|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10767#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1496 fasta sequence
[CGTTTCTTCAGTTAGCTAGCTAGTTAGATGAAGATATTCAGATGGAGTGTCTCATACGAACAAACTCTTGCAATTTCACTGAGGAACCAAAGTTTCAGACTTTGTGTTACAGTTCGGAAAATAATTCTTTTTTTTAACTTGTTTTCTCCCTTTTGTTTTGAATGGAAAGAAATTATGTCGTGATTTTGGTCCCCTTATTTGTTTTCATGTTTTAGATGGAAGGGGCACTAATGTATGTGCATTTTTAGTAGCTTATTTTCTTGTGCTTTTTAGGCAGTGTTCTCCATGTTTAGCAATACAATAATACAGATGGTTCTTTCTGTTTATGCCCTGCTGGTTTTCTAGCAACTTCCATAGCTTTATGAGGAAAAGAAAAAATCTATCTATGGTAATAGAGAACAATATTAAAAAGATCGGCTCTTCTTACCTTTTGCACTTTTTCTTTCCCAGGCGAGGAGGATGGCGTCATCGTCAGCGTCGTCCGTGCCGGCGCCGTCGGGGTCGGTGATCACCATAGCGTCGGCGTCGGCGTCGGCGGCGGCGAACACGGCGGCGTGCGGCACGGGGTCGCCGTGCGCGGCGTGCAAGTTCCTCCGCCGCAAGTGCCAGCCCGACTGCGTGTTCGCGCCCTACTTCCCGCCGGACAACCCGCAGAAGTTCGTCCACGTGCACCGCGTCTTCGGCGCGAGCAACGTGACCAAGCTGCTGAACGAGCTGCACCCCTACCAGCGCGAGGACGCCGTGAACTCGCTCGCCTACGAGGCCGACATGCGCCTCCGCGACCCCGTCTACGGCTGCGTCGCCATCATCTCCATCCTCCAGCGCAACCTCCGCCAGCTCCAGCAGGACCTCGCCCGCGCCAAGTTCGAGCTCTCCAAGTACCAGCAGGCGGCGGCTGCGGCGGCGGCGGCTTCCGCGTCGACGGGGACGAATAACGGGCCGCACTCGATGGCGGAGTTCATCGGCAACGCGGTGCCGAACGGCGCGCAGAGCTTCATCAACGTCGGGCACTCGGCGGCGCTCGCCTCCGTCGGTGGCGCGGCGGCGTGCTTCGGGCAAGAGCAGCAGTTCTCGGCCGTCCACATGCTGTCGAGGAGCTACGAAGGGGAGCCCATCGCGAGGCTCGGCGGCAACGGCGGCTACGAGTTCGGGTACTCGACGTCGATGGCCGGCGGCGGGCATATGTCCGGGCTCGGCGCGCTCGGCGGCGCGCCGTTCTTGAAGTCCGGCATCGCCGGCAGCGACGAGAGGCAAGGCGCCGGCCAGTAGTTGGGAGCGCTTGATTCGGCGGTTGTTGTGTTCGTCTCTGCATGTCAGGTTACTGACTAGGAAATTAAAATTCCCTAAGTTCTGGAAATTGAAGCGGTGAAAAGGATCGTAAATTAAGGCTCATGCTTAGGAGGATTGCTCGGTCTATTTTACATGAAGATCATGCGTGTTCACTCTGTTAATTTGCCTTGTCAATGCTTATCTTTTTCTTTCAATCGATCATCCGC]
[+] EMBL AK119575 [CGTTTCTTCAGTTAGCTAGCTAGTTAGATGAAGATATTCAGATGGAGTGTCTCATACGAACAAACTCTTGCAATTTCACTGAGGAACCAAAGTTTCAGACTTTGTGTTACAGTTCGGAAAATAATTCTTTTTTTTAACTTGTTTTCTCCCTTTTGTTTTGAATGGAAAGAAATTATGTCGTGATTTTGGTCCCCTTATTTGTTTTCATGTTTTAGATGGAAGGGGCACTAATGTATGTGCATTTTTAGTAGCTTATTTTCTTGTGCTTTTTAGGCAGTGTTCTCCATGTTTAGCAATACAATAATACAGATGGTTCTTTCTGTTTATGCCCTGCTGGTTTTCTAGCAACTTCCATAGCTTTATGAGGAAAAGAAAAAATCTATCTATGGTAATAGAGAACAATATTAAAAAGATCGGCTCTTCTTACCTTTTGCACTTTTTCTTTCCCAGGCGAGGAGGATGGCGTCATCGTCAGCGTCGTCCGTGCCGGCGCCGTCGGGGTCGGTGATCACCATAGCGTCGGCGTCGGCGTCGGCGGCGGCGAACACGGCGGCGTGCGGCACGGGGTCGCCGTGCGCGGCGTGCAAGTTCCTCCGCCGCAAGTGCCAGCCCGACTGCGTGTTCGCGCCCTACTTCCCGCCGGACAACCCGCAGAAGTTCGTCCACGTGCACCGCGTCTTCGGCGCGAGCAACGTGACCAAGCTGCTGAACGAGCTGCACCCCTACCAGCGCGAGGACGCCGTGAACTCGCTCGCCTACGAGGCCGACATGCGCCTCCGCGACCCCGTCTACGGCTGCGTCGCCATCATCTCCATCCTCCAGCGCAACCTCCGCCAGCTCCAGCAGGACCTCGCCCGCGCCAAGTTCGAGCTCTCCAAGTACCAGCAGGCGGCGGCTGCGGCGGCGGCGGCTTCCGCGTCGACGGGGACGAATAACGGGCCGCACTCGATGGCGGAGTTCATCGGCAACGCGGTGCCGAACGGCGCGCAGAGCTTCATCAACGTCGGGCACTCGGCGGCGCTCGCCTCCGTCGGTGGCGCGGCGGCGTGCTTCGGGCAAGAGCAGCAGTTCTCGGCCGTCCACATGCTGTCGAGGAGCTACGAAGGGGAGCCCATCGCGAGGCTCGGCGGCAACGGCGGCTACGAGTTCGGGTACTCGACGTCGATGGCCGGCGGCGGGCATATGTCCGGGCTCGGCGCGCTCGGCGGCGCGCCGTTCTTGAAGTCCGGCATCGCCGGCAGCGACGAGAGGCAAGGCGCCGGCCAGTAGTTGGGAGCGCTTGATTCGGCGGTTGTTGTGTTCGTCTCTGCATGTCAGGTTACTGACTAGGAAATTAAAATTCCCTAAGTTCTGGAAATTGAAGCGGTGAAAAGGATCGTAAATTAAGGCTCATGCTTAGGAGGATTGCTCGGTCTATTTTACATGAAGATCATGCGTGTTCACTCTGTTAATTTGCCTTGTCAATGCTTATCTTTTTCTTTCAATCGATCATCCGC]
consensusID : consensus_10767#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1445 fasta sequence
[CCCCCATCTTCGCAACATACAGTACTCACCATCTTTTGGTGGCTCTCTCACTCTCCTCTCTCTCTCCCTAGAACAGAAACCCAAACAAAACGGGGCGAGGTAGTAGCTAGGGGGAAAAAGGGAGAAGTTTTCGGTTTAAAAGGAGAGAACGGCCCGGCCGGAAGTGGTGGAAGGCGAGGAGGAGGAGAACACGGTGAGATCAGGAGAGAGGAGATACCGGCCGGCGGAGGCGGCGGCGCGGCGGCGCAGGGATAGCGGGAAAAAAGATCGCGCCTAAAAAGGGCGAGGAGGATGGCGTCATCGTCAGCGTCGTCCGTGCCGGCGCCGTCGGGGTCGGTGATCACCATAGCGTCGGCGTCGGCGTCGGCGGCGGCGAACACGGCGGCGTGCGGCACGGGGTCGCCGTGCGCGGCGTGCAAGTTCCTCCGCCGCAAGTGCCAGCCCGACTGCGTGTTCGCGCCCTACTTCCCGCCGGACAACCCGCAGAAGTTCGTCCACGTGCACCGCGTCTTCGGCGCGAGCAACGTGACCAAGCTGCTGAACGAGCTGCACCCCTACCAGCGCGAGGACGCCGTGAACTCGCTCGCCTACGAGGCCGACATGCGCCTCCGCGACCCCGTCTACGGCTGCGTCGCCATCATCTCCATCCTCCAGCGCAACCTCCGCCAGCTCCAGCAGGACCTCGCCCGCGCCAAGTTCGAGCTCTCCAAGTACCAGCAGGCGGCGGCTGCGGCGGCGGCGGCTTCCGCGTCGACGGGGACGAAT-AACGGGCCGCACTCGATGGCGGAGTTCATCGGCAACGCGGTGCCGAACGGCGCGCAGAGCTTCATCAACGTCGGGCACTCGGCGGCGCTCGCCTCCGTCGGTGGCGCGGCGGCGTGCTTCGGGCAAGAGCAGCAGTTCTCGGCCGTCCACATGCTGTCGAGGAGCTACGAAGGGGAGCCCATCGCGAGGCTCGGCGGCAACGGCGGCTACGAGTTCGGGTACTCGACGTCGATGGCCGGCGGCGGGCATATGTCCGGGCTCGGCGCGCTCGGCGGCGCGCCGTTCTTGAAGTCCGGCATCGCCGGCAGCGACGAGAGGCAAGGCGCCGGCCAGTAGTTGGGAGCGCTTGATTCGGCGGTTGTTGTGTTCGTCTCTGCATGTCAGGTTACTGACTAGGAAATTAAAATTCCCTAAGTTCTGGAAATTGAAGCGGTGAAAAGGATCGTAAATTAAGGCTCATGCTTAGGAGGATTGCTCGGTCTATTTTACATGAAGATCATGCGTGTTCACTCTGTTATTTTGCCTTGTCAATGCTTATCTTTTTCTTTCAATCGATCATCCGCAATGTCGAACATTTTATTTGTGCCTTGATCTGTTGCTGGGATTGTTGCTGTACTGTGTGCATGCTTGTCCCTGATTTTAGCACTTGGACGGCTACCTTAATTAATACTACTATATTG]
[+] EMBL AK071407 [CCCCCATCTTCGCAACATACAGTACTCACCATCTTTTGGTGGCTCTCTCACTCTCCTCTCTCTCTCCCTAGAACAGAAACCCAAACAAAACGGGGCGAGGTAGTAGCTAGGGGGAAAAAGGGAGAAGTTTTCGGTTTAAAAGGAGAGAACGGCCCGGCCGGAAGTGGTGGAAGGCGAGGAGGAGGAGAACACGGTGAGATCAGGAGAGAGGAGATACCGGCCGGCGGAGGCGGCGGCGCGGCGGCGCAGGGATAGCGGGAAAAAAGATCGCGCCTAAAAAGGGCGAGGAGGATGGCGTCATCGTCAGCGTCGTCCGTGCCGGCGCCGTCGGGGTCGGTGATCACCATAGCGTCGGCGTCGGCGTCGGCGGCGGCGAACACGGCGGCGTGCGGCACGGGGTCGCCGTGCGCGGCGTGCAAGTTCCTCCGCCGCAAGTGCCAGCCCGACTGCGTGTTCGCGCCCTACTTCCCGCCGGACAACCCGCAGAAGTTCGTCCACGTGCACCGCGTCTTCGGCGCGAGCAACGTGACCAAGCTGCTGAACGAGCTGCACCCCTACCAGCGCGAGGACGCCGTGAACTCGCTCGCCTACGAGGCCGACATGCGCCTCCGCGACCCCGTCTACGGCTGCGTCGCCATCATCTCCATCCTCCAGCGCAACCTCCGCCAGCTCCAGCAGGACCTCGCCCGCGCCAAGTTCGAGCTCTCCAAGTACCAGCAGGCGGCGGCTGCGGCGGCGGCGGCTTCCGCGTCGACGGGGACGAAT AACGGGCCGCACTCGATGGCGGAGTTCATCGGCAACGCGGTGCCGAACGGCGCGCAGAGCTTCATCAACGTCGGGCACTCGGCGGCGCTCGCCTCCGTCGGTGGCGCGGCGGCGTGCTTCGGGCAAGAGCAGCAGTTCTCGGCCGTCCACATGCTGTCGAGGAGCTACGAAGGGGAGCCCATCGCGAGGCTCGGCGGCAACGGCGGCTACGAGTTCGGGTACTCGACGTCGATGGCCGGCGGCGGGCATATGTCCGGGCTCGGCGCGCTCGGCGGCGCGCCGTTCTTGAAGTCCGGCATCGCCGGCAGCGACGAGAGGCAAGGCGCCGGCCAGTAGTTGGGAGCGCTTGATTCGGCGGTTGTTGTGTTCGTCTCTGCATGTCAGGTTACTGACTAGGAAATTAAAATTCCCTAAGTTCTGGAAATTGAAGCGGTGAAAAGGATCGTAAATTAAGGCTCATGCTTAGGAGGATTGCTCGGTCTATTTTACATGAAGATCATGCGTGTTCACTCTGTTATTTTGCCTTGTCAATGCTTATCTTTTTCTTTCAATCGATCATCCGCAATGTCGAACATTTTATTTGTGCCTTGATCTGTTGCTGGGATTGTTGCTGTACTGTGTGCATGCTTGTCCCTGATTTTAGCACTTGGACGGCTACCTTAATTAATACTACTATATTG]
[+] EMBL C74432 [ ACTGCGTGTTCGCGCCCTACTTCCCGCCGGACAACCCGCAGAAGTTCGTCCACGTGCACCGCGTCTTCGGCGCGA NAACGTGACCAAGCTGCTGAACGAGCTGCACCCCTACCAGCGCGAGGACGCCGTGAACTCGCTCGCCTACGAGGCCGACATGCGCCTACGCGACCCCGTCTACGGCTGCGTCGCCATCATCTCCATCCTCCAGCGCAACCTCCGCCAGCTCCAGCAGGACCTCGCCCGCGCCAAGTTCGAGCTCTCCAAGTACCAACAGGCGGCGGTTTNNGCGGCGGCGGCTTCCGCGTCGACGGGGACGAATAAANGGGCGGCACTCGA ]
consensusID : consensus_10767#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1272 fasta sequence
[AAAAGGACATAACGGCCCGGCCGGAAGTGGTGGAAGGCGAGGAGGAGGAGAACACGGTGAGATCAGGAGAGAGGAGATACCGGCCGGCGGAGGCGGCGGCGCGGCGGCGCAGGGATAGCGGGAAAAAAGATCGCGCCTAAAAAGGGCGAGGAGGATGGCGTCATCGTCAGCGTCGTCCGTGCCGGCGCCGTCGGGGTCGGTGATCACCATAGCGTCGGCGTCGGCGTCGGCGGCGGCGAACACGGCGGCGTGCGGCACGGGGTCGCCGTGCGCGGCGTGCAAGTTCCTCCGCCGCAAGTGCCAGCCCGACTGCGTGTTCGCGCCCTACTTCCCGCCGGACAACCCGCAGAAGTTCGTCCACGTGCACCGCGTCTTCGGCGCGAGCAACGTGACCAAGCTGCTGAACGAGCTGCACCCCTACCAGCGCGAGGACGCCGTGAACTCGCTCGCCTACGAGGCCGACATGCGCCTCCGCGACCCCGTCTACGGCTGCGTCGCCATCATCTCCATCCTCCAGCGCAACCTCCGCCAGCTCCAGCAGGACCTCGCCCGCGCCAAGTTCGAGCTCTCCAAGTACCAGCAGGCGGCGGCTGCGGCGGCGGCGGCTTCCGCGTCGACGGGGACGAATAACGGGCCGCACTCGATGGCGGAGTTCATCGGCAACGCGGTGCCGAACGGCGCGCAGAGCTTCATCAACGTCGGGCACTCGGCGGCGCTCGCCTCCGTCGGTGGCGCGGCGGCGTGCTTCGGGCAAGAGCAGCAGTTCTCGGCCGTCCACATGCTGTCGAGGAGCTACGAAGGGGAGCCCATCGCGAGGCTCGGCGGCAACGGCGGCTACGAGTTCGGGTACTCGACGTCGATGGCCGGCGGCGGGCATATGTCCGGGCTCGGCGCGCTCGGCGGCGCGCCGTTCTTGAAGTCCGGCATCGCCGGCAGCGACGAGAGGCAAGGCGCCGGCCAGTAGTTGGGAGCGCTTGATTCGGCGGTTGTTGTGTTCGTCTCTGCATGTCAGGTGTGGCTTAGCATTCTTGCAGTACTGTGGCACTGTGCTCTTGTCTTCTTTTAGCTACTGTTCTTGAGATAACACTATTAATTAGCTATAAGTCTGAGTGTGTGTGCAGCTAGCGATGCATGGAGTATAATACGATGTTAAGTTGCTAAATATGGCGCATTATGTGGTGCTAATTTCGTGCTTAATTTGTCGCTAGCCAATCAGCCATCCTATAATTCTCAGAAACTTTGATTGCAATCCGGCCTTTTACTAAAAAAAAG]
[+] EMBL CB653953 [AAAAGGACATAACGGCCCGGCCGGAAGTGGTGGAAGGCGAGGAGGAGGAGAACACGGTGAGATCAGGAGAGAGGAGATACCGGCCGGCGGAGGCGGCGGCGCGGCGGCGCAGGGATAGCGGGAAAAAAGATCGCGCCTAAAAAGGGCGAGGAGGATGGCGTCATCGTCAGCGTCGTCCGTGCCGGCGCCGTCGGGGTCGGTGATCACCATAGCGTCGGCGTCGGCGTCGGCGGCGGCGAACACGGCGGCGTGCGGCACGGGGTCGCCGTGCGCGGCGTGCAAGTTCCTCCGCCGCAAGTGCCAGCCCGACTGCGTGTTCGCGCCCTACTTCCCGCCGGACAACCCGCAGAAGTTCGTCCACGTGCACCGCGTCTTCGGCGCGAGCAACGTGACCAAGCTGCTGAACGAGCTGCACCCCTACCAGCGCGAGGACGCCGTGAACTCGCTCGCCTACGAGGCCGACATGCGCCTCCGCGACCCCGTCTACGGCTGCGTCGCCATCATCTCCATCCTCCAGCGCAACCTCCGCCAGCTCCAGCAGGACCTCGCCCGCGCCAAGTTCGAGCTCTCCAAGTACCAGCAGGCGGCGGCTGCGGCGGCGGCGGCTTCCGCGTCGACGGGGACGAATAACGGGCCGCACTCGATGGCGGAGTTCATCGGCAACGCGGTGCCGAACGGCGCGCAGAGCTTCATCAACGTCG ]
[-] EMBL CB653954 [ AAGTTCGAGCTCTCCAAGTACCAGCAGGCGGCGGCTGCGGCGGCGGCGGCTTCCGCGTCGACGGGGACGAATAACGGGCCGCACTCGATGGCGGAGTTCATCGGCAACGCGGTGCCGAACGGCGCGCAGAGCTTCATCAACGTCGGGCACTCGGCGGCGCTCGCCTCCGTCGGTGGCGCGGCGGCGTGCTTCGGGCAAGAGCAGCAGTTCTCGGCCGTCCACATGCTGTCGAGGAGCTACGAAGGGGAGCCCATCGCGAGGCTCGGCGGCAACGGCGGCTACGAGTTCGGGTACTCGACGTCGATGGCCGGCGGCGGGCATATGTCCGGGCTCGGCGCGCTCGGCGGCGCGCCGTTCTTGAAGTCCGGCATCGCCGGCAGCGACGAGAGGCAAGGCGCCGGCCAGTAGTTGGGAGCGCTTGATTCGGCGGTTGTTGTGTTCGTCTCTGCATGTCAGGTGTGGCTTAGCATTCTTGCAGTACTGTGGCACTGTGCTCTTGTCTTCTTTTAGCTACTGTTCTTGAGATAACACTATTAATTAGCTATAAGTCTGAGTGTGTGTGCAGCTAGCGATGCATGGAGTATAATACGATGTTAAGTTGCTAAATATGGCGCATTATGTGGTGCTAATTTCGTGCTTAATTTGTCGCTAGCCAATCAGCCATCCTATAATTCTCAGAAACTTTGATTGCAATCCGGCCTTTTACTAAAAAAAAG]
consensusID : consensus_10767#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1167 fasta sequence
[AAGCCGGATCGATCGATCGATGGCGGCCTCGTCGTCGGCGTCGTCGTTGCCGCTGTCGTCCGGCTCGGTGATCACCGTCTCCTCGTCGCCGGCGGTGGGCGCGAGCTCCGGCGGCGGCGGCGGGACGGGGTCGCCGTGCGCGGCGTGCTAGTTCCTGCGGCGCAAGTGGCAGCCGGACTGCGTGTTCGCGCCCTACTTCCCGCCGGAGGACCCGCACAAGTTCGTGCACGTGCGCCGGGTGTTCGGAGCGAGCAACGTGACCAAGCTGCTGAACGAGCTCCACCCTTACCAGCGGGAGGACGCGGTGAACTCGCTGGCGTACGAGGCCGACATGCGCCTCCGCGACCCCGTCTACGGCTGCGTCGGCGTCATCTCCGTCCTCCAGCACCAGCTCCGCCAGCTCCAGCAAGACCTCTCCCGCGCCCGCTTCGAGCTCTCCAAGTACCAGGCGGCGGTGGCGGTGTCGTCGTCGAACGGGCAGGCGGCGGCGGCGGCGGCGATGGTGGATCACTTCATCGGGAGCGCGGTGCAGCCGAACTGCACGCAGAACTTCATCAGCGGCGGCGGCGTGGCGGCGGCGGCGATCGGCATCGGCGGGGGGGCGGGCGGTGGGTTCGTGAACGACCACCACCAGTTCTCTGCCGTGCAGATGCTGGCCAGGAGCTACGACGGCGAGAGCGCGGTGGCGAGGCTCGGCGGCGCCGTGAACGTGAGCGGCGGCGGCGGCTACGAGTTCGGGTACTCGTCCGCCATGGGCGGCGCCGGCGGGCCGATGTCCGGGCTCGGGCCGCTCGGCGGCGGGACGTTCCTCAAGCCCGGCACCGCCGGCGGCGGCGACCGGCCCACCGCCGCGCAGTAGCCGCGGCGGCCTGTTCAGCTTCGATCTTTGCATTGGGCAGGTAAATGAATTGAGGAGAATAACCAAGAGCTGAAGACTAAACTGGTGAATTACTATTAATATCCTAAAGACCCTTAGCTAGGAGGGCTTGTTTACCACCACTTTACATGCAGAAGAAAATGTGTTGTTACATTAGCAAATACTGCTTGTTTCATTTGTTCATGTTTATCTCTTTTTTTCTCCGTTCACAGAGACGAACCACCATATATATATATGTACTATCTTTAAGTAATTAGTGTGGCTTGCTGCATTTGATTGAAATTAAAAGG]
[+] EMBL CB673235 [AAGCCGGATCGATCGATCGATGGCGGCCTCGTCGTCGGCGTCGTCGTTGCCGCTGTCGTCCGGCTCGGTGATCACCGTCTCCTCGTCGCCGGCGGTGGGCGCGAGCTCCGGCGGCGGCGGCGGGACGGGGTCGCCGTGCGCGGCGTGCTAGTTCCTGCGGCGCAAGTGGCAGCCGGACTGCGTGTTCGCGCCCTACTTCCCGCCGGAGGACCCGCACAAGTTCGTGCACGTGCGCCGGGTGTTCGGAGCGAGCAACGTGACCAAGCTGCTGAACGAGCTCCACCCTTACCAGCGGGAGGACGCGGTGAACTCGCTGGCGTACGAGGCCGACATGCGCCTCCGCGACCCCGTCTACGGCTGCGTCGGCGTCATCTCCGTCCTCCAGCACCAGCTCCGCCAGCTCCAGCAAGACCTCTCCCGCGCCCGCTTCGAGCTCTCCAAGTACCAGGCGGCGGTGGCGGTGTCGTCGTCGAACGGGCAGGCGGCGGCGGCGGCGGCGATGGTGGATCACTTCATCGGGAGCGCGGTGCAGCCGAACTGCACGCAGAACTTCATCAGCGGCGGCGGCGTGGCGGCGGCGGCGATCGGCATCGGCGGGGGGGCGGGCGGTGGGTTCGTGAACGACCACCACCAGTTCTCTGCC ]
[-] EMBL CB673236 [ CGGCGGTGGCGGTGTCGTCGTCGAACGGGCAGGCGGCGGCGGCGGCGGCGATGGTGGATCACTTCATCGGGAGCGCGGTGCAGCCGAACTGCACGCAGAACTTCATCAGCGGCGGCGGCGTGGCGGCGGCGGCGATCGGCATCGGCGGGGGGGCGGGCGGTGGGTTCGTGAACGACCACCACCAGTTCTCTGCCGTGCAGATGCTGGCCAGGAGCTACGACGGCGAGAGCGCGGTGGCGAGGCTCGGCGGCGCCGTGAACGTGAGCGGCGGCGGCGGCTACGAGTTCGGGTACTCGTCCGCCATGGGCGGCGCCGGCGGGCCGATGTCCGGGCTCGGGCCGCTCGGCGGCGGGACGTTCCTCAAGCCCGGCACCGCCGGCGGCGGCGACCGGCCCACCGCCGCGCAGTAGCCGCGGCGGCCTGTTCAGCTTCGATCTTTGCATTGGGCAGGTAAATGAATTGAGGAGAATAACCAAGAGCTGAAGACTAAACTGGTGAATTACTATTAATATCCTAAAGACCCTTAGCTAGGAGGGCTTGTTTACCACCACTTTACATGCAGAAGAAAATGTGTTGTTACATTAGCAAATACTGCTTGTTTCATTTGTTCATGTTTATCTCTTTTTTTCTCCGTTCACAGAGACGAACCACCATATATATATATGTACTATCTTTAAGTAATTAGTGTGGCTTGCTGCATTTGATTGAAATTAAAAGG]
consensusID : consensus_10767#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 385 fasta sequence
[TACGAAGGGGACCCCATCGCGAGGCTCGGCGGCAACGGCGGCTACGAGTTCGGGTACTCGACGTCGATGNCCGGCGGCGGGCATATGTCCGGGCTTCGGCGCGCTCGGCGGCGCGCCGTTCTTGAAGTCCGGCATCGCCGGCAGCGACGAGAGGCAAGGCGCCGGCCAGTAGTTGGGAGCGCTTGATTCGGCGGTTGTTGTGTTCGTCTCTGCATGTCAGGTGTGGCTTAGCATTCTTGCAGTACTGTGGCACTGTGCTCTTGTCTTCTTTTAGCTACTGTTCTTGAGATAACACTATTAATTAGCTATAAGTCTGAGTGTGTGTGCAGCTAGCGATGCATGGAGTATAATACGATGTTAAGTTGCTAAAAAAAAAAAAAAAANA]
[+] EMBL AU029704 [TACGAAGGGGACCCCATCGCGAGGCTCGGCGGCAACGGCGGCTACGAGTTCGGGTACTCGACGTCGATGNCCGGCGGCGGGCATATGTCCGGGCTTCGGCGCGCTCGGCGGCGCGCCGTTCTTGAAGTCCGGCATCGCCGGCAGCGACGAGAGGCAAGGCGCCGGCCAGTAGTTGGGAGCGCTTGATTCGGCGGTTGTTGTGTTCGTCTCTGCATGTCAGGTGTGGCTTAGCATTCTTGCAGTACTGTGGCACTGTGCTCTTGTCTTCTTTTAGCTACTGTTCTTGAGATAACACTATTAATTAGCTATAAGTCTGAGTGTGTGTGCAGCTAGCGATGCATGGAGTATAATACGATGTTAAGTTGCTAAAAAAAAAAAAAAAANA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10767#0 CGTTTCTTCAGTTAGCTAGCTAGTTAGATGAAGATATTCAGATGGAGTGTCTCATACGAA 60
consensus_10767#3 ------------------------------------------------------------
consensus_10767#1 ------------------------------------------------------------
consensus_10767#2 ------------------------------------------------------------
consensus_10767#4 ------------------------------------------------------------
consensus_10767#0 CAAACTCTTGCAATTTCACTGAGGAACCAAAGTTTCAGACTTTGTGTTACAGTTCGGAAA 120
consensus_10767#3 ------------------------------------------------------------
consensus_10767#1 ------------------------------------------------------------
consensus_10767#2 ------------------------------------------------------------
consensus_10767#4 ------------------------------------------------------------
consensus_10767#0 ATAATTCTTTTTTTTAACTTGTTTTCTCCCTTTTGTTTTGAATGGAAAGAAATTATGTCG 180
consensus_10767#3 ------------------------------------------------------------
consensus_10767#1 ----------------------------------------------CCCCCATCTTCGCA 14
consensus_10767#2 ------------------------------------------------------------
consensus_10767#4 ------------------------------------------------------------
consensus_10767#0 TGATTTTGGTCCCCTTATTTGTTTTCATGTTTTAGATGGAAGGGGCACTAATGTATGTGC 240
consensus_10767#3 ------------------------------------------------------------
consensus_10767#1 ACATACAGTACTCACCATCTTTTGGTGGCTCTCTCACTCTCCTCTCTCTCTCCCTAGAAC 74
consensus_10767#2 ------------------------------------------------------------
consensus_10767#4 ------------------------------------------------------------
consensus_10767#0 ATTTTTAGTAGCTTATTTTCTTGTGCTTTTTAGGCAGTGTTCTCCATGTTTAGCAATACA 300
consensus_10767#3 ------------------------------------------------------------
consensus_10767#1 AGAAACCCAAACAAAACGGGGCGAGGTAGTAGCTAGGGGGAAAAAGGGAGAAGTTTTCGG 134
consensus_10767#2 ------------------------------------------------------------
consensus_10767#4 ------------------------------------------------------------
consensus_10767#0 ATAATACAGATGGTTCTTTCTGTTTATGCCCTGCTGGTTTTCTAGCAACTTCCATAGCTT 360
consensus_10767#3 ------------------------------------------------------------
consensus_10767#1 TTTAAAAGGAGAGAACGGCCCGGCCGGAAGTGGTGGAAGGCGAGGAGGAGGAGAACACGG 194
consensus_10767#2 -------------------AAAAGGACATAACGGCCCGGCCGGAAGTGGTGGAAGGCGAG 41
consensus_10767#4 ------------------------------------------------------------
consensus_10767#0 TATGAGGAAAAGAAAAAATCTATCTATGGTAATAGAGAACAATATTAAAAAGATCGGCTC 420
consensus_10767#3 ------------------------------------------------------------
consensus_10767#1 TGAGATCAGGAGAGAGGAGATACCGGCCGGCGGAGGCGGCGGCGC--GGCGGCGCAGGGA 252
consensus_10767#2 GAGGAGGAGAACACGGTGAGATCAGGAGAGAGGAGATACCGGCCGGCGGAGGCGGCGGCG 101
consensus_10767#4 ------------------------------------------------------------
consensus_10767#0 TTCTTACCTTTTGCACTTTTTCTTTCCCAGGCGAG-GAGGATGGCGTCATCGTCAGCGTC 479
consensus_10767#3 ------------------AAGCCGGATCGATCGATCGATGGCGGCCTCGTCGTCGGCGTC 42
consensus_10767#1 TAGCGGGAAAAAAGATCGCGCCTAAAAAGGGCGAG-GAGGATGGCGTCATCGTCAGCGTC 311
consensus_10767#2 CGGCGGCGCAGGGATAGCGGGAAAAAAGATCGCGCCTAAAAAGGGCGAGGAGGATGGCGT 161
consensus_10767#4 ------------------------------------------------------------
consensus_10767#0 GTCCGTGCCGGCGCCGTCGGGGTCGGTGATCACCATAGCGTCGGCGTCGGCGTCGGCGGC 539
consensus_10767#3 GTCGTTGCCGCTGTCGTCCGGCTCGGTGATCACCGTCTCCTCGTCGCCGGCGGTGGGCGC 102
consensus_10767#1 GTCCGTGCCGGCGCCGTCGGGGTCGGTGATCACCATAGCGTCGGCGTCGGCGTCGGCGGC 371
consensus_10767#2 CATCGTCAGCGTCGTCCGTGCCGGCGCCGTCGGGGTCGGTGATCACCATAGCGTCGGCGT 221
consensus_10767#4 ------------------------------------------------------------
consensus_10767#0 G-GCGAACACGGCGGCGTGCGGCACGGGGTCGCCGTGCGCGGCGTGCAAGTTCCTCCGCC 598
consensus_10767#3 GAGCTCCGGCGGCGGCG-GCGGGACGGGGTCGCCGTGCGCGGCGTGCTAGTTCCTGCGGC 161
consensus_10767#1 G-GCGAACACGGCGGCGTGCGGCACGGGGTCGCCGTGCGCGGCGTGCAAGTTCCTCCGCC 430
consensus_10767#2 CGGCGTCGGCGGCGGCGAACACGGCGGCGTGCGGCACGGGGTCGCCGTGCGCGGCGTGCA 281
consensus_10767#4 ------------------------------------------------------------
consensus_10767#0 GCAAGTGCCAGCCCGACTGCGTGTTCGCGCCCTACTTCCCGCCGGACAACCCGCAGAAGT 658
consensus_10767#3 GCAAGTGGCAGCCGGACTGCGTGTTCGCGCCCTACTTCCCGCCGGAGGACCCGCACAAGT 221
consensus_10767#1 GCAAGTGCCAGCCCGACTGCGTGTTCGCGCCCTACTTCCCGCCGGACAACCCGCAGAAGT 490
consensus_10767#2 AGTTCCTCCGCCGCAAGTGCCAGCCCGACTGCGTGTTCGCGCCCTACTTCCCGCCGGACA 341
consensus_10767#4 ------------------------------------------------------------
consensus_10767#0 TCGTCCACGTGCACCGCGTCTTCGGCGCGAGCAACGTGACCAAGCTGCTGAACGAGCTGC 718
consensus_10767#3 TCGTGCACGTGCGCCGGGTGTTCGGAGCGAGCAACGTGACCAAGCTGCTGAACGAGCTCC 281
consensus_10767#1 TCGTCCACGTGCACCGCGTCTTCGGCGCGAGCAACGTGACCAAGCTGCTGAACGAGCTGC 550
consensus_10767#2 ACCCGCAGAAGTTCGTCCACGTGCACCGCGTCTTCGGCGCGAGCAACGTGACCAAGCTGC 401
consensus_10767#4 ------------------------------------------------------------
consensus_10767#0 ACCCCTACCAGCGCGAGGACGCCGTGAACTCGCTCGCCTACGAGGCCGACATGCGCCTCC 778
consensus_10767#3 ACCCTTACCAGCGGGAGGACGCGGTGAACTCGCTGGCGTACGAGGCCGACATGCGCCTCC 341
consensus_10767#1 ACCCCTACCAGCGCGAGGACGCCGTGAACTCGCTCGCCTACGAGGCCGACATGCGCCTCC 610
consensus_10767#2 TGAACGAGCTGCACCCCTACCAGCGCGAGGACGCCGTGAACTCGCTCGCCTACGAGGCCG 461
consensus_10767#4 ------------------------------------------------------------
consensus_10767#0 GCGACCCCGTCTACGGCTGCGTCGCCATCATCTCCATCCTCCAGCGCAACCTCCGCCAGC 838
consensus_10767#3 GCGACCCCGTCTACGGCTGCGTCGGCGTCATCTCCGTCCTCCAGCACCAGCTCCGCCAGC 401
consensus_10767#1 GCGACCCCGTCTACGGCTGCGTCGCCATCATCTCCATCCTCCAGCGCAACCTCCGCCAGC 670
consensus_10767#2 ACATGCGCCTCCGCGACCCCGTCTACGGCTGCGTCGCCATCATCTCCATCCTCCAGCGCA 521
consensus_10767#4 ------------------------------------------------------------
consensus_10767#0 TCCAGCAGGACCTCGCCCGCGCCAAGTTCGAGCTCTCCAAGTACCAGCAGGCGGCGGCTG 898
consensus_10767#3 TCCAGCAAGACCTCTCCCGCGCCCGCTTCGAGCTCTCCAAGTACCA---GGCGGCGGTGG 458
consensus_10767#1 TCCAGCAGGACCTCGCCCGCGCCAAGTTCGAGCTCTCCAAGTACCAGCAGGCGGCGGCTG 730
consensus_10767#2 ACCTCCGCCAGCTCCAGCAGGACCTCGCCCGCGCCAAGTTCGAGCTCTCCAAGTACCAGC 581
consensus_10767#4 ------------------------------------------------------------
consensus_10767#0 CGGCGGCGGCGGCTTCCGCGTCGACGGGGACGAATAACGGGCCGCACTCGATGGCGGAGT 958
consensus_10767#3 CGGTGTCGTCGTCGAACGGGCAGGCGGCGGCGGC-----GGCGGCGAT-GGTGGATCACT 512
consensus_10767#1 CGGCGGCGGCGGCTTCCGCGTCGACGGGGACGAATAACGGGCCGCACTCGATGGCGGAGT 790
consensus_10767#2 AGGCGGCGGCTGCGGCGGCGGCGGCTTCCGCGTCGACGGGGACGAATAACGGGCCGCACT 641
consensus_10767#4 ------------------------------------------------------------
consensus_10767#0 TCATCGGCAACGCGGTGC---CGAACGGCGCGCAGAGCTTCATCAACGTCGGGCACTCGG 1015
consensus_10767#3 TCATCGGGAGCGCGGTGCAGCCGAACTGCACGCAGAACTTCATCAGCGGCGGCGGCGTGG 572
consensus_10767#1 TCATCGGCAACGCGGTGC---CGAACGGCGCGCAGAGCTTCATCAACGTCGGGCACTCGG 847
consensus_10767#2 CGATGGCGGAGTTCATCGGCAACGCGGTGCCGAACGGCGCGCAGAGCTTCATCAACGTCG 701
consensus_10767#4 ------------------------------------------------------------
consensus_10767#0 CGGCGCTCGCCTCCGTCGGTGGCGCGGCGGCGTGC------TTCGGGCAAGAGCAGCA-- 1067
consensus_10767#3 CGGCGGCGGCGATCGGCATCGGCGGGGGGGCGGGCGGTGGGTTCGTGAACGACCACCACC 632
consensus_10767#1 CGGCGCTCGCCTCCGTCGGTGGCGCGGCGGCGTGC------TTCGGGCAAGAGCAGCA-- 899
consensus_10767#2 GGCACTCGGCGGCGCTCGCCTCCGTCGGTGGCGCGGCGGCGTGCTTCGGGCAAGAGCAGC 761
consensus_10767#4 ------------------------------------------------------------
consensus_10767#0 -GTTCTCGGCCGTCCACATGCTGTCGAGGAGCTACGAAGGGGAGCCCA---TCGCGAGGC 1123
consensus_10767#3 AGTTCTCTGCCGTGCAGATGCTGGCCAGGAGCTACGACGGCGAGAGCGCGGTGGCGAGGC 692
consensus_10767#1 -GTTCTCGGCCGTCCACATGCTGTCGAGGAGCTACGAAGGGGAGCCCA---TCGCGAGGC 955
consensus_10767#2 AGTTCTCGGCCGTCCACATGCTGTCGAGGAGCTACGAAGGGGAGCCCA---TCGCGAGGC 818
consensus_10767#4 --------------------------------TACGAAGGGGACCCCA---TCGCGAGGC 25
***** ** ** * * *******
consensus_10767#0 TCGGCGGCA------------------ACGGCGGCTACGAGTTCGGGTACTCGACGTCGA 1165
consensus_10767#3 TCGGCGGCGCCGTGAACGTGAGCGGCGGCGGCGGCTACGAGTTCGGGTACTCGTCCGCCA 752
consensus_10767#1 TCGGCGGCA------------------ACGGCGGCTACGAGTTCGGGTACTCGACGTCGA 997
consensus_10767#2 TCGGCGGCA------------------ACGGCGGCTACGAGTTCGGGTACTCGACGTCGA 860
consensus_10767#4 TCGGCGGCA------------------ACGGCGGCTACGAGTTCGGGTACTCGACGTCGA 67
******** ************************* * * *
consensus_10767#0 TGGCCGGCG---GCGGGCATATGTCCGGGCT-CGGCGCGCTCGGCGGCGCGCCGTTCTTG 1221
consensus_10767#3 TGGGCGGCGCCGGCGGGCCGATGTCCGGGCT-CGGGCCGCTCGGCGGCGGGACGTTCCTC 811
consensus_10767#1 TGGCCGGCG---GCGGGCATATGTCCGGGCT-CGGCGCGCTCGGCGGCGCGCCGTTCTTG 1053
consensus_10767#2 TGGCCGGCG---GCGGGCATATGTCCGGGCT-CGGCGCGCTCGGCGGCGCGCCGTTCTTG 916
consensus_10767#4 TGNCCGGCG---GCGGGCATATGTCCGGGCTTCGGCGCGCTCGGCGGCGCGCCGTTCTTG 124
** ***** ****** *********** *** ************ * ***** *
consensus_10767#0 AAGTCCGGCATCGCCGGCAGCGACGAGAGGCAAGGCGCCGGCCAGTAGTTGGGAGCGCTT 1281
consensus_10767#3 AAGCCCGGCACCGCCGGCGGCGGCGACCGGCCCACCGCCGCGCAGTAGCCGCGGCGGCCT 871
consensus_10767#1 AAGTCCGGCATCGCCGGCAGCGACGAGAGGCAAGGCGCCGGCCAGTAGTTGGGAGCGCTT 1113
consensus_10767#2 AAGTCCGGCATCGCCGGCAGCGACGAGAGGCAAGGCGCCGGCCAGTAGTTGGGAGCGCTT 976
consensus_10767#4 AAGTCCGGCATCGCCGGCAGCGACGAGAGGCAAGGCGCCGGCCAGTAGTTGGGAGCGCTT 184
*** ****** ******* *** *** *** ***** ****** * * ** *
consensus_10767#0 GATTCGGCGGTTGTTGTGTTCGTCTCTGCAT--GTCAGGTTACTGACTAGGAAATTAAAA 1339
consensus_10767#3 G-TTCAGCT---------TCGATCTTTGCATTGGGCAGGTAAATGAATTGAGGAGAATAA 921
consensus_10767#1 GATTCGGCGGTTGTTGTGTTCGTCTCTGCAT--GTCAGGTTACTGACTAGGAAATTAAAA 1171
consensus_10767#2 GATTCGGCGGTTGTTGTGTTCGTCTCTGCAT--GTCAGGTG--TGGCTTAGCATTCTTGC 1032
consensus_10767#4 GATTCGGCGGTTGTTGTGTTCGTCTCTGCAT--GTCAGGTG--TGGCTTAGCATTCTTGC 240
* *** ** * *** ***** * ***** ** *
consensus_10767#0 TTCCCTAAGTTCTGGAAATTGAAGCGGTGAA--AAGGATCGTAAATTAAGG-CTCATGCT 1396
consensus_10767#3 ----CCAAGAGCTGAAGACTAAACTGGTGAATTACTATTAATATCCTAAAGACCCTTAGC 977
consensus_10767#1 TTCCCTAAGTTCTGGAAATTGAAGCGGTGAA--AAGGATCGTAAATTAAGG-CTCATGCT 1228
consensus_10767#2 -------AGTACTG-----TGGCACTGTGCT---CTTGTCTTCTTTTAGCTACTGTTCTT 1077
consensus_10767#4 -------AGTACTG-----TGGCACTGTGCT---CTTGTCTTCTTTTAGCTACTGTTCTT 285
** *** * *** * * ** * *
consensus_10767#0 TAGGAGGA-TTGCTCGGT-CTATTTTACATG---AAGATCATGCGTGTTCACT------- 1444
consensus_10767#3 TAGGAGGGCTTGTTTACCACCACTTTACATGCAGAAGAAAATGTGTTGTTACATTAGCAA 1037
consensus_10767#1 TAGGAGGA-TTGCTCGGT-CTATTTTACATG---AAGATCATGCGTGTTCACT------- 1276
consensus_10767#2 GAGATAACACTATTAATT--AGCTATAAGTCT--GAGTGTGTGTGCAGCTAGC------- 1126
consensus_10767#4 GAGATAACACTATTAATT--AGCTATAAGTCT--GAGTGTGTGTGCAGCTAGC------- 334
** * * * ** * ** ** * *
consensus_10767#0 ---CTGTTAATTTGCCTTGTCAATGCTTATCTTTTTCTTTCAATCGATCATCCGC----- 1496
consensus_10767#3 ATACTGCTTGTTTCATTTGTTCATGTTTATCTCTTTTTTTCT-CCGTTCACAGAGACGAA 1096
consensus_10767#1 ---CTGTTATTTTGCCTTGTCAATGCTTATCTTTTTCTTTCAATCGATCATCCGCAATGT 1333
consensus_10767#2 --GATGCATGGAGTATAATACGATGTTAAGTTGCTAAATATGGCGCATTATGTGGTGCTA 1184
consensus_10767#4 --GATGCATGGAGTATAATACGATGTTAAGTTGCTAAAAAAAAAAAAAAAANA------- 385
** *** * * * * *
consensus_10767#0 ------------------------------------------------------------
consensus_10767#3 CCACCATAT-ATATATATGT-ACTATCTTTAAGTAATTAGTGTGGCTTGCTGCATTTGAT 1154
consensus_10767#1 CGAACATTTTATTTGTGCCTTGATCTGTTGCTGGGATTGTTGCTGTACTGTGTGCATGCT 1393
consensus_10767#2 ATTTCGTGCTTAATTTGTCGCTAGCCAATCAGCCATCCTATAATTCTCAGAAACTTTGAT 1244
consensus_10767#4 ------------------------------------------------------------
consensus_10767#0 ----------------------------------------------------
consensus_10767#3 TGAAATTAAAAGG--------------------------------------- 1167
consensus_10767#1 TGTCCCTGATTTTAGCACTTGGACGGCTACCTTAATTAATACTACTATATTG 1445
consensus_10767#2 TGCAATCCGGCCTTTTACTAAAAAAAAG------------------------ 1272
consensus_10767#4 ----------------------------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||