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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10794#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1268 fasta sequence
[GGATTCTAGCTGTCTTTCTTCACTGCTGCAGATACATGATTTCCTCAAACATTGGTGAAGTTGCGTCAATTTTCCTAACTTCTGCTCTGGGTATTCCTGAGGGGTTGATACCGGTTCAACTTCTATGGGTAAACCTTGTCACCGACGGTCCTCCTGCAACTGCATTAGGTTTCAATCCACCTGATAAAGACATCATGAAGAAACCGCCTAGAAAGAGTGATGACTCACTGATTACTCCCTGGATTTTGTTCCGTTACCTGGTCATTGGCCTTTATGTGGGGATTGCCACGGTCGGCATCTTTGTCATATGGTACACACATGGATCTTTCATGGGCATTGACCTCACCGGAGATGGTCACACCCTTGTCAGCTACTCTCAGCTCTCAAACTGGGGCCAGTGCTCTACCTGGAACAACTTCACAGTTACGCCTTTCACTGCTGGAGCTAGGACTTTCACCTTCGATGACAATCCATGCGAGTACTTCCATGGTGGCAAAGTGAAGGCGACAACGCTCTCGCTGTCTGTCCTGGTGGCGATTGAGATGTTCAACTCACTCAACGCCCTCTCCGAAGACACTAGCCTCCTGAGGATGCCTCCTTGGGTAAACCCATGGCTGCTCCTCGCCATGTCAGTGTCGTTCGGGCTCCATTTCTTGATCCTCTACGTGCCGTTCCTCGCGCAAGTGTTTGGCATCGTGCCGCTCAGCTTGAACGAGTGGCTGCTGGTGTTGCTTGTTGCACTCCCGGTGGTGCTCATCGACGAGGTTCTCAAGTTTGTCGGAAGGTGTACAAGCTCATCAGGCCCCAAGAGGCGAACCAGGAAGCAGAAGGGCGAGTAAAATGCTAACAGTGATTCTTCAGACTCATCAGTAACAAAAGTCACTGAATTTGTTGTGATCAAGTAACAATGATCACCAAATGATGTTTATTCAATAGAAATATGTCCAATACAAGAAAGTTCAGGAAAGAGATTTTCTCAAAACAGGTCATCACTCTTTGGGAAGTTGATAACCTTTGCTGTTCTTTTATTCCTTGTCCTAAATGGTACTATACTGAGCTCACAGCAAACCAGCAGGCAGCAGCATTGTTCTGTTGGCAACATTTTGCTTCTGTGAATTATTATATATAGATGAAATATTTAGATCAAATTATACACATTTCTGCCTACCTTATTATGCTTCTGCTGTGTGGTTTCTGAGCTGGTTGATCTGGCAGGCCAATACTCAATTAATTCTCCCTGTGAATTGTCTCTAAAAAAAAAAAAAAAA]
[+] EMBL AK062874 [GGATTCTAGCTGTCTTTCTTCACTGCTGCAGATACATGATTTCCTCAAACATTGGTGAAGTTGCGTCAATTTTCCTAACTTCTGCTCTGGGTATTCCTGAGGGGTTGATACCGGTTCAACTTCTATGGGTAAACCTTGTCACCGACGGTCCTCCTGCAACTGCATTAGGTTTCAATCCACCTGATAAAGACATCATGAAGAAACCGCCTAGAAAGAGTGATGACTCACTGATTACTCCCTGGATTTTGTTCCGTTACCTGGTCATTGGCCTTTATGTGGGGATTGCCACGGTCGGCATCTTTGTCATATGGTACACACATGGATCTTTCATGGGCATTGACCTCACCGGAGATGGTCACACCCTTGTCAGCTACTCTCAGCTCTCAAACTGGGGCCAGTGCTCTACCTGGAACAACTTCACAGTTACGCCTTTCACTGCTGGAGCTAGGACTTTCACCTTCGATGACAATCCATGCGAGTACTTCCATGGTGGCAAAGTGAAGGCGACAACGCTCTCGCTGTCTGTCCTGGTGGCGATTGAGATGTTCAACTCACTCAACGCCCTCTCCGAAGACACTAGCCTCCTGAGGATGCCTCCTTGGGTAAACCCATGGCTGCTCCTCGCCATGTCAGTGTCGTTCGGGCTCCATTTCTTGATCCTCTACGTGCCGTTCCTCGCGCAAGTGTTTGGCATCGTGCCGCTCAGCTTGAACGAGTGGCTGCTGGTGTTGCTTGTTGCACTCCCGGTGGTGCTCATCGACGAGGTTCTCAAGTTTGTCGGAAGGTGTACAAGCTCATCAGGCCCCAAGAGGCGAACCAGGAAGCAGAAGGGCGAGTAAAATGCTAACAGTGATTCTTCAGACTCATCAGTAACAAAAGTCACTGAATTTGTTGTGATCAAGTAACAATGATCACCAAATGATGTTTATTCAATAGAAATATGTCCAATACAAGAAAGTTCAGGAAAGAGATTTTCTCAAAACAGGTCATCACTCTTTGGGAAGTTTATAACCTTTGCTGTTCTTTTATTCCTTGTCCTAAATGGTACTATACTGAGCTCACAGCAAACCAGCAGGCAGCAGCATTGTTCTGTTGGCAACATTTTGCTTCTGTGAATTATTATATATAGATGAAATATTTAGAT ]
[+] EMBL AU173089 [ CTCCTTGGGTAAACCCATGGCTGCTCCTCGCCATGTCAGTGTCGTTCGGGCTCCATTTCTTGATCCTCTACGTGCCGTTCCTCGCGCAAGTGTTTGGCATCGTGCCGCTCAGCTTGAACGAGTGGCTGCTGGTGTTGCTTGTTGCACTCCCGGTGGTGCTCATCGACGAGGTTCTCAAGTTTGTCGGAAGGTGTACAAGCTCATCAGGCCCCAAGAGGCGAACCAGGAAGCAGAAGGGCGAGTAAAATGCTAACAGTGATTCTTCAGACTCATCAGTAACAAAAGTCACTGAATTTGTTGTGATCAAGTAACAATGATCACCAAATGATGTTTATTCAATAGAAATATGTCCAATACAAGAAAGTTCAGGAAAGAGATTTTCTCAAAACAGGTCATCACTCTTTGGGAAGTTGATAACCTTTGCTGTTCTaaaaa ]
[+] EMBL AU030811 [ ATGTCAGTGTCGTTCGGGCTCCATTTCTTGATCCTCTACGTGCCGTTCCTCGCGCAAGTGTTTGGCATCGTGCCGCTCAGCTTGAACGAGTGGCTGCTGGTGTTGCTTGTTGCACTCCCGGTGGTGCTCATCGACGAGGTTCTCAAGTTTGTCGGAAGGTGTACAAGCTCATCAGGCCCCAAGAGGCGAACCAGGAAGCAGAAGGGCGAGTAAAATGCTAACAGTGATTCTTCAGACTCATCAGTAACAAAAGTCACTGAATTTGTTGTGATCAAGTAACAATGATCACCAAATGATGTTTATTCAATAGAAATATGTCCAATACAAGAAAGTTCAGGAAAGAGATTTTCTCAAAACAGGTCATCACTCTTTGGGAAGTTGATAACCTTTGCTGTTCTTTTATTCCTTGTCCTAAATGGTACTATACTGAGCTCACAGCAAACCAGCAGGCAGCAGCATTGTTCTGTTGGCAACATTTTGCTTCTGTGAATTATTATATATAGATGAAATATTTAGATCAAATTATACACATTTCTGCCTACCTTATTATGCTTCTGCTGTGTGGTTTCTGAGCTGGTTGATCTGGCAGGCCAATACTCAATTAATTCTCCCTGTGAATTGTCTCTAAAAAAAAAAAAAAAA]
[+] EMBL AU093123 [ GAATTTGTTGTGATCAAGTAACAATGATCNCCAAATGNTGTTTATTCAATNGAAATATGTCCAATACAAGAAAGTTCAGGAAAGAGATTTTCTCAAAACAGGTCATCACTCTTTGGGAAGTTGATAACCTTTGCTGTTCTTTTATTCCTTGTCCTAAATGGTACTATACTGAGCTCACNGCAAACCAGCAGGCAGCAGCATTGTTCTGTTGGCAACATTTTGCTTCTGTGAATTATTATATATAGATGAAATATTTAGATCAAAaa ]
consensusID : consensus_10794#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 894 fasta sequence
[GAAGTTGTTGCTATGACTGGAGATGGAGTTAATGACGCCCCTGCGCTAAAGCTGGCTGACATTGGAGTAGCAATGGGTATTACAGGCACTGAGGTTGCAAAAGAGGCCTCTGACATGGTTCTTGCTGATGACAATTTTAGTACCATTGTTGCGGCAGTTGGTGAAGGAAGGTCTATTTACAACAACATGAAAGCTTTCATCAGATACATGATTTCCTCAAACATTGGTGAAGTTGCGTCAATTTTCCTAACTTCTGCTCTGGGTATTCCTGAGGGGTTGATACCGGTTCAACTTCTATGGGTAAACCTTGTCACCGACGGTC-CTCCTGCAACTGCATTAGGTTTCAATCCACCTGATAAAGACATCATGAAGAAACCGCCT-AGAAAGAGTGATGACTCAC-TGATTACTCCCTGGATTTTGTTCCGTTACCT-GGTCATTGGCCTTTATGT-GGGGATTGCCAAGNT-CGGC-ATCTTT--GCCAT-AT-GGTACAAA-CAAGGAT-CTTTCATGGGCAATGNCCTCACCGGAGATGGTCACACCCTTGTCAGCTACTCTCAGCTCTCAAACTGGGGCCAGTGCTCTACCTGGAACAACTTCACAGTTACGCCTTTCACTGCTGGAGCTAGGACTTTCACCTTCGATGACAATCCATGCGAGTACTTCCATGGTGGCAAAGTGAAGGCGACAACGCTCTCGCTGTCTGTCCTGGTGGCGATTGAGATGTTCAACTCACTCAACGCCCTCTCCGAAGACACTAGCCTCCTGAGGATGCCTCCTTGGGTAAACCCATGGCTGCTCCTCGCCATGTCAGTGTCGTTCGGGCTCCATTTCTTGATCCTCTACGTGCCGTTCCTCGCGCAAGTGTTTGGCATCGTGCCGCTCAGCTTGAACGAGTGGCTG]
[+] EMBL AU095154 [GAAGTTGTTGCTATGACTGGAGATGGAGTTAATGACGCCCCTGCGCTAAAGCTGGCTGACATTGGAGTAGCAATGGGTATTACAGGCACTGAGGTTGCAAAAGAGGCCTCTGACATGGTTCTTGCTGATGACAATTTTAGTACCATTGTTGCGGCAGTTGGTGAAGGAAGGTCTATTTACAACAACATGAAAGCTTTCATCAGATACATGATTTCCTCAAACATTGGTGAAGTTGCGTCAATTTTCCTAACTTCTGCTCTGGGTATTCCTGAGGGGTTGATACCGGTTCAACTTCTATGGGTAAACCTTGTCACCGACGGTC CTCCTGCAACTGCATTAGGTTTCAATCCACCTGATAAAGACATCATGAAGAAACCGCCTAAGAAAGAGTGATGACTCAC TGATTACTCCCTGGATTTTGGTCCGGTACCTGGGTCATTGGCCTT ]
[+] EMBL AU173088 [ GACTGGAGATGGAGTTAATGACGCCCCTGCGCTAAAGCTGGCTGACATTGGAGTAGCAATGGGTATTACAGGCACTGAGGTTGCAAAAGAGGCCTCTGACATGGTTCTTGCTGATGACAATTTTAGTACCATTGTTGCGGCAGTTGGTGAAGGAAGGTCTATTTACAACAACATGAAAGCTTTCATCAGATACATGATTTCCTCAAACATTGGTGAAGTTGCGTCAATTTTCCTAACTTCTGCTCTGGGTATTCCTGAGGGGTTGATACCGGTTCAACTTCTATGGGTAAACCTTGTCACCGACGGTC CTCCTGCAACTGCATTAGGTTTCAATCCACCTGATAAAGACATCATGAAGAAACCGCCT AGAAAGA TGATGACTCAC TGATTACTCCCTGGATTTTGTTCCGTTACCT GGTCATTGGCC ]
[+] EMBL C28861 [ cntngtATGACAATTTTAGTACCATTGTTGCGGCAGTTGGTGAAGGAAGGTCTATTTACAACAACATGAAAGCTTTCATCAGATACATGATTTCCTCAAACATTGGTGAAGTTGCGTCAATTTTCCTAACTTCTGCTCTGGGTATTCCTGAGGGGTTGATACCGGTTCAACTTCTATGGGTAAACCTTGTCACCGACGGTC CTCCTGCAACTGCATTAGGTTTCAATCCACCTGATAAAGACATCATGAAGNAACCGCCT AGAAAGAGTGATGACTCACTTGATTACTCCCTGGATTTTGTTCCGTTANCT GGTCATTGGCCTTTATGTGGGGGATTGCCAAGNTCCGGCAATCTTTTGGCCATAATGGGTACAAANCAAGGATCCTTTCATGGGCAATGN ]
[+] EMBL CB681370 [ TCTATTCACAACAACATGAAAGCTTTCATCAGATACATGATTTCCTCAAACATTGGTGAAGTTGCGTCAATTTTCCTAACTTCTGCTCTGGGTATTCCTGAGGGGTTGATACCGGTTCAACTTCTATGGGTAAACCTTGTCACCGACGGTCACTCCTGCAACTGCATTAGGTTTCAATCCACCTGATAAAGACATCATGAAGAAACCGCCT AGAAAGAGTGATGACTCAC TGATTACTCCCTGGATTTTGTTCCGTTACCT GGTCATTGGCCTTTATGT GGGGATTGCCACGGT CGGC ATCTTT GTCAT AT GGTACACA CATGGAT CTTTCATGGGCATTGACCTCACCGGAGATGGTCACACCCTTGTCAGCTACTCTCAGCTCTCAAACTGGGGCCAGTGCTCTACCTGGAACAACTTCACAGTTACGCCTTTCACTGCTGGAGCTAGGACTTTCACCTTCGATGACAATCCATGCGAGTACTTCCATGGTGGCAAAGTGAAGGCGACAACGCTCTCGCTGTCTGTCCTGGTGGCGATTGAGATGTTCAACTCACTCAACGCCCTCTCCGAAGACACTAGCCTCCTGAGGATGCCTCCTTGGGTAAACCCATGGCTGCTCCTCGCCATGTCAGTGTCGTTCGGGCTCCATTTCTTGATCCTCTACGTGCCGTTCCTCGCGCAAGTGTTTGGCATCGTGCCGCTCAGCTTGAACGAGTGGCTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10794#0 ------------------------------------------------------------
consensus_10794#1 GAAGTTGTTGCTATGACTGGAGATGGAGTTAATGACGCCCCTGCGCTAAAGCTGGCTGAC 60
consensus_10794#0 ------------------------------------------------------------
consensus_10794#1 ATTGGAGTAGCAATGGGTATTACAGGCACTGAGGTTGCAAAAGAGGCCTCTGACATGGTT 120
consensus_10794#0 -----------------------------------------------GGATTCTAGCTGT 13
consensus_10794#1 CTTGCTGATGACAATTTTAGTACCATTGTTGCGGCAGTTGGTGAAGGAAGGTCTATTTAC 180
**** *
consensus_10794#0 CTTT-CTTCACTGCTG----CAGATACATGATTTCCTCAAACATTGGTGAAGTTGCGTCA 68
consensus_10794#1 AACAACATGAAAGCTTTCATCAGATACATGATTTCCTCAAACATTGGTGAAGTTGCGTCA 240
* * * *** ****************************************
consensus_10794#0 ATTTTCCTAACTTCTGCTCTGGGTATTCCTGAGGGGTTGATACCGGTTCAACTTCTATGG 128
consensus_10794#1 ATTTTCCTAACTTCTGCTCTGGGTATTCCTGAGGGGTTGATACCGGTTCAACTTCTATGG 300
************************************************************
consensus_10794#0 GTAAACCTTGTCACCGACGGTCCTCCTGCAACTGCATTAGGTTTCAATCCACCTGATAAA 188
consensus_10794#1 GTAAACCTTGTCACCGACGGTCCTCCTGCAACTGCATTAGGTTTCAATCCACCTGATAAA 360
************************************************************
consensus_10794#0 GACATCATGAAGAAACCGCCTAGAAAGAGTGATGACTCACTGATTACTCCCTGGATTTTG 248
consensus_10794#1 GACATCATGAAGAAACCGCCTAGAAAGAGTGATGACTCACTGATTACTCCCTGGATTTTG 420
************************************************************
consensus_10794#0 TTCCGTTACCTGGTCATTGGCCTTTATGTGGGGATTGCCACGGTCGGCATCTTTGTCATA 308
consensus_10794#1 TTCCGTTACCTGGTCATTGGCCTTTATGTGGGGATTGCCAAGNTCGGCATCTTTGCCATA 480
**************************************** * ************ ****
consensus_10794#0 TGGTACACACATGGATCTTTCATGGGCATTGACCTCACCGGAGATGGTCACACCCTTGTC 368
consensus_10794#1 TGGTACAAACAAGGATCTTTCATGGGCAATGNCCTCACCGGAGATGGTCACACCCTTGTC 540
******* *** **************** ** ****************************
consensus_10794#0 AGCTACTCTCAGCTCTCAAACTGGGGCCAGTGCTCTACCTGGAACAACTTCACAGTTACG 428
consensus_10794#1 AGCTACTCTCAGCTCTCAAACTGGGGCCAGTGCTCTACCTGGAACAACTTCACAGTTACG 600
************************************************************
consensus_10794#0 CCTTTCACTGCTGGAGCTAGGACTTTCACCTTCGATGACAATCCATGCGAGTACTTCCAT 488
consensus_10794#1 CCTTTCACTGCTGGAGCTAGGACTTTCACCTTCGATGACAATCCATGCGAGTACTTCCAT 660
************************************************************
consensus_10794#0 GGTGGCAAAGTGAAGGCGACAACGCTCTCGCTGTCTGTCCTGGTGGCGATTGAGATGTTC 548
consensus_10794#1 GGTGGCAAAGTGAAGGCGACAACGCTCTCGCTGTCTGTCCTGGTGGCGATTGAGATGTTC 720
************************************************************
consensus_10794#0 AACTCACTCAACGCCCTCTCCGAAGACACTAGCCTCCTGAGGATGCCTCCTTGGGTAAAC 608
consensus_10794#1 AACTCACTCAACGCCCTCTCCGAAGACACTAGCCTCCTGAGGATGCCTCCTTGGGTAAAC 780
************************************************************
consensus_10794#0 CCATGGCTGCTCCTCGCCATGTCAGTGTCGTTCGGGCTCCATTTCTTGATCCTCTACGTG 668
consensus_10794#1 CCATGGCTGCTCCTCGCCATGTCAGTGTCGTTCGGGCTCCATTTCTTGATCCTCTACGTG 840
************************************************************
consensus_10794#0 CCGTTCCTCGCGCAAGTGTTTGGCATCGTGCCGCTCAGCTTGAACGAGTGGCTGCTGGTG 728
consensus_10794#1 CCGTTCCTCGCGCAAGTGTTTGGCATCGTGCCGCTCAGCTTGAACGAGTGGCTG------ 894
******************************************************
consensus_10794#0 TTGCTTGTTGCACTCCCGGTGGTGCTCATCGACGAGGTTCTCAAGTTTGTCGGAAGGTGT 788
consensus_10794#1 ------------------------------------------------------------
consensus_10794#0 ACAAGCTCATCAGGCCCCAAGAGGCGAACCAGGAAGCAGAAGGGCGAGTAAAATGCTAAC 848
consensus_10794#1 ------------------------------------------------------------
consensus_10794#0 AGTGATTCTTCAGACTCATCAGTAACAAAAGTCACTGAATTTGTTGTGATCAAGTAACAA 908
consensus_10794#1 ------------------------------------------------------------
consensus_10794#0 TGATCACCAAATGATGTTTATTCAATAGAAATATGTCCAATACAAGAAAGTTCAGGAAAG 968
consensus_10794#1 ------------------------------------------------------------
consensus_10794#0 AGATTTTCTCAAAACAGGTCATCACTCTTTGGGAAGTTGATAACCTTTGCTGTTCTTTTA 1028
consensus_10794#1 ------------------------------------------------------------
consensus_10794#0 TTCCTTGTCCTAAATGGTACTATACTGAGCTCACAGCAAACCAGCAGGCAGCAGCATTGT 1088
consensus_10794#1 ------------------------------------------------------------
consensus_10794#0 TCTGTTGGCAACATTTTGCTTCTGTGAATTATTATATATAGATGAAATATTTAGATCAAA 1148
consensus_10794#1 ------------------------------------------------------------
consensus_10794#0 TTATACACATTTCTGCCTACCTTATTATGCTTCTGCTGTGTGGTTTCTGAGCTGGTTGAT 1208
consensus_10794#1 ------------------------------------------------------------
consensus_10794#0 CTGGCAGGCCAATACTCAATTAATTCTCCCTGTGAATTGTCTCTAAAAAAAAAAAAAAAA 1268
consensus_10794#1 ------------------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||