These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1075#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 499 fasta sequence [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAACCCCCTCCCCCCCTGGCAGGGCCCAGGGGGAAATTTTTTAAAACCCGGGGGACATCCCCCTTTAGGGGGGGGTAATTTTGACCTGGGGGAAAAAAGGGCAAAAACTTTTCCCGGGGGAAAATTGTTTCCCCCCCAAAATCCCCCCAAAAATACAACCCGGAACCAAAAAGGGAAAACCCGGGGGGCCCCAAAGGGGGACCCACCCCCCATTAATGGGGGGGCCCCCCCCGCCCCTTTTCCAAGGGGAAAACCTGGGGGCCCCCCTGTTTAAAAAAATCCCCCCCCCCCCGGGGAAAGGGGGTTTGCTTTTGGGGCCCTTTTCCCCTTCCCCGAAAAAAAAATCCTGGGCCTGGGGGGTTCGGGGGGGGGAAGGGGTTTTACCTCCCTAAAAGGGGGGAAACCGGTTTTCCCCAAAATCG] [+] EMBL CF315761 [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAACCCCCTCCCCCCCTGGCAGGGCCCAGGGGGAAATTTTTTAAAACCCGGGGGACATCCCCCTTTAGGGGGGGGTAATTTTGACCTGGGGGAAAAAAGGGCAAAAACTTTTCCCGGGGGAAAATTGTTTCCCCCCCAAAATCCCCCCAAAAATACAACCCGGAACCAAAAAGGGAAAACCCGGGGGGCCCCAAAGGGGGACCCACCCCCCATTAATGGGGGGGCCCCCCCCGCCCCTTTTCCAAGGGGAAAACCTGGGGGCCCCCCTGTTTAAAAAAATCCCCCCCCCCCCGGGGAAAGGGGGTTTGCTTTTGGGGCCCTTTTCCCCTTCCCCGAAAAAAAAATCCTGGGCCTGGGGGGTTCGGGGGGGGGAAGGGGTTTTACCTCCCTAAAAGGGGGGAAACCGGTTTTCCCCAAAATCG] consensusID : consensus_1075#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 376 fasta sequence [CAGTCAGAACTACAGAGGTGGATTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCTTGTTTTCCCTTTCCTTACCAAAGGGCAAATTCCGGGCCTTTAAATTAATTTCCCCTTTTAGGGAGTGGTTTAAAATTTAATTGCCCGTCTTTTAACAACTTCGGAATGGGAAAAACCTTGGCTTTCCCCAATTAAATCCCTTTGAAAAAAATCCCCTTTTCCCCAGTTGGCTTAATACCAAAAAGGCCCCCCCCATTCCCCTTTCCAAAAATTTGCCCACCCTATCCTTCCGGAATTTAAAGGTTAACCCCTTTAAAAAAA] [+] EMBL CF309313 [CAGTCAGAACTACAGAGGTGGATTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCTTGTTTTCCCTTTCCTTACCAAAGGGCAAATTCCGGGCCTTTAAATTAATTTCCCCTTTTAGGGAGTGGTTTAAAATTTAATTGCCCGTCTTTTAACAACTTCGGAATGGGAAAAACCTTGGCTTTCCCCAATTAAATCCCTTTGAAAAAAATCCCCTTTTCCCCAGTTGGCTTAATACCAAAAAGGCCCCCCCCATTCCCCTTTCCAAAAATTTGCCCACCCTATCCTTCCGGAATTTAAAGGTTAACCCCTTTAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1075#0 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 60 consensus_1075#1 ------------------------------------------------------------ consensus_1075#0 TTTTTTTTTTTTTTTTTAAACCCCCTCCCCCCCTGGCAGGGCC-CAGGGGGAAATTTTTT 119 consensus_1075#1 --------------------------------CAGTCAGAACTACAGAGGTGGATTTAAA 28 * * *** * *** ** **** consensus_1075#0 AAAACCCGGGGGACATCCCCCTTTAGGGGGGGGTAATTTTGACCTGGGGGAAAAAAGGGC 179 consensus_1075#1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 88 **** * * * ** * ****** consensus_1075#0 AAAAACTTTTCCCGGGGGAAAATTGTTTCCCCCCCAAAATCCCCCCAAAAATACAACCCG 239 consensus_1075#1 AAAAAAAAAAAAAAAAAAAAAAACCCTTGTTTTCCCTTTCCTTACCAAAGGGCAAATTCC 148 ***** **** ** ** * ***** ** * consensus_1075#0 GAACCAAAAAGGGAAAACCCGGGGGGCCCCAAAGGGGGACCCACCCCCCATTAATGGGGG 299 consensus_1075#1 GGGCCTTTAAATTAATTTCCC----CTTTTAGGGAGTGGTTTAAAAT---TTAATTGCCC 201 * ** ** ** ** * * * * * ***** * consensus_1075#0 GGCCCCCCCCGCCCCTTTTCCAAGGGGAAAACCTGGGGGCCCCCCTGTTTAA-------- 351 consensus_1075#1 G--TCTTTTAACAACTTCGGAATGGGAAAAACCTTGGCTTTCCCCAATTAAATCCCTTTG 259 * * * *** * *** ******* ** **** ** ** consensus_1075#0 --AAAAATCCCCCCCCCCCCGGGGAAAGGGGGTTTGCTTTTGGGGCCCTTTTCCCCTTCC 409 consensus_1075#1 AAAAAAATCCCCTTTTCCCC-----AGTTGGCTTAATACCAAAAAGGCCCCCCCCATTCC 314 ********** **** * ** ** * *** **** consensus_1075#0 CCGAAAAAAAAATCCTGGGCCTGGGGGGTTCGGGGGGGGGAAGGGGTTTTACCTCCCTAA 469 consensus_1075#1 CCTTTCCAAAAATTT---GCCCACCCTATCCTTCCGGAATTTAAAGGTTAACCCCTTTAA 371 ** ****** *** * * ** * ** *** * *** consensus_1075#0 AAGGGGGGAAACCGGTTTTCCCCAAAATCG 499 consensus_1075#1 AAAAA------------------------- 376 ** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||