These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10765#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1219 fasta sequence [CTTCACTCCCACCACTACTACTCCAGCACAAAAAACCTCGTCTCCTCCTCCTCCTCTCTCTCGAGCTCATCTCCATTTTCAAATCTCTCTTTGCTTGCTCGAGGTGAGCCATGGCGGAGCTGCCGCTGGCGGCGGGGCTGCTCGACCTGCGCCCCTGCAAGCTCGCCCCTCCCCCTCCCCCGCCCCTCCCCGTCTCCCCCTCCCCTCGCCACCACCGCCGCCCCCACTCCACCGCCACCGCCTGCCGCGCCGCCCCCGACCTCCACTCCTCCACCGAGCTCGCCGACGGGAGCATCGTCTTCCGCTTCGCGCGCCCCCGGGACGACGACGACGAGGAGCAGCAGCAGCGGCGGGCGGACGCCGTGGCTCCCGAGGCCGCGGCCGTCGTCGAATCAGGGCTCGACGGTGACGCCGCCGCAGCTGCTGAACCTGAGGCCCGGGATGGCGGTGGAGAAGGGGAGGTGACGGCGACGGCGACGGGTTTGGACGCGGAGGAGGTGGTGGCGAGTGGAGGAGCGGAGGCGACGGCGACCTCCGGTTTGGAGGATGCGGGGGAGGAGGCCTCGGATGGCTCCACCGCGCGGGATTCCGACACCGACGTCGACACCGAGTCCAGCGCCTCCACCGCCGCCGACGACGACCAGCCCGCCGAGTTCGCCGTCCCGCCGCCACCGGCGGAAGAAGTTTGTAACAAGGTAGATTGGGAAAAGGACACTTCAGAGGTGAAGAATACTGATAGGATGGTTCCAGTAGCCTCATCAACGCTTGTGTTGGCATCAGGTGCTGCGATCTTGCCTCATCCTTCTAAGGCAGCAACAGGTGGAGAAGATGCATATTTTATTGCGTGTGATGGCTGGTTTGGTGTGGCTGATGGAGTTGGCCAGTGGTCATTTGAAGGTATCAATGCAGGGCTTTATGCAAGGGAGCTAATGGATGGTTGTAAAAAGTTCATTATGGAGAAT-CAAGGCGCTGCAGATATTAAACCCGAACAAGTTCTTTCCAAGGCTGCAGATGAAGCGCACTCTCCTGGTTCTTCCACTGTTTTGGTTGCTCACTTTGATGGCCAGTTCCTCAATGCATCGAATATTGGAGACTCTGGATTTCTGGTGATAAGAAATGGAGAGGTGTACCAAAAATCAAAACCAATGGTTTATGGTTTCAACTTTCCACTGCAAATTGAGAAGGGCGATAATCCCCTGAAACTTGTAC-AGAATTATAC] [+] EMBL AK071987 [CTTCACTCCCACCACTACTACTCCAGCACAAAAAACCTCGTCTCCTCCTCCTCCTCTCTCTCGAGCTCATCTCCATTTTCAAATCTCTCTTTGCTTGCTCGAGGTGAGCCATGGCGGAGCTGCCGCTGGCGGCGGGGCTGCTCGACCTGCGCCCCTGCAAGCTCGCCCCTCCCCCTCCCCCGCCCCTCCCCGTCTCCCCCTCCCCTCGCCACCACCGCCGCCCCCACTCCACCGCCACCGCCTGCCGCGCCGCCCCCGACCTCCACTCCTCCACCGAGCTCGCCGACGGGAGCATCGTCTTCCGCTTCGCGCGCCCCCGGGACGACGACGACGAGGAGCAGCAGCAGCGGCGGGCGGACGCCGTGGCTCCCGGGGCCGCGGCCGTCGTCGAATCAGGGCTCGACGGTGACGCCGCCGCAGCTGCTGAACCTGAGGCCCGGGATGGCGGTGGAGAAGGGGAGGTGACGGCGACGGCGACGGGTTTGGGCGCGGAGGAGGTGGTGGCGAGTGGAGGAGCGGAGGCGACGGCGACCTCCGGTTTGGAGGATGCGGGGGAGGAGGCCTCGGATGGCTCCACCGCGCGGGATTCCGACACCGACGTCGACACCGAGTCCAGCGCCTCCACCGCCGCCGACGACGACCAGCCCGCCGAGTTCGCCGTCCCGCCGCCACCGGCGGAAGAAGTTTGTAACAAGGTAGATTGGGAAAAGGACACTTCAGAGGTGAAGAATACTGATAGGATGGTTCCAGTAGCCTCATCAACGCTTGTGTTGGCATCAGGTGCTGCGATCTTGCCTCATCCTTCTAAGGCAGCAACAGGTGGAGAAGATGCATATTTTATTGCGTGTGATGGCTGGTTTGGTGTGGCTGATGGAGTTGGCCAGTGGTCATTTGAAGGTATCAATGCAGGGCTTTATGCAAGGGAGCTAATGGATGGTTGTAAAAAGTTCATTATGGAGAAT CAAGGCGCTGCAGATATTAAACCCGAACAAGTTCTTTCCAAGGCTGCAGATGAAGCGCACTCTCCTGGTTCTTCCACTGTTTTGGTTGCTCACTTTGATGGCCAGTTCCTCAATGCATCGAATATTGGAGACTCTGGATTTCTGGTGATAAGAAATGGAGAGGTGTACCAAAAATCAAAACCAATGGTTTATGGTTTCAACTTTCCACTGCAAATTGAGAAGGGCGATAATCCCCTGAAACTTGTAC AGAATTATA ] [+] EMBL AU173862 [ CGTCTCCTCCTCCTCCTCTCTCTCGAGCTCATCTCCATTTTCAAATCTCTCTTTGCTTGCTCGAGGTGAGCCATGGCGGAGCTGCCGCTGGCGGCGGGGCTGCTCGACCTGCGCCCCTGCAAGCTCGCCCCTCCCCCTCCCCCGCCCCTCCCCGTCTCCCCCTCCCCTCGCCACCACCGCCGCCCCCACTCCACCGCCACCGCCTGCCGCGCCGCCCCCGACCTCCACTCCTCCACCGAGCTCGCCGACGGGAGCATCGTCTTCCGCTTCGCGCGCCCCCGGGACGACGACGACGAGGAGCAGCAGCAGCGGCGGGCGGACGCCGTGGCTCCCGAGGCCGCGGCCGTCGTCGAATCAGGGCTCGACGGTGACGCCGCCGCAGCTGCTGAACCTGAGGCCCGGGATGGCGGNGGAGAAGGGGAGGTGACGGCGACGGCGACGGGTTTGGA ] [+] EMBL AK100049 [ CGAGCTCATCTCCATTTTCAAATCTCTCTTTGCTTGCTCGAGGTGAGCCATGGCGGAGCTGCCGCTGGCGGCGGGGCTGCTCGACCTGCGCCCCTGCAAGCTCGCCCCTCCCCCTCCCCCGCCCCTCCCCGTCTCCCCCTCCCCTCGCCACCACCGGCGACCCCACTCCACCGCCACCGCCTGCCGCGCCGCCCCCGACCTCCACTCCTCCACCGAGCTCGCCGACGGGAGCATCGTCTTCCGCTTCGCGCGCCCCCGGGACGACGACGACGAGGAGCAGCAGCAGCGGCGGGCGGACGCCGTGGCTCCCGAGGCCGCGGCCGTCGTCGAATCAGGGCTCGACGGTGACGCCGCCGCAGCTGCTGAACCTGAGGCCCGGGATGGCGGTGGAGAAGGGGAGGTGACGGCGACGGCGACGGGCTTGGACGCGGAGGAGGTGGTGGCGAGTGGAGGAGCGGAGGCGACGGCGACCTCCGGTTTGGAGGATGCGGGGGAGGAGGCCTCGGATGGCTCCACCGCGCGGGATTCCGACACCGACGTCGACACCGAGTCCAGCGCCTCCACCGCCGCCGACGACGACCAGCCCGCCGAGTTCGCCGTCCCGCCGCCACCGGCGGAAGAAGTTTGTAACAAGGTAGATTGGGAAAAGGACACTTCAGAGGTGAAGAATACTGATAGGATGGTTCCAGTAGCCTCATCAACGCTTGTGTTGGCATCAGGTGCTGCGATCTTGCCTCATCCTTCTAAGGCAGCAACAGGTGGAGAAGATGCATATTTTATTGCGTGTGATGGCTGGTTTGGTGTGGCTGATGGAGTTGGCCAGTGGTCATTTGAAGGTATCAATGCAGGGCTTTATGCAAGGGAGCTAATGGATGGTTGTAAAAAGTTCATTATGGAGAAT CAAGGCGCTGCAGATATTAAACCCGAACAAGTTCTTTCCAAGGCTGCAGATGAAGCGCACTCTCCTGGTTCTTCCACTGTTTTGGTTGCTCACTTTGATGGCCAGTTCCTCAATGCATCGAATATTGGAGACTCTGGATTTCTGGTGATAAGAAATGGAGAGGTGTACCAAAAATCAAAACCAATGGTTTATGGTTTCAACTTTCCACTGCAAATTGAGAAGGGCGATAATCCCCTGAAACTTGTAC AGAATTATA ] [+] EMBL CB652023 [ CGGTTTCCTTGATGCGGGGGAGGAGGCCTCGGATGGCTCCACCGCGCGGGATTCCGACACCGACGTCGACACCGAGTCCAGCGCCTCCACCGCCGCCGACGACGACCAGCCCGCCGAGTTCGCCGTCCCGCCGCCACCGGCGGAAGAAGTTTGTAACAAGGTAGATTGGGAAAAGGACACTTCAGAGGTGAAGAATACTGATAGGATGGTTCCAGTAGCCTCATCAACGCTTGTGTTGGCATCAGGTGCTGCGATCTTGCCTCATCCTTCTAAGGCAGCAACAGGTGGAGAAGATGCATATTTTATTGCGTGTGATGGCTGGTTTGGTGTGGCTGATGGAGTTGGCCAGTGGTCATTTGAAGGTATCAATGCAGGGCTTTATGCAAGGGAGCTAATGGATGGTTGTAAAAAGTTCATTATGGAGAAT CGAGGCGCTGCAGATATTAAACCCGAACAAGTTCTTTCCAAGGCTGCAGATGAAGCGCACTCTCCTGGTTCTTCCACTGTTTTGGTTGCTCACTTTGATGGCCAGTTCCTCAATGCATCGAATATTGGAGACTCTGGATTTCTGGTGATAAGAAATGGAGAGGTGTACCAAAAATCAAAACCAATGGTTTATGGTTTCAACTTTCCACTGCAGATTGAGAAGGGCGATAATCCCCTGAAACTTGTAC AGAATTATA ] [+] EMBL AU030955 [ CGCCGTCCCGCCGCCACCGGGGAAAGAAGTTTGTAACAAGGTAGATTGGGAAAAGGACACTTCAGAGGTGAAGAATACTGATAGGATGGTTCCAGTAGCCTCATCAACGCTTGTGTTGGCATCAGGTGCTGCGATCTTGCCTCATCCTTCTAAGGCAGCAACAGGTGGAGAAGATGCATATTTTATTGCGTGTGATGGCTGGTTTGGTGTGGCTGATGGAGTTGGCCAGTGGTCATTTGAAGGTATCAATGCAGGGCTTTATGCAAGGGAGCTAATGGATGGTTGTAAAAAGTTCATTATGGAGAATCCAANGCGCTGC ] [+] EMBL AU032121 [ TGAAGGTATCAATGCAGGGCTTTATGCAAGGGAGCTAATGGATGGTTGTAAAAAGTTCATTATGGAGAAT CAAGGCGCTGCAGATATTAAACCCGAACAAGTTCTTTCCAAGGCTGCAGATGAAGCGCACTCTCCTGGTTCTTCCACTGTTTTGGTTGCTCACTTTGATGGCCAGTTCCTCAATGCATCGAATATTGGAGACTCTGGATTTCTGGTGATAAGAAATGGAGAGGTGTACCAAAAATCAAAACCAATGGTTTATGGTTTCAACTTTCCACTGCAAATTGAGAAGGGCGATAATCCCCTGAAACTTGTACAAGAATTATA ] [-] EMBL CB632591 [ TGGAGAGGTGTACCAAAAATCAAAACCAATGGTTTATGGTTTCAACTTTCCACTGCAAATTGAGAAGGGCGATAATCCCCTGAAACTTGTAC AGAATTATAC] consensusID : consensus_10765#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 275 fasta sequence [TCGTCTCCTCCTCCTCTCTCTCGAGCTCATCTCCATTTTCAAATCTCTCTTTGCTTGCTCGAGGTGAGCCATGGCGGAGCTGCCGCTGGCGGCGGGGCTGCTCGACCTGCGCCCCTGCAAGCTCGCCCCTCCCCCTCCACCGCCACTAATTCGGTTCAAATATACTTACAAACGCTAATGGCCTCTTGCTCCTCGCTCACAGATACTCTTTTTCACCAACTGCACTTCTGGATGGACCATATATAGATGAGTGTGGTGCACCTTGCTACGAGGCT] [+] EMBL CB632590 [TCGTCTCCTCCTCCTCTCTCTCGAGCTCATCTCCATTTTCAAATCTCTCTTTGCTTGCTCGAGGTGAGCCATGGCGGAGCTGCCGCTGGCGGCGGGGCTGCTCGACCTGCGCCCCTGCAAGCTCGCCCCTCCCCCTCCACCGCCACTAATTCGGTTCAAATATACTTACAAACGCTAATGGCCTCTTGCTCCTCGCTCACAGATACTCTTTTTCACCAACTGCACTTCTGGATGGACCATATATAGATGAGTGTGGTGCACCTTGCTACGAGGCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10765#0 CTTCACTCCCACCACTACTACTCCAGCACAAAAAACCTCGTCTCCTCCTCCTCCTCTCTC 60 consensus_10765#1 ----------------------------------------TCGTCTCCTCCTCCTCTCTC 20 ** **************** consensus_10765#0 TCGAGCTCATCTCCATTTTCAAATCTCTCTTTGCTTGCTCGAGGTGAGCCATGGCGGAGC 120 consensus_10765#1 TCGAGCTCATCTCCATTTTCAAATCTCTCTTTGCTTGCTCGAGGTGAGCCATGGCGGAGC 80 ************************************************************ consensus_10765#0 TGCCGCTGGCGGCGGGGCTGCTCGACCTGCGCCCCTGCAAGCTCGCCCCTCCCCCTCCCC 180 consensus_10765#1 TGCCGCTGGCGGCGGGGCTGCTCGACCTGCGCCCCTGCAAGCTCGCCCCTCCCCCTCCAC 140 ********************************************************** * consensus_10765#0 CGCCCCTCCCCGTCTCCCCCTCCCCTCGCCACCACCGCCGCCCCCACTCCACCGCCACCG 240 consensus_10765#1 CGCCACTAATTCGGTTCAAATATACTTACAAACGCTAATGGCCTC-TTGCTCCTCGCTCA 199 **** ** * * * ** * * * * * ** * * * ** * * consensus_10765#0 CCTGCCGCGCCGCCCCCGACCTCCACTCCTCCACCGAGCTCGCCGACGGGAGCATCGTCT 300 consensus_10765#1 CAGATACTCTTTTTCACCAACTGCACTTCTGGATGGACCATATATAGATGAGTGTGGTGC 259 * * * * ** **** ** * ** * * *** * ** consensus_10765#0 TCCGCTTCGCGCGCCCCCGGGACGACGACGACGAGGAGCAGCAGCAGCGGCGGGCGGACG 360 consensus_10765#1 ACCTTGCTACGAGGCT-------------------------------------------- 275 ** ** * * consensus_10765#0 CCGTGGCTCCCGAGGCCGCGGCCGTCGTCGAATCAGGGCTCGACGGTGACGCCGCCGCAG 420 consensus_10765#1 ------------------------------------------------------------ consensus_10765#0 CTGCTGAACCTGAGGCCCGGGATGGCGGTGGAGAAGGGGAGGTGACGGCGACGGCGACGG 480 consensus_10765#1 ------------------------------------------------------------ consensus_10765#0 GTTTGGACGCGGAGGAGGTGGTGGCGAGTGGAGGAGCGGAGGCGACGGCGACCTCCGGTT 540 consensus_10765#1 ------------------------------------------------------------ consensus_10765#0 TGGAGGATGCGGGGGAGGAGGCCTCGGATGGCTCCACCGCGCGGGATTCCGACACCGACG 600 consensus_10765#1 ------------------------------------------------------------ consensus_10765#0 TCGACACCGAGTCCAGCGCCTCCACCGCCGCCGACGACGACCAGCCCGCCGAGTTCGCCG 660 consensus_10765#1 ------------------------------------------------------------ consensus_10765#0 TCCCGCCGCCACCGGCGGAAGAAGTTTGTAACAAGGTAGATTGGGAAAAGGACACTTCAG 720 consensus_10765#1 ------------------------------------------------------------ consensus_10765#0 AGGTGAAGAATACTGATAGGATGGTTCCAGTAGCCTCATCAACGCTTGTGTTGGCATCAG 780 consensus_10765#1 ------------------------------------------------------------ consensus_10765#0 GTGCTGCGATCTTGCCTCATCCTTCTAAGGCAGCAACAGGTGGAGAAGATGCATATTTTA 840 consensus_10765#1 ------------------------------------------------------------ consensus_10765#0 TTGCGTGTGATGGCTGGTTTGGTGTGGCTGATGGAGTTGGCCAGTGGTCATTTGAAGGTA 900 consensus_10765#1 ------------------------------------------------------------ consensus_10765#0 TCAATGCAGGGCTTTATGCAAGGGAGCTAATGGATGGTTGTAAAAAGTTCATTATGGAGA 960 consensus_10765#1 ------------------------------------------------------------ consensus_10765#0 ATCAAGGCGCTGCAGATATTAAACCCGAACAAGTTCTTTCCAAGGCTGCAGATGAAGCGC 1020 consensus_10765#1 ------------------------------------------------------------ consensus_10765#0 ACTCTCCTGGTTCTTCCACTGTTTTGGTTGCTCACTTTGATGGCCAGTTCCTCAATGCAT 1080 consensus_10765#1 ------------------------------------------------------------ consensus_10765#0 CGAATATTGGAGACTCTGGATTTCTGGTGATAAGAAATGGAGAGGTGTACCAAAAATCAA 1140 consensus_10765#1 ------------------------------------------------------------ consensus_10765#0 AACCAATGGTTTATGGTTTCAACTTTCCACTGCAAATTGAGAAGGGCGATAATCCCCTGA 1200 consensus_10765#1 ------------------------------------------------------------ consensus_10765#0 AACTTGTACAGAATTATAC 1219 consensus_10765#1 ------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||