Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 1079 cluster # 1079       Sequences # 2       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1079#0 length = 638 sequences # 2  

consensusID : consensus_1079#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 638
fasta sequence
                              [CCTTTTTTTTTTTTTTTTTGGACAACTTCATCATGGTAAGCCGTATATACACTATACAATATACACACAGCTACGTACAGCCCCGCGCGTCCAACTTTTGCAGACTTCCTGCACGGGCCGGCCGGTTCAGATTTCAGAATACATGTTGACACGGGGCAGTGTCGCTATACATACCAGAGCACATATATATACACATCTTAATTAATATTTATATTTCCTCCGTTTCATAATGGAAGGCATTCATGTATTTTCTATATTCATATTAAATTCATTAACATTAATATGAATGTAGAAAATGGTAGAATGACTTATATTTTGAAACTGATCCATCGAATCAATTAATGACGTGGTTGATCGGCGTGTGTTTTGTTTATATAATCAGACGGGGTAGGAGGCCATCTGTGCGATGCCGCAGGCGCCCTCGCGGCCGACGCCGCGGC-GGATCCTGACGTAGCCGCCCTCGCCCCACGACGCGCCCCACGAGTTCTTCATCAGCCAGTAGCCCGTGCCGTCGCTCGCCGTGCCGTACCCGACCGCCGTCACGGCGTGGTTCAGCTCCGTGCCGCACCCGGCGCCGCCGAGCACGCCGCGGTCGTAGAACCGGAACACGTACCCGGCGCCGTTGATGGCCACGGACA]

[+] EMBL CB656443             [CCTTTTTTTTTTTTTTTTTGGACAACTTCATCATGGTAAGCCGTATATACACTATACAATATACACACAGCTACGTACAGCCCCGCGCGTCCAACTTTTGCAGACTTCCTGCACGGGCCGGCCGGTTCAGATTTCAGAATACATGTTGACACGGGGCAGTGTCGCTATACATACCAGAGCACATATATATACACATCTTAATTAATATTTATATTTCCTCCGTTTCATAATGGAAGGCATTCATGTATTTTCTATATTCATATTAAATTCATTAACATTAATATGAATGTAGAAAATGGTAGAATGACTTATATTTTGAAACTGATCCATCGAATCAATTAATGACGTGGTTGATCGGCGTGTGTTTTGTTTATATAATCAGACGGGGTAGGAGGCCATCTGTGCGATGCCGCAGGCGCCCTCGCGGCCGACGCCGCGGC GGATCCTGACGTAGCCGCCCTCGCCCCACGACGCGCCCCACGAGTTCTTCATCAGCCAGTAGCCCGTGCCGTCGCTCGCCGTGCCGTACCCGACCGCCGTCACGGCGTGGTTCAGCTCCGTGCCGCACCCGGCGCCGCCGAGCACGCCGCGGTCGTAGAACCGGAACACGTACCCGGCGCCGTTGATGGCCACGGACA]
[-] EMBL AU056247             [ttTTTTTTTTTTTTTTTTTGTACAACTTCATCATGGTAAGTAGTATATACACTATACAATATACACACAGCTACGTACAGCCCCGCGCGTCCAACTTTTNCAGACTTCCTGCACGGGCCGGCCGGTTCAGATTTCAGAATACATGTTGACACGGTGCAGTGTCGCTATACATACCAGAGCACATATATATACACATCTTAATTAATATTTATATTTCCTCCGTTTCATAATGTAAGTCATTCATGTATTTTCTATATTCATATTAGATTCATTAACATTAATATGAATGTAGAGAATGTTAGAATGACTTATATTTTGAAACTGATCCATCGAATCAATTAATGANGTGGTTGATCGGCGTGTGTTTTGTTTATATAATCAGACGGGGTAGGAGGCCATCTGTGCGATGCCGCAGG GCCCTCGCGGCCGACGCCGCGGCGGGATCCTGA                                                                                                                                                                                             ]


>consensus_1079#0 CCTTTTTTTTTTTTTTTTTGGACAACTTCATCATGGTAAGCCGTATATACACTATACAAT ATACACACAGCTACGTACAGCCCCGCGCGTCCAACTTTTGCAGACTTCCTGCACGGGCCG GCCGGTTCAGATTTCAGAATACATGTTGACACGGGGCAGTGTCGCTATACATACCAGAGC ACATATATATACACATCTTAATTAATATTTATATTTCCTCCGTTTCATAATGGAAGGCAT TCATGTATTTTCTATATTCATATTAAATTCATTAACATTAATATGAATGTAGAAAATGGT AGAATGACTTATATTTTGAAACTGATCCATCGAATCAATTAATGACGTGGTTGATCGGCG TGTGTTTTGTTTATATAATCAGACGGGGTAGGAGGCCATCTGTGCGATGCCGCAGGCGCC CTCGCGGCCGACGCCGCGGCGGATCCTGACGTAGCCGCCCTCGCCCCACGACGCGCCCCA CGAGTTCTTCATCAGCCAGTAGCCCGTGCCGTCGCTCGCCGTGCCGTACCCGACCGCCGT CACGGCGTGGTTCAGCTCCGTGCCGCACCCGGCGCCGCCGAGCACGCCGCGGTCGTAGAA CCGGAACACGTACCCGGCGCCGTTGATGGCCACGGACA



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)