAATGTATTGCTACACTTCTTCAGACATTGTCAAGGAGTTCAAGAAGCATGACAAAAAGCCTGATAAGTATATCAAACACTGGTCTGCTATTAAGCCCAAGACTGGAGTCCCATACACAATTGATATTGGATATGAGCGTTTTCTTGGACCAGAGATCTTCTTCCATCCCGAGATTTACTCTGCCGACTTCTCCACTCCTCTACCTGAACTAATTGATAGCTGTGTTCAATCTGCGCCAATTGACACAAGGAGAGATCTGTATAAGAATATAGTATTGTCTGGTGGATCTACAATGTTTAAGGACTTCCACAAGAGACTTCAGAATGACATAAAGAAGATAGTAGATGAGCGTGTTGCCGCAACTAATGCCCGTCACCATGTGGAGGTGAAACCTGTTGAAGTCAATGTGGTCGCCCATCCTATACAGAGTTATGCAGCTTGGTTCGGGGGTTCAGTAGCTGCTTCTAACCCTGAATTTTATGAGAGTTGCCACACAAAGGAAGAATACGAGGAGCATGGAGCAAGCATCTGCCGGACCAGCACCGTTTTCAAAGGGATGTACTGAATTTTTTCCACCTGTCCAAATCTCTCAGTAGGAGTTCGTTTAGGTTTCACCAGATAGAAATATGTAGTCAAAATTGATTCTTTTTGGCCCATCCAAAGCATCGCCGGGGCCATCCTGATTAGATTGGTAGCTCAGGTTGTTGTTAGCTCTCTCTGTGTTCATGCTGTGTATAGCCAGCAGCTGCTGTTCCTCTGTTTCTGTTCGAGGTGCATGTTTGTAGCCAAAACCTTGGGCAGCGAGGCCTTTTCCCACTTTCTACATACTCCTATTTCACAACATT] [+] EMBL AK103383 [CCCTTCCCGCTTCCCTCGTCAACCGAATCAACGCCTCCGCCTCCCATCCCTCGCCGCCGACGAGCTCTCCCCTCTCCTCCCCCCCTCCCCACCTCGCCGTCGCGGATCGCCCCGGGCCGGCCCTGACCGCTCGATCGCCCGCCGCGCGCCGCCCACCCCCACCCCCCGGGATGGTTCACAGGGCGGCGTCTCCTGCTCCCGCGGCGGCGGCGGTGGCGGAGGAGGAGGCGTGAGCCGAGGGGGAACTGGAGCTCGAGCGAGATGGATGCCGCCACGCGCCCCGCCGTCGTCATCGACAACGGCACAGGGTATAGCAAACTTGGATTCTCTGGTAACTCTGAGCCATGTTTCACCATCCCTACTGTAGTAGCTGTGAATGAGTCTTTTCTGGACCAGTCAGAGATGTGCAGTAGTGCAAATTGGATAGCACAGTACAATGCAGGTGTCATGGCTGACCTGGATTTTTTTATTGGTGATGAGGCTCTATCACTATTTAAATCTAGTGGGCTGTACACTAGAAAACACCCAATTAATCATGGTCAGGTTGATGACTGGGATACAATGGAAAGATTTTGGCAACAGTGCATTTTCAACTATCTACGGTGCAATCCTGAAGAGCACTACTTCCTTCTTACCGATAGTCCTGTCAGTACACCTGAAAGTCGTGAATGTGCAGGGGAAATTATGTTTGAGACTTTCAATGTTCCTGGACTATATATTTCTGTTCAATCTGTCCTCAGTCTTTCTGCTGGATATGCCTTTCTGAAAAGTATTTCTGATGAGGACTCGGTTTCTGTGGTGTAGTAGTTGATATTGGGGATGGAGCTCCACATGTGGTGCCGGTTGTAAACGGCTACGTAATTGGGAGTAGCATCAAGTCTTTTCCATTTTCAGGAAGTGACGTTACACAGTTTGTTTTGCAGCTTTTACAGGAAAGAGGTGAACTTATTGCACCTGAGGATTCTTTGGATATAGCTCGTAGGGTGAAAGAAATGTATTGCTACACTTCTTCAGACATTGTCAAGGAGTTCAAGAAGCATGACAAAAAGCCTGATAAGTATATCAAACACTGGTCTGCTATTAAGCCCAAGACTGGAGTCCCATACACAATTGATATTGGATATGAGCGTTTTCTTGGACCAGAGATCTTCTTCCATCCCGAGATTTACTCTGCCGACTTCTCCACTCCTCTACCTGAACTAATTGATAGCTGTGTTCAATCTGCGCCAATTGACACAAGGAGAGATCTGTATAAGAATATAGTATTGTCTGGTGGATCTACAATGTTTAAGGACTTCCACAAGAGACTTCAGAATGACATAAAGAAGATAGTAGATGAGCGTGTTGCCGCAACTAATGCCCGTCACCATGTGGAGGTGAAACCTGTTGAAGTCAATGTGGTCGCCCATCCTATACAGAGTTATGCAGCTTGGTTCGGGGGTTCAGTAGCTGCTTCTAACCCTGAATTTTATGAGAGTTGCCACACAAAGGAAGAATACGAGGAGCATGGAGCAAGCATCTGCCGGACCAGCACCGTTTTCAAAGGGATGTACTGAATTTTTTCCACCTGTCCAAATCTCTCAGTAGGAGTTCGTTTAGGTTTCACCAGATAGAAATATGTAGTCAAAATTGATTCTTTTTGGCCCATCCAAAGCATCGCCGGGGCCATCCTGATTAGATTGGTAGCTCAGGTTGTTGTTAGCTCTCTCTGTGTTCATGCTGTGTATAGCCAGCAGCTGCTGTTCCTCTGTTTCTGTTCGAGGTGCATGTTTGTAGCCAAAACCTTGGGCAGCGAGGCCTTTTCCCACTTTCTACATACTCCTATTTCACAACATT] consensusID : consensus_10706#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1823 fasta sequence [CCGCCCTCATGGCGCCCAGCAACCGCCTCGCCGGAGCTGCGGCGGCGGCGGCGGCGGCGCCTCCTCCTCCTCCTCCTCCTCCGCCGCCTCCTCTACCTCCGAGAGGATCTCCCGCGCCGTCGGAGAACCATACAGCGATCTCGGCGCCTCTGCTGCAGCCCGCGGGGGCGGGCGCGGGCGACGCGGCGCCGCTGGCGAAGTGGCTGCGGCGGCTCGAGGCGTTCCTCTCGGCGGCGGGGCTCGCGGCGTCGAGCCCGCTCGGGAAGGCCGGGGCGGCGTCCGCGCTCGCCGTGCTGGGCGTCGCGCTGCCGGCGCTGGCGGTGGCGCTCTCCCCGTGCCGCGGGCGCGGGAGGGGTTGCGACGAGTTCGAGGTGGAGGTGTTCGAGGTGTGCGTGCTTCTGTCGCAGGCGGCGGCCGCGGCCGTCGCGCTCGCGTGCGTGTCGAGGAAGATGGCCATGTACGGCCTCCGCAAGTTCCTCTTCGTCGACCCGGAGCTCGGCATGCGGATCCGCTTCCAGAAGGAGTACGTCGCTAAGATCAAGGATTTCTTCAGCACAATTTTGTGGTGGATATTGCCATGCTTTGTTGTGAAGGTCACACGAGAAATGTTCCGTTTCTCCCATATCTTCCAAGAGTCGACTTGGAGATCATGTGCTGTACTGTTTGCTTCCATCATGTCATGGATGTATCTGACCACAATTATATTAACCTCCTGCATGCTTTTCAACTTGGTTTGCAACCTACAAGTTATTCATTTCGATGACTATGGAAAACTTCTAGAACAAGATTCAGATCCTTTGGTCTATTTAAAAGAGCACCTGCAGCTTCGTCATAATCTCTCCAAAATCAGTCACAGGTTCCGCATGTTCCTTTTGCTGCTCTTCTTTTCTGTTACAGCAAGCCAGTTTGCCATTCTGTTCAAGACAACAGCATATACTGGACCAATCAATTTCACTAATGGTGGTGATATAGCTGTCTCTTCCGTTGTTCAAGTTGTCGGTCTTGTCCTTTGTTTGCATGCAGCTGCTAAAATTTCTCACAGAGCTCAAAACATTGCTTCACTGGCTAGTCGATGGCATGCCTTAGTAACATGCTCTAGTGATTCTACTTATGTAAGCACACCAAACAGTTCTGGGAACCTTGTGCCTTTTCCAGCACATATGTTCTTGAGAGACTTTTCAGAAAGTGATTTGGAGTCTCTGGAGAGTGGCTCAGTACAAGGCAATTCTCATGGCACAGCTCAATTGGCTTCATACATGTCTTCATACCACAAGAGGGAATCACTTGTGCTGTATCTTCTGGGCAACCCAGGTGGCATCACGATATTTGGCTGGATCGTTGATCGGACATTCCTAAATACAATTCTGATGCTCGAATTAACACTTGTGCTCTTCGTGCTTAGCAAGACCGTTGTGGTTCCGGCCAAAACATTAGTTCTTGATTACATCAGGTTTCCATGATGGGGGCTATCACATCTCAAACATCTGAATTTGGTCCGGATCGCTAGATATGGTGAATTGAGGATACACATCAGGCTCCTATTGCCACCATGCCAGAATCCGATCTGGTGGACAGAAAATCTGATCTTCTGAGGATTAAAATCATCTGCTGGATCTGAGAACTACAAGGTTGGTCTCTCTTGAGGATTTCCTGATGAACA-CCCTGTTTTG-CCGCTAATCCA-CGTCATGCCAATTTTCCA-TGAGAAACA-GAGAGAACATCATGTAATTTTGAACAGTTGATCA-CTGAAACTCCA-CTCTAGGCTGTGCGCTGTGCATAGAGCCAGCTTCATCCATGTAAATTGCTGTAGGCTTCTCCTGTCTTTT] [+] EMBL AK120428 [CCGCCCTCATGGCGCCCAGCAACCGCCTCGCCGGAGCTGCGGCGGCGGCGGCGGCGGCGCCTCCTCCTCCTCCTCCTCCTCCGCCGCCTCCTCTACCTCCGAGAGGATCTCCCGCGCCGTCGGAGAACCATACAGCGATCTCGGCGCCTCTGCTGCAGCCCGCGGGGGCGGGCGCGGGCGACGCGGCGCCGCTGGCGAAGTGGCTGCGGCGGCTCGAGGCGTTCCTCTCGGCGGCGGGGCTCGCGGCGTCGAGCCCGCTCGGGAAGGCCGGGGCGGCGTCCGCGCTCGCCGTGCTGGGCGTCGCGCTGCCGGCGCTGGCGGTGGCGCTCTCCCCGTGCCGCGGGCGCGGGAGGGGTTGCGACGAGTTCGAGGTGGAGGTGTTCGAGGTGTGCGTGCTTCTGTCGCAGGCGGCGGCCGCGGCCGTCGCGCTCGCGTGCGTGTCGAGGAAGATGGCCATGTACGGCCTCCGCAAGTTCCTCTTCGTCGACCCGGAGCTCGGCATGCGGATCCGCTTCCAGAAGGAGTACGTCGCTAAGATCAAGGATTTCTTCAGCACAATTTTGTGGTGGATATTGCCATGCTTTGTTGTGAAGGTCACACGAGAAATGTTCCGTTTCTCCCATATCTTCCAAGAGTCGACTTGGAGATCATGTGCTGTACTGTTTGCTTCCATCATGTCATGGATGTATCTGACCACAATTATATTAACCTCCTGCATGCTTTTCAACTTGGTTTGCAACCTACAAGTTATTCATTTCGATGACTATGGAAAACTTCTAGAACAAGATTCAGATCCTTTGGTCTATTTAAAAGAGCACCTGCAGCTTCGTCATAATCTCTCCAAAATCAGTCACAGGTTCCGCATGTTCCTTTTGCTGCTCTTCTTTTCTGTTACAGCAAGCCAGTTTGCCATTCTGTTCAAGACAACAGCATATACTGGACCAATCAATTTCACTAATGGTGGTGATATAGCTGTCTCTTCCGTTGTTCAAGTTGTCGGTCTTGTCCTTTGTTTGCATGCAGCTGCTAAAATTTCTCACAGAGCTCAAAACATTGCTTCACTGGCTAGTCGATGGCATGCCTTAGTAACATGCTCTAGTGATTCTACTTATGTAAGCACACCAAACAGTTCTGGGAACCTTGTGCCTTTTCCAGCACATATGTTCTTGAGAGACTTTTCAGAAAGTGATTTGGAGTCTCTGGAGAGTGGCTCAGTACAAGGCAATTCTCATGGCACAGCTCAATTGGCTTCATACATGTCTTCATACCACAAGAGGGAATCACTTGTGCTGTATCTTCTGGGCAACCCAGGTGGCATCACGATATTTGGCTGGATCGTTGATCGGACATTCCTAAATACAATTCTGATGCTCGAATTAACACTTGTGCTCTTCGTGCTTAGCAAGACCGTTGTGGTTCCGGCCAAAACATTAGTTCTTGATTACATCAGGTTTCCATGATGGGGGCTATCACATCTCAAACATCTGATTTTGGTCCGGATCGCTAGATATGGTGAATTGAGGATACACATCAGGCTCCTATTGCCACCATGCCAGAATCCGATCTGGTGGACAGAAAATCTGATCTTCTGAGGATTAAAATCATCTGCTGGATCTGAGAACTACAAGGTTGGTCTCTCTTGAGGATTTCCTGATGAACA CCCTGTTTTG CCGCTAATCCA CGTCATGCCAATTTTCCA TGAGAAACA GAGAGAACATCATGTAATTTTGAACAGTTGATCA CTGAAACTCCA CTCTAGGCTGTGCGCTGTGCATAGAGCCAGCTTCATCCATGTAAATTGCTGTAGGCTTCTCCTGTCTTTT] [+] EMBL CA765625 [ GGTGGTGATATAGCTGTCTCTTCCGTTGTT AAGTTGTCGGTCTTGTCCTTTGTTTGCATGCAGCTGCTAAAATTTCTCACAGAGCTCAAAACATTGCTTCACTGGCTAGTCGATGGCATGCCTTAGTAACATGCTCTAGTGATTCTACTTATGTAAGCACACCAAACAGTTCTGGGAACCTTGTGCCTTTTCCAGCACATATGTTCTTGAGAGACTTTTCAGAAAGTGATTTGGAATCTCTGGAGAGTGGCTCAGTAGAAGGCAATTCTCATGGCACAGCTCAATTGGCTTCATACATGTCTTCATACCACAAGAGGGAATCACTTGTGCTGTATCTTCTGGGCAACCCAGGTGGCATCACGATATTTGGCTGGATCGTTGATCGGACATTCCTAAATACAATTCTGATGCTCGAATTAACACCTGTGCTCTTCGTGCTTAGCAAGACCGTTGTGGTTCCGGCCAAAACATTAGTTCTTGATTACATCAGGTTTCCATGATGGGGGCTATCACATCTCAAACATCTGAATTTGGTCCGGATCGCTAGATATGGTGAATTGAGGATACACATCAGGCTCCTATTGCCACCATGCCAGAATCCGATCTGGTGGACAGAAAATCTGATCTTCTGAGGATTAAAATCATCTGCTGGATCTGAGAACTACAAGGNTGGTCTCTCTTGAGGATTTCCTGATGAACA CCCTGNTTTG CCGCTAATCCA CGTCATGCCAATTTTNCA TGAGAAACA GAGAGAACATCATGTAATT ] [+] EMBL BM420775 [ GGGCTATCACATCTC AACATCTGAATTTGGTCCGGATCGCTAGATATGGTGAATTGAGGATACACATCAGGCTCCTATTGCCACCATGCCAGAATCCGATCTGGTGGACAGAAAATCTGATCTTCTGAGGATTAAAATCATCTGCTGGATCTGAGAACTACAAGGTTGGTCTCTCTTGAGGATTTCCTGATGAACACCCCTGTTTTGCCCGCTAATCCACCGTCATGCCNATTTTCCACTGAGAAACACGAGAGAACATCATGTAATTTTGAACAGTTGATCANCTGAAACTCCACCTCTAGGCTGTGCGCTGTGCATAGAGCCAGCTTCATCCATGTAAATTGCTGTAGGCTTCTCCTGTCTTT ] consensusID : consensus_10706#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1134 fasta sequence [CCTCGCCGGAGCTGCGGCGGCGGCGGCGGCGGCGCCTCCTCCTCCTCCTCCTCCTCCGCCACCTCCTCTACCTCCGAGAGGATCTCCCGCGCCGTCGGAGAACCATACAGCGATCTCGGCGCCTCTGCTGCAGCCCGCGGGGGCGGGCGCGGGCGACGCGGCGCCGCTGGCGAAGTGGCTGCGGCGGCTCGAGGCGTTCCTCTCGGCGGCGGGGCTCGCGGCGTCGAGCCCGCTCGGGAAGGCCGGGGCGGCGTCCGCGCTCGCCGTGCTGGGCGTCGCGCTGCCGGCGCTGGCGGTGGCGCTCTCCCCGTGCCGCGGGCGCGGGAGGGGTTGCGACGAGTTCGAGGTGGAGGTGTTCGAGGTGTGCGTGCTTCTGTCGCAGGCGGCGGCCGCGGCCGTCGCGCTCGCGTGCGTGTCGAGGAAGATGGCCATGTACGGCCTCCGCAAGTTCCTCTTCGTCGACCCGGAGCTCGGCATGCGGATCCGCTTCCAGAAGGAGTACGTCGCTAAGATCAAGGATTTCTTCAGCACAATTTTGTGGTGGATATTGCCATGCTTTGTTGTGAAGGTCACACGAGAAATGTTCCGTTTCTCCCATATCTTCCAAGAGTCGACTTGGAGATCATGTGCTGTACTGTTTGCTTCCATCATGTCATGGATGTATCTGACCACAATTATATTAACCTCCTGCATGCTTTTCAACTTGGTTTGCAACCTACAAGTTATTCATTTCGATGACTATGGAAAACTTCTAGAACAAGATTCAGATCCTTTGGTCTATTTAAAAGAGCACCTGCAGCTTCGTCATAATCTCTCCAAAATCAGTCACAGGTTCCGCATGTTCCTTTTGCTGCTCTTCTTTTCTGTTACAGCAAGCCAGTTTGCCATTCTGTTCAAGACAACAGCATATACTGGACCAATCAATTTCACTAATGGTGGTGATATAGCTGTCTCTTCCGTTGTTCAAGTTGTCGGTCTTGTCCTTTGTTTGCATGCAGCTGCTAAAATTTCTCACAGAGCTCAAAACATTGCTTCACTGGCTAGTCGATGGCATGCCTTAGTAACATGCTCTNNNGATTCTACTTATGTANNNNNANCAANNNNNNCTGGGAACCTTGTNNNNNNTCCNNNNNN] [+] EMBL CB677511 [CCTCGCCGGAGCTGCGGCGGCGGCGGCGGCGGCGCCTCCTCCTCCTCCTCCTCCTCCGCCACCTCCTCTACCTCCGAGAGGATCTCCCGCGCCGTCGGAGAACCATACAGCGATCTCGGCGCCTCTGCTGCAGCCCGCGGGGGCGGGCGCGGGCGACGCGGCGCCGCTGGCGAAGTGGCTGCGGCGGCTCGAGGCGTTCCTCTCGGCGGCGGGGCTCGCGGCGTCGAGCCCGCTCGGGAAGGCCGGGGCGGCGTCCGCGCTCGCCGTGCTGGGCGTCGCGCTGCCGGCGCTGGCGGTGGCGCTCTCCCCGTGCCGCGGGCGCGGGAGGGGTTGCGACGAGTTCGAGGTGGAGGTGTTCGAGGTGTGCGTGCTTCTGTCGCAGGCGGCGGCCGCGGCCGTCGCGCTCGCGTGCGTGTCGAGGAAGATGGCCATGTACGGCCTCCGCAAGTTCCTCTTCGTCGACCCGGAGCTCGGCATGCGGATCCGCTTCCAGAAGGAGTACGTCGCTAAGATCAAGGATTTCTTCAGCACAATTTTGTGGTGGATATTGCCATGCTTTGTTGTGAAGGTCACACGAGAAATGTTCCGTTTCTCCCATATCTTCCAAGAGTCGACTTGGAGATCATGTGCTGTACTGTTTGCTTCCATCATGTCATGGATGTATCTGACCACAATTATATTAACCTCCTGCATGCTTTTCAACTTGGTTTGCAACCTACAAGTTATTCATTTCGATGACTA ] [+] EMBL CF196988 [ CCATCATGTCATGGATGTATCTGACCACAATTATATTAACCTCCTGCATGCTTTTCAACTTGGTTTGCAACCTACAAGTTATTCATTTCGATGACTATGGAAAACTTCTAGAACAAGATTCAGATCCTTTGGTCTATTTAAAAGAGCACCTGCAGCTTCGTCATAATCTCTCCAAAATCAGTCACAGGTTCCGCATGTTCCTTTTGCTGCTCTTCTTTTCTGTTACAGCAAGCCAGTTTGCCATTCTGTTCAAGACAACAGCATATACTGGACCAATCAATTTCACTAATGGTGGTGATATAGCTGTCTCTTCCGTTGTTCAAGTTGTCGGTCTTGTCCTTTGTTTGCATGCAGCTGCTAAAATTTCTCACAGAGCTCAAAACATTGCTTCACTGGCTAGTCGATGGCATGCCTTAGTAACATGCTCTNNNGATTCTACTTATGTANNNNNANCAANNNNNNCTGGGAACCTTGTNNNNNNTCCNNNNNN] consensusID : consensus_10706#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 767 fasta sequence [TCCTTTTTTTTTTTTTTAGNTGGAAGAGTAATTCTGTTCTCTAGGGCATTCAGTATTAGTGAAAGTCCAGGGGCTTCAACACAAAAAGGACTAATAAGAACTATGGGTCAAATGTAAATTTTGTGTTGATCTGATAAATGCTTCCTCCAGAAGTCATTTTATTGACATTTGGACTCTTCACCTTGAAATGACATTAAAAGGAGAAAAACATGAATTTGATGTAATTTACTAACCTTCTACTAGCGCAAATGCAGATCTTCTTCCATCCCGAGATTTACTCTGCCGACTTCTCCACTCCTCTACCTGAACTAATTGATAGCTGTGTTCAATCTTGTAGTTCTCAGATCCAGCAGATGATTTTAATCCTCAGAAGATCAGATTTTCTGTCCACCAGATCGGATTCTGGCATGGTGGCAATAGGAGCCTGATGTGTATCCTCAATTCACCATATCTAGCGATCCGGACCAAATTCAGATGTTTGAGATGTGATAGCCCCCATCATGGAAACCTGATGTAATCAAGAACTAATGTTTTGGCCGGAACCACAACGGTCTTGCTAAGCACGAAGAGCACAAGTGTTAATTCGAGCATCAGAATTGTATTTAGGAATGTCCGATCAACGATCCAGCCAAATATCGTGATGCCACCTGGGTTGCCCAGAAGATACAGCACAAGTGATTCCCTCTTGTGGTATGAAGACATGTATGAAGCCAATTGAGCTGTGCCATGAGAATTGCCTTGTACTGAGCCACTCTCCAGAGACTCCA] [+] EMBL CB677512 [TCCTTTTTTTTTTTTTTAGNTGGAAGAGTAATTCTGTTCTCTAGGGCATTCAGTATTAGTGAAAGTCCAGGGGCTTCAACACAAAAAGGACTAATAAGAACTATGGGTCAAATGTAAATTTTGTGTTGATCTGATAAATGCTTCCTCCAGAAGTCATTTTATTGACATTTGGACTCTTCACCTTGAAATGACATTAAAAGGAGAAAAACATGAATTTGATGTAATTTACTAACCTTCTACTAGCGCAAATGCAGATCTTCTTCCATCCCGAGATTTACTCTGCCGACTTCTCCACTCCTCTACCTGAACTAATTGATAGCTGTGTTCAATCTTGTAGTTCTCAGATCCAGCAGATGATTTTAATCCTCAGAAGATCAGATTTTCTGTCCACCAGATCGGATTCTGGCATGGTGGCAATAGGAGCCTGATGTGTATCCTCAATTCACCATATCTAGCGATCCGGACCAAATTCAGATGTTTGAGATGTGATAGCCCCCATCATGGAAACCTGATGTAATCAAGAACTAATGTTTTGGCCGGAACCACAACGGTCTTGCTAAGCACGAAGAGCACAAGTGTTAATTCGAGCATCAGAATTGTATTTAGGAATGTCCGATCAACGATCCAGCCAAATATCGTGATGCCACCTGGGTTGCCCAGAAGATACAGCACAAGTGATTCCCTCTTGTGGTATGAAGACATGTATGAAGCCAATTGAGCTGTGCCATGAGAATTGCCTTGTACTGAGCCACTCTCCAGAGACTCCA] consensusID : consensus_10706#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 430 fasta sequence [CCCACTGGATGGGGCCTATCACATCTCAAACCATTCTGAATTTGGTCCCGGATCGCCTAGATATGGTGAATTGAGGATACCACCATCAGGCTCCTATTTGCCACCCANTGGCCAAGAATGCCGGATGCTGGGTGGGGACAGAAAATGCTGGATGCTGTCTGGAGGGATTGAAAATCATGCTGGCTGGGATGCTGAGAACTACACAGGGTTGGGTGCTCTGCTTGGAGGGATGTTCCTGGATGGAACCCCCTGGTGTTTGCGCCGCTAATGCCACGTGCATGCCNATGTGTTGCCATGGAGAAACCACGAGAGAACATGCATGGTGAATTTTGGAACAGTGGGATGCACTGAAACTCCACCTCTAGGCTGTGCGCTGTGCATAGAGCCAGCTTCATCCATGTAAATTGGCTGTAGGCTTCTGCCTGTCTTT] [+] EMBL BM038037 [CCCACTGGATGGGGCCTATCACATCTCAAACCATTCTGAATTTGGTCCCGGATCGCCTAGATATGGTGAATTGAGGATACCACCATCAGGCTCCTATTTGCCACCCANTGGCCAAGAATGCCGGATGCTGGGTGGGGACAGAAAATGCTGGATGCTGTCTGGAGGGATTGAAAATCATGCTGGCTGGGATGCTGAGAACTACACAGGGTTGGGTGCTCTGCTTGGAGGGATGTTCCTGGATGGAACCCCCTGGTGTTTGCGCCGCTAATGCCACGTGCATGCCNATGTGTTGCCATGGAGAAACCACGAGAGAACATGCATGGTGAATTTTGGAACAGTGGGATGCACTGAAACTCCACCTCTAGGCTGTGCGCTGTGCATAGAGCCAGCTTCATCCATGTAAATTGGCTGTAGGCTTCTGCCTGTCTTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10706#1 CCGCCCTCATGGCGCCCAGCAACCGCCTCGCCGGAGCTGCGGCGGCGGCGGCGGCGGCGC 60 consensus_10706#2 -------------------------CCTCGCCGGAGCTGCGGCGGCGGCGGCGGCGGCGC 35 consensus_10706#4 ------------------------------------------------------------ consensus_10706#3 ------------------------------------------------------------ consensus_10706#0 -----------------------CCCTTCCCGCTTCCCTCGTCAACCGAATCAACGCCTC 37 consensus_10706#1 CTCCTCCTCCTCCTCCTCCTCCGCCGCCTCCTCTACCTCCGAGAGGATCTCCCGCGCCGT 120 consensus_10706#2 CTCCTCCTCCTCCTCCTCCTCCGCCACCTCCTCTACCTCCGAGAGGATCTCCCGCGCCGT 95 consensus_10706#4 ------------------------------------------------------------ consensus_10706#3 -TCCTTTTTTTTTTTTTTAGNTGGAAGAGTAATTCTGTTCTCTAGGGCATTCAGTATTAG 59 consensus_10706#0 CGCCTCCCATCCCTCGCCGCCGACGAGCTCTCCCCTCTCCTCCCCCCCTCCCCACCTCGC 97 consensus_10706#1 CGGAGAACCATACAGCGATCTCGGCGCCTCTGCTGCAGCCCGCGGGGGCG-GGCGCGGG- 178 consensus_10706#2 CGGAGAACCATACAGCGATCTCGGCGCCTCTGCTGCAGCCCGCGGGGGCG-GGCGCGGG- 153 consensus_10706#4 ------------------------CCCACTGGATGGGGCCTATCACATCT-CAAACCATT 35 consensus_10706#3 TGAAAGTCCA----GGGGCTTCAACACA---AAAAGGACTAATAAGAACTATGGGTCAAA 112 consensus_10706#0 CGTCGCGGATCGCCCCGGGCCGGCCCTGACCGCTCGATCGCCCGCCGCGCGCCGCCCACC 157 * * consensus_10706#1 CGACGCGGCGCCGCTGGCGAAGTGGCTGCGGCGGCTCGAGGCGTTCCTCTCGGCGGCGGG 238 consensus_10706#2 CGACGCGGCGCCGCTGGCGAAGTGGCTGCGGCGGCTCGAGGCGTTCCTCTCGGCGGCGGG 213 consensus_10706#4 CTGAATTTGGTCCCGGATCGCCTAGATATGGTGAATTGAGGATACCACCATCAGGCTCCT 95 consensus_10706#3 TGTAAATTTTGTGTTGATCTGATAAATGCTTCCTCCAGAAGTCATTTTATTGACATTTGG 172 consensus_10706#0 CCCACCCCCCGGGATGGTTCACAGGGCGGCGTCTCCTGCTCCCGCGGCGGCGGCGGTGGC 217 * * consensus_10706#1 GCTCGCGGCGTCGAGCCCGCTCGGGAAGGCCGGG-GCGGCGTCCGCGCTCGCCGTGCTGG 297 consensus_10706#2 GCTCGCGGCGTCGAGCCCGCTCGGGAAGGCCGGG-GCGGCGTCCGCGCTCGCCGTGCTGG 272 consensus_10706#4 ATTTGC--CACCCAN--TGGCCAAGAATGCCGGATGCTGGGTGGGGACAGAAAATGCTGG 151 consensus_10706#3 ACTCTTCACCTTGAAATGACATTAAAAGGAGAAAAACATGAATTTGATGTAATTTACTA- 231 consensus_10706#0 GGAGGAGGAGGCGTG--AGCCGAGGGGGAACTGGAGCTCGAGCGAGATGGATGCCGCCAC 275 * * consensus_10706#1 GCGTCGCGCTGCCGGCGCTGGCGGTGGCGCTCTCCCCG--TGCCGCGGGCGCGGGAGGGG 355 consensus_10706#2 GCGTCGCGCTGCCGGCGCTGGCGGTGGCGCTCTCCCCG--TGCCGCGGGCGCGGGAGGGG 330 consensus_10706#4 ATGCTGT-CTGGAGGGATTGAAAATCATGCTGGCTGGGA-TGCTGAGAAC-TACACAGGG 208 consensus_10706#3 ACCTTCTACTAGCGCAAATGCAGATCTTCTTCCATCCCG-AGATTTACTC-TGCCGACTT 289 consensus_10706#0 GCGCCCCGCCGTCGTCATCGACAACGGCACAGGGTATAGCAAACTTGGATTCTCTGGTAA 335 * * * consensus_10706#1 TTGCGA----CGAGTTCGAGGTGGAGGT--GTTCGAGGTGTGCGTGCTTCTGTCGCAGGC 409 consensus_10706#2 TTGCGA----CGAGTTCGAGGTGGAGGT--GTTCGAGGTGTGCGTGCTTCTGTCGCAGGC 384 consensus_10706#4 TTG-GG----TGCTCTGCTTGGAGGGAT--GTTCCTGG-ATGGAACCCCCTGGTGTTTGC 260 consensus_10706#3 CTCCAC----TCCTCTACCTGAACTAATT-GATAGCTGTGTTCAATCTTGTAGTTCTCAG 344 consensus_10706#0 CTCTGAGCCATGTTTCACCATCCCTACTGTAGTAGCTGTGAATGAGTCTTTTCTGGACCA 395 * * * * * consensus_10706#1 GGC--GGCCGCGGCCGTCGCGCTCGCGTGCGTGTCGAGGAAGATGGCCATGTACGGCCTC 467 consensus_10706#2 GGC--GGCCGCGGCCGTCGCGCTCGCGTGCGTGTCGAGGAAGATGGCCATGTACGGCCTC 442 consensus_10706#4 GCC--GCTAATGCCACGTGCATGCCNATGTGTTGCCATGGAGA-AACCACG-AGAGAACA 316 consensus_10706#3 ATCCAGCAGATGATTTTAATCCTCAGAAGATCAGATTTTCTGTCCACCAGATCGGATTCT 404 consensus_10706#0 GTC--AGAGATGTGCAGTAGTGCAAATTGGATAGCACAGTACAATGCAGGTGTCATGGCT 453 * * * * consensus_10706#1 CGCAAGTTCCTCTTCGTCGACCCGGAGCTCGGCATGCGGATCCGCTTCCAG-AAGGAGTA 526 consensus_10706#2 CGCAAGTTCCTCTTCGTCGACCCGGAGCTCGGCATGCGGATCCGCTTCCAG-AAGGAGTA 501 consensus_10706#4 TGCATGGTGAATTTTG--GAACAGTGGGATGCACTGAAACTCCACCTCTAG-GCTGTGCG 373 consensus_10706#3 GGCATGGTGGCAATAGGAGCCTGATGTGTATCCTCAATTCACCATATCTAGCGATCCGGA 464 consensus_10706#0 GACCTGGATTTTTTTATTGG-TGATGAGGCTCTATCACTATTTAAATCTAGTGGGCTGTA 512 * * * * ** ** * consensus_10706#1 CGTCGCTAAGA----------TCAAGGATTTCTTCAGCACAATTTTGTGGTGGATATTGC 576 consensus_10706#2 CGTCGCTAAGA----------TCAAGGATTTCTTCAGCACAATTTTGTGGTGGATATTGC 551 consensus_10706#4 CTGTGCATAGA----------GCCAG--CTTCATCCATGTAAATTGGCTGTAGGCTTCTG 421 consensus_10706#3 CCAAATTCAGATGTTTGAGATGTGATAGCCCCCATCATGGAAACCTGATGTAATCAAGAA 524 consensus_10706#0 CACTA-GAAAACACCCAATTAATCATGGTCAGGTTGATG--ACTGGGATACAATGGAAAG 569 * * * * * * consensus_10706#1 CATGCTTTGTTGTGAAGGTCACACGAGAAATGT---TCCGTTTCTCCCATATCTTCCAAG 633 consensus_10706#2 CATGCTTTGTTGTGAAGGTCACACGAGAAATGT---TCCGTTTCTCCCATATCTTCCAAG 608 consensus_10706#4 CCTGTCTTT--------------------------------------------------- 430 consensus_10706#3 CTAATGTTTTGGCCGGAACCACAACGGTCTTGC---TAAGCACGAAGAGCACAAGTGTTA 581 consensus_10706#0 ATTTTGGCAACAGTGCATTTTCAACTATCTACGGTGCAATCCTGAAGAGCACTACTTCCT 629 consensus_10706#1 AGTCGACTTGGAGATCATGTGCTGTACTGTTTGCTTCCATCATGTCATGGATGT-ATCTG 692 consensus_10706#2 AGTCGACTTGGAGATCATGTGCTGTACTGTTTGCTTCCATCATGTCATGGATGT-ATCTG 667 consensus_10706#4 ------------------------------------------------------------ consensus_10706#3 ATTCGAGCATCAGAAT-TGTATTTAGGAATGTCCGATCAACGATCCAGCCAAAT-ATCGT 639 consensus_10706#0 TCTTACCGATAGTCCTGTCAGTACACCTGAAAGTCGTGAATGTGCAGGGGAAATTATGTT 689 consensus_10706#1 ACCACAATTATATTAACCTCCTGCATGCTTTTCAACTTGGTTTGCAACCTACAAGTTATT 752 consensus_10706#2 ACCACAATTATATTAACCTCCTGCATGCTTTTCAACTTGGTTTGCAACCTACAAGTTATT 727 consensus_10706#4 ------------------------------------------------------------ consensus_10706#3 GATGCCACCTGGGTTGCCCAGAAGATACAGCACAAGTGATTCCCTCTTGTGGTATGAAGA 699 consensus_10706#0 TGAGACTTTCAATGTTCCTGGACTATATATTTCTGTTCAATCTGTCCTCAGTCTTTCTGC 749 consensus_10706#1 CATTTCGATGACTATGGAAAACTTCTAGAACAAGATTCAGATCCTTTGGTCTATTTAAAA 812 consensus_10706#2 CATTTCGATGACTATGGAAAACTTCTAGAACAAGATTCAGATCCTTTGGTCTATTTAAAA 787 consensus_10706#4 ------------------------------------------------------------ consensus_10706#3 CATGTATGAAGCCAATTGAGCTGTGCCATGAGAATTGCCTTGTACTGAGCCACTCTCCAG 759 consensus_10706#0 TGGATATGCCTTTCTGAAAAGTATTTCTGATGAGGACTCGGTTTCTGTGGTGTAGTAGTT 809 consensus_10706#1 GAGCACCTGCAGCTTCGTCATAATCTCTCCAAAATCAGTCACAGGTTCCGCATGTTCCTT 872 consensus_10706#2 GAGCACCTGCAGCTTCGTCATAATCTCTCCAAAATCAGTCACAGGTTCCGCATGTTCCTT 847 consensus_10706#4 ------------------------------------------------------------ consensus_10706#3 AGACTCCA---------------------------------------------------- 767 consensus_10706#0 GATATTGGGGATGGAGCTCCACATGTGGTGCCGGTTGTAAACGGCTACGTAATTGGGAGT 869 consensus_10706#1 TTGCTGCTCTTCTTTTCTGTTACAGCAAGCCAGTTTGCCATTCTGTTCAAGACAACAGCA 932 consensus_10706#2 TTGCTGCTCTTCTTTTCTGTTACAGCAAGCCAGTTTGCCATTCTGTTCAAGACAACAGCA 907 consensus_10706#4 ------------------------------------------------------------ consensus_10706#3 ------------------------------------------------------------ consensus_10706#0 AGCATCAAGTCTTTTCCATTTTCAGGAAGTGACGTTACACAGTTTGTTTTGCAGCTTTTA 929 consensus_10706#1 TATACTGGACCAATCAATTTCACTAATGGTGGTGATATAGCTGTCTCTTCCGTTGTTCAA 992 consensus_10706#2 TATACTGGACCAATCAATTTCACTAATGGTGGTGATATAGCTGTCTCTTCCGTTGTTCAA 967 consensus_10706#4 ------------------------------------------------------------ consensus_10706#3 ------------------------------------------------------------ consensus_10706#0 CAGGAAAGAGGTGAACTTATTGCACCTGAGGATTCTTTGGATATAGCTCGTAGGGTGAAA 989 consensus_10706#1 GTTGTCGGTCTTGTCCTTTGTTTGCATGCAGCTGCTAAAATTTCTCACAGAGCTCAAAAC 1052 consensus_10706#2 GTTGTCGGTCTTGTCCTTTGTTTGCATGCAGCTGCTAAAATTTCTCACAGAGCTCAAAAC 1027 consensus_10706#4 ------------------------------------------------------------ consensus_10706#3 ------------------------------------------------------------ consensus_10706#0 GAAATGTATTGCTACACTTCTTCAGACATTGTCAAGGAGTTCAAGAAGCATGACAAAAAG 1049 consensus_10706#1 ATTGCTTCACTGGCTAGTCGATGGCATGCCTTAGTAACATGCTCTAGTGATTCTACTTAT 1112 consensus_10706#2 ATTGCTTCACTGGCTAGTCGATGGCATGCCTTAGTAACATGCTCTNNNGATTCTACTTAT 1087 consensus_10706#4 ------------------------------------------------------------ consensus_10706#3 ------------------------------------------------------------ consensus_10706#0 CCTGATAAGTATATCAAACACTGGTCTGCTATTAAGCCCAAGACTGGAGTCCCATACACA 1109 consensus_10706#1 GTAAGCACACCAAACAGTTCTGGGAACCTTGTGCCTTTTCCAGCACATATGTTCTTGAGA 1172 consensus_10706#2 GTANNNNNANCAANNNNNNCTGGGAACCTTGTNNNNNNTCCNNNNNN------------- 1134 consensus_10706#4 ------------------------------------------------------------ consensus_10706#3 ------------------------------------------------------------ consensus_10706#0 ATTGATATTGGATATGAGCGTTTTCTTGGACCAGAGATCTTCTTCCATCCCGAGATTTAC 1169 consensus_10706#1 GACTTTTCAGAAAGTGATTTGGAGTCTCTGGAGAGTGGCTCAGTACAAGGCAATTCTCAT 1232 consensus_10706#2 ------------------------------------------------------------ consensus_10706#4 ------------------------------------------------------------ consensus_10706#3 ------------------------------------------------------------ consensus_10706#0 TCTGCCGACTTCTCCACTCCTCTACCTGAACTAATTGATAGCTGTGTTCAATCTGCGCCA 1229 consensus_10706#1 GGCACAGCTCAATTGGCTTCATACATGTCTTCATACCACAAGAGGGAATCACTTGTGCTG 1292 consensus_10706#2 ------------------------------------------------------------ consensus_10706#4 ------------------------------------------------------------ consensus_10706#3 ------------------------------------------------------------ consensus_10706#0 ATTGACACAAGGAGAGATCTGTATAAGAATATAGTATTGTCTGGTGGATCTACAATGTTT 1289 consensus_10706#1 TATCTTCTGGGCAACCCAGGTGGCATCACGATATTTGGCTGGATCGTTGATCGGACATTC 1352 consensus_10706#2 ------------------------------------------------------------ consensus_10706#4 ------------------------------------------------------------ consensus_10706#3 ------------------------------------------------------------ consensus_10706#0 AAGGACTTCCACAAGAGACTTCAGAATGACATAAAGAAGATAGTAGATGAGCGTGTTGCC 1349 consensus_10706#1 CTAAATACAATTCTGATGCTCGAATTAACACTTGTGCTCTTCGTGCTTAGCAAGACCGTT 1412 consensus_10706#2 ------------------------------------------------------------ consensus_10706#4 ------------------------------------------------------------ consensus_10706#3 ------------------------------------------------------------ consensus_10706#0 GCAACTAATGCCCGTCACCATGTGGAGGTGAAACCTGTTGAAGTCAATGTGGTCGCCCAT 1409 consensus_10706#1 GTGGTTCCGGCCAAAACATTAGTTCTTGATTACATCAGGTTTCCATGATGGGGGCTATCA 1472 consensus_10706#2 ------------------------------------------------------------ consensus_10706#4 ------------------------------------------------------------ consensus_10706#3 ------------------------------------------------------------ consensus_10706#0 CCTATACAGAGTTATGCAGCTTGGTTCGGGGGTTCAGTAGCTGCTTCTAACCCTGAATTT 1469 consensus_10706#1 CATCTCAAACATCTGAATTTGGTCCGGATCGCTAGATATGGTGAATTGAGGATACACATC 1532 consensus_10706#2 ------------------------------------------------------------ consensus_10706#4 ------------------------------------------------------------ consensus_10706#3 ------------------------------------------------------------ consensus_10706#0 TATGAGAGTTGCCACACAAAGGAAGAATACGAGGAGCATGGAGCAAGCATCTGCCGGACC 1529 consensus_10706#1 AGGCTCCTATTGCCACCATGCCAGAATCCGATCTGGTGGACAGAAAATCTGATCTTCTGA 1592 consensus_10706#2 ------------------------------------------------------------ consensus_10706#4 ------------------------------------------------------------ consensus_10706#3 ------------------------------------------------------------ consensus_10706#0 AGCACCGTTTTCAAAGGGATGTACTGAATTTTTTCCACCTGTCCAAATCTCTCAGTAGGA 1589 consensus_10706#1 GGATTAAAATCATCTGCTGGATCTGAGAACTACAAGGTTGGTCTCTCTTGAGGATTTCCT 1652 consensus_10706#2 ------------------------------------------------------------ consensus_10706#4 ------------------------------------------------------------ consensus_10706#3 ------------------------------------------------------------ consensus_10706#0 GTTCGTTTAGGTTTCACCAGATAGAAATATGTAGTCAAAATTGATTCTTTTTGGCCCATC 1649 consensus_10706#1 GATGAACACCCTGTTTTGCCGCTAATCCACGTCATGCCAATTTTCCATGAGAAACAGAGA 1712 consensus_10706#2 ------------------------------------------------------------ consensus_10706#4 ------------------------------------------------------------ consensus_10706#3 ------------------------------------------------------------ consensus_10706#0 CAAAGCATCGCCGGGGCCATCCTGATTAGATTGGTAGCTCAGGTTGTTGTTAGCTCTCTC 1709 consensus_10706#1 GAACATCATGTAATTTTGAACAGTTGATCACTGAAACTCCACTCTAGGCTGTGCGCTGTG 1772 consensus_10706#2 ------------------------------------------------------------ consensus_10706#4 ------------------------------------------------------------ consensus_10706#3 ------------------------------------------------------------ consensus_10706#0 TGTGTTCATGCTGTGTATAGCCAGCAGCTGCTGTTCCTCTGTTTCTGTTCGAGGTGCATG 1769 consensus_10706#1 CATAGAGCCAGCTTCATCCATGTAAATTGCTGTAGGCTTCTCCTGTCTTTT--------- 1823 consensus_10706#2 ------------------------------------------------------------ consensus_10706#4 ------------------------------------------------------------ consensus_10706#3 ------------------------------------------------------------ consensus_10706#0 TTTGTAGCCAAAACCTTGGGCAGCGAGGCCTTTTCCCACTTTCTACATACTCCTATTTCA 1829 consensus_10706#1 ------- consensus_10706#2 ------- consensus_10706#4 ------- consensus_10706#3 ------- consensus_10706#0 CAACATT 1836 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||