These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10798#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 2428 fasta sequence [CACCCCGAATCCACCACCCCACGCCAAGCCCGCTCGCCGCCGCCGCCCGAGCGCGCGCGCGTACGGGCACGGCGGGCGTACGACGCCGGAGGTGGGGATCGAGCGTGCCCCCTCCTCCGTCGCGGCGGGCGACGTCGGACGTCGTCGGTCGTAGCTTGCCTTCGTTTCGTTGTCGGGTTTTCGGTGCTGCTGCTGCTGCTGGTGGTGGTCGAGCAAAGGCCGGTGGCGGATCGCCGGCGGTCCCGTCCGCGGGAGGGGCGCGGGTGACGCGGTGATCAGGTGATCGGAGCCCCACCCTTCGTTTTCTCCGCGCAATTTTAGCACCGACGCGGGTGGTGGTGGTGGTGGTGGTGGTGGGCATTGGCATTTCGTCCCCTTCCCCACGATAGAGACGCGGAGCGTGTGCCCCCCCTCTCGATCTTGCCGCCGCTCGTAATCCCCGCCTGATGCCGGAGAACCTGCATTTTTTTTTGAGCCATTCCAGGCTTACGTTCTAATGCGACGCTGCTAGCGATAGAAAACCCAGTGGGGGGTCTGTGAGAATCATCGCTTGATCTCCGATCTATCCTGTTAACCATTCCTGTGAGGTTAGGAGGTTTCTGGTTTAGGGGCCTGAGTGAGGAGGAGGGTACTCAAACGGCTGGACCTGCAATCGATCTGCTAACTTGGCTAACTTTGATAAAAGTGTCCCTTCCAACATTGCCATTTGGAGCTCTATGGGTTGGTTGACCAAATTTTTTAGAGGTTCAACCCACAAAATCTCGGAAGGGCAATACCACAGCAAACCCGCGGAGGAGACGATATGGAATGGACCCTCTAATTCCGCAGTTGTGACGGGTGTCCCGTCAGAATTTGACAATGAAGATATCGCTCGTGCTATATCACTCTCTCTATTAGAGGAGGAACAAAGAAAGGCAAAGGCAATAGAAAAGGACATGCATTTGGAGGAGGATGAACAACTTGCAAGAGCTATCCAGGAAAGTTTGAATGTTGAATCGCCTCCTCGTGCTCGTGAAAATGGCAACGCCAATGGTGGCAATATGTATCAACCACTGCCATTTATGTTTTCTTCTGGATTCAGGACTTGTGCCGGATGTCACAGTGAGATTGGTCATGGGCGTTTCCTTAGTTGCATGGGAGCTGTTTGGCATCCAGAATGTTTTCGCTGTCATGCTTGTAATCAACCAATATATGACTATGAGTTCTCCATGTCGGGAAACCATCCATACCATAAAACATGCTACAAGGAGCGCTTTCACCCAAAATGTGATGTCTGCAAGCAATTTATTCCTACAAATATGAATGGCCTGATTGAATATAGAGCACATCCTTTCTGGTTACAAAAATACTGTCCATCACATGAGGTGGACGGTACTCCAAGATGCTGTAGTTGTGAAAGAATGGAGCCAAGGGAATCAAGATATGTATTGCTGGACGATGGTCGCAAACTCTGCCTGGAGTGCCTTGATTCTGCAGTTATGGATACGAGCGAGTGCCAACCTCTTTATCTTGAAATACAGGAATTTTATGAAGGCCTAAATATGAAAGTGGAACAACAAGTTCCCTTGCTTCTTGTAGAAAGACAGGCTTTAAATGAAGCCATGGAAGGAGAGAAGACTGGTCACCACCATCTTCCAGAAACAAGAGGTTTATGCTTATCAGAAGAGCAAACTGTCAGCACGATATTGAGGAGACCAAGAATGGCTGGAAATAAAGTTATGGAAATGATAACGGAGCCATATAGGTTGACTCGTCGATGTGAAGTGACTGCAATTCTCATTCTTTATGGTCTCCCAAGATTGTTGACAGGTTCAATTTTAGCTCATGAGATGATGCATGCGTGGTTGCGACTTAAAGGATATCGCACACTTAGTCCAGACGTAGAAGAGGGCATATGCCAAGTTCTTGCTCACATGTGGATTGAGTCAGAGATCATTGCAGGATCAGGCAGTAATGGTGCTTCAACGTC-TTCATCCTCATCAGCATCCACATCATCGAAAAAGGGGGGAAGATCTCAGTTTGAGCGAAAGCTTGGTGATTTTTTCAAGCACCAAATTGAGT-CAGATACCTCAATGG-CCTATGG-CGATGGTTTTAGAGCT-GGCAACC-GAGCTGTTCTT-CAGTATGGTCTAAAGCGCACCCTTGAGCATATCCGGTTAACAGGGACTTTCCCA-TTTTGAAATTTCATAGATTCGTCTTTTGATGGAAGTTATACACGATCGATTTGTCA-TTAAGCGTCCATTTACAGGAAAAGAAAGCAATTTTGAGATGTGCAATTGTACAAACAATCTTTTCAGTTACTTTTGGAAGGGCTAACTGACGACATTGATTAAATTGTGATATGGTTAGCCCAACCAATCACACATGTATGGCATTCAGAAATTCTAATGGAAACAGCGGTATTTTTTATGTGAAAAAAA--AAAAAAAAATT] [+] EMBL AK105719 [CACCCCGAATCCACCACCCCACGCCAAGCCCGCTCGCCGCCGCCGCCCGAGCGCGCGCGCGTACGGGCACGGCGGGCGTACGACGCCGGAGGTGGGGATCGAGCGTGCCCCCTCCTCCGTCGCGGCGGGCGACGTCGGACGTCGTCGGTCGTAGCTTGCCTTCGTTTCGTTGTCGGGTTTTCGGTGCTGCTGCTGCTGCTGGTGGTGGTCGAGCAAAGGCCGGTGGCGGATCGCCGGCGGTCCCGTCCGCGGGAGGGGCGCGGGTGACGCGGTGATCAGGTGATCGGAGCCCCACCCTTCGTTTTCTCCGCGCAATTTTAGCACCGACGCGGGTGGTGGTGGTGGTGGTGGTGGTGGGCATTGGCATTTCGTCCCCTTCCCCACGATAGAGACGCGGAGCGTGTGCCCCCCCTCTCGATCTTGCCGCCGCTCGTAATCCCCGCCTGATGCCGGAGAACCTGCATTTTTTTTTGAGCCATTCCAGGCTTACGTTCTAATGCGACGCTGCTAGCGATAGAAAACCCAGTGGGGGGTCTGTGAGAATCATCGCTTGATCTCCGATCTATCCTGTTAACCATTCCTGTGAGGTTAGGAGGTTTCTGGTTTAGGGGCCTGAGTGAGGAGGAGGGTACTCAAACGGCTGGACCTGCAATCGATCTGCTAACTTGGCTAACTTTGATAAAAGTGTCCCTTCCAACATTGCCATTTGGAGCTCTATGGGTTGGTTGACCAAATTTTTTAGAGGTTCAACCCACAAAATCTCGGAAGGGCAATACCACAGCAAACCCGCGGAGGAGACGATATGGAATGGACCCTCTAATTCCGCAGTTGTGACGGGTGTCCCGTCAGAATTTGACAATGAAGATATCGCTCGTGCTATATCACTCTCTCTATTAGAGGAGGAACAAAGAAAGGCAAAGGCAATAGAAAAGGACATGCATTTGGAGGAGGATGAACAACTTGCAAGAGCTATCCAGGAAAGTTTGAATGTTGAATCGCCTCCTCGTGCTCGTGAAAATGGCAACGCCAATGGTGGCAATATGTATCAACCACTGCCATTTATGTTTTCTTCTGGATTCAGGACTTGTGCCGGATGTCACAGTGAGATTGGTCATGGGCGTTTCCTTAGTTGCATGGGAGCTGTTTGGCATCCAGAATGTTTTCGCTGTCATGCTTGTAATCAACCAATATATGACTATGAGTTCTCCATGTCGGGAAACCATCCATACCATAAAACATGCTACAAGGAGCGCTTTCACCCAAAATGTGATGTCTGCAAGCAATTTATTCCTACAAATATGAATGGCCTGATTGAATATAGAGCACATCCTTTCTGGTTACAAAAATACTGTCCATCACATGAGGTGGACGGTACTCCAAGATGCTGTAGTTGTGAAAGAATGGAGCCAAGGGAATCAAGATATGTATTGCTGGACGATGGTCGCAAACTCTGCCTGGAGTGCCTTGATTCTGCAGTTATGGATACGAGCGAGTGCCAACCTCTTTATCTTGAAATACAGGAATTTTATGAAGGCCTAAATATGAAAGTGGAACAACAAGTTCCCTTGCTTCTTGTAGAAAGACAGGCTTTAAATGAAGCCATGGAAGGAGAGAAGACTGGTCACCACCATCTTCCAGAAACAAGAGGTTTATGCTTATCAGAAGAGCAAACTGTCAGCACGATATTGAGGAGACCAAGAATGGCTGGAAATAAAGTTATGGAAATGATAACGGAGCCATATAGGTTGACTCGTCGATGTGAAGTGACTGCAATTCTCATTCTTTATGGTCTCCCAAGATTGTTGACAGGTTCAATTTTAGCTCATGAGATGATGCATGCGTGGTTGCGACTTAAAGGATATCGCACACTTAGTCCAGACGTAGAAGAGGGCATATGCCAAGTTCTTGCTCACATGTGGATTGAGTCAGAGATCATTGCAGGATCAGGCAGTAATGGTGCTTCAACGTC TTCATCCTCATCAGCATCCACATCATCGAAAAAGGGGGGAAGATCTCAGTTTGAGCGAAAGCTTGGTGATTTTTTCAAGCACCAAATTGAGT CAGATACCTCAATGG CCTATGG CGATGGTTTTAGAGCT GGCAACC GAGCTGTTCTT CAGTATGGTCTAAAGCGCACCCTTGAGCATATCCGGTTAACAGGGACTTTCCCA TTTTGAAATTTCATAGATTCGTCTTTTGATGGAAGTTATACACGATCGATTTGTCA TTAAGCGTCCATTTACAGGAAAAGAAAGCAATTCTGAGATGTGCAATTGTACAAACAATCTTTTCAGTTACTTTTGGAAGGGCTAACTGACGACATTGATTAAATTGTGATATGGTTAGCCCAACCAATCACACATGTATGGCGTTCAGAAATTCTAATGGAAACAGCGGTATTT ] [-] EMBL CB677885 [ TGGAAATGATAACGGAGCCATATAGGTTGACTCGTCGATGTGAAGTGACTGCAATTCTCATTCTTTATGGTCTCCCAAGATTGTTGACAGGTTCAATTTTAGCTCATGAGATGATGCATGCGTGGTTGCGACTTAAAGGATATCGCACACTTAGTCCAGACGTAGAAGAGGGCATATGCCAAGTTCTTGCTCACATGTGGATTGAGTCAGAGATCATTGCAGGATCAGGCAGTAATGGTGCTTCAACGTC TTCATCCTCATCAGCATCCACATCATGGAAAAAGGGGGGAAGATTTCAGTTTGAGCGAAAGCTTGGTGATTTTTTCAAGCACCAAATTGAGT CAGATACCTCAATGG CCTATGG CGATGGTTTTAGAGCT GGCAACC GAGCTGTTTTT CAGTATGGTTTAAAGCGCACCCTTGAGCATATCCGGTTAACAGGGACTTTCCCA TTTTGAAATTTCATAGATTCGTCTTTTGATGGAAGTTATACACGATCGATTTGTCA TTAAGCGTCCATTTACAGGAAAAGAAAGCAATTTTGAGATGTGCAATTGTACAAACAATCTTTTCAGTTACTTTTGGAAGGGCTAACTGACGACATTGATTAAATTGTGATATGGTTAGCCCAACCAATCACACATGTATGGCATTCAGAAATTTTAATGGAAACAGCGGTATTTTTTATGTGAAAGAAATTAATAAGAAATT] [+] EMBL AU030799 [ TGACTGCAATTCTCATTCTTTATGGTCTCCCAAGATTGTTGACAGGTTCAATTTTAGCTCATGAGATGATGCATGCGTGGTTGCGACTTAAAGGATATCGCACACTTATTCCAGACGTAGAAGAGGGCATATGCCAAGTTCTTGCTCACATGTGGATTGAGTCAGAGATCATTGCAGGATCAGGCAGTAATGGTGCTTCAACGTC TTCATCCTCATCAGCATCCACATCATCGAAAAAGGGGGGAAGATCTCAGTTTGAGCGAAAGCTTGGTGATTTTTTCAAGCACCAAATTGAGT CAGATACCTCAATGG CCTATGG CGATGGTTTTAGAGCT GGCAACC GAGCTGTTCTT CAGTATGGTCTAAAGCGCACCCTTGAGCATATCCGGTTAACAGGGACTTTCCCA TTTTGAAATTTCATAGATTCGTCTTTTGATGGAAGTTATACACGATCGATTTGTCA TTAAGCGTCCATTTACAGGAAAAGAAAGCAATTTTGAGATGTGCAATTGTACAAACAATCTTTTCAGTTACTTTTGGAAGGGCTAACTGACGACATTGATTAAATTGTGATATGGTTAGCCCAACCAATCACACATGTATGGCATTCAGAAATTCTAATGGAAACAGCGGTATTTTTTATGTGACAAAAA AAAAAAAAA ] [+] EMBL BM038044 [ AGAGATCATCGCAGGATCA GCAGTAATGGTGCTTCAACGTCGTTCATCCTCATCAGCATCCACATCATCGAAAAAGGGGGGAAGATCTCAGTTTGAGCGAAAGCTTGGTGATTTTTTCAAGCACCAAATTGAGT CAGATACCTCAATGG CCTATGG CGATGGTTTTAGAGCT GGCAACC GAGCTGTTCTT CAGTATGGTCTAAAGCGCACCCTTGAGCATATCCGGTTAACAGGGACTTTCCCACTTTTGAAATGTCATAGATTCGTCTTTTGATGGAAGTTATACACGATCGATTTGTCACTTAAGCGTCCATTTACAGGAAAAGAAAGCCATTTTGAGATGTGCCATTGTAC AACAATCTTTTCAGTTACTTTTGGAAGGGCTAACTGACGACATTGATTAAATTGTGATATGGTTAGCCCAACC ATCACACATGTATGGCATTCAGAAATTCTAATGGAAACANCAGTATTTTTTA AAAAAAA AA ] [+] EMBL C99110 [ AGTCCAGNTCCCTCCATGGCCCTTTGGCCGNGGGTTTTAGAGCTGGGCAACCGGNGCTGTTCTTCCAGTATGGTCTAAAGCGC CCCTTGAGCATACCCGGTTAACAGGGACTTTCCCA TTTTGAAATTTCATAGATTCGTCTTTTGATGGAAGTTATACACGATCGATTTGTCA TTAAGCGTCCATTTACAGGAAAAGAAAGCAATTTTGAGATGTGCAATTGTACAAACAATCTTTTCAGTTACTTTTGGAAGGGCTAACTGACGACATTGATTAAATTGTGATATGGTTAGCCCAACCAATCACACATGTATGGCATTCAGAAATTCTAATGGAAACAGCGGTATTTTTTA AAAAAAA AAAAAAA ] consensusID : consensus_10798#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 2084 fasta sequence [CCTGCCTCCTCCTGCCGTGCCACAAAAAGCAAGGCAAAGCAGCAGCGAGGAGGCGAGACAGATTCCCAAATCCCGCACAACCCCACCCCGAATCCACCACCCCACGCCAAGCCCGCTCGCCGCCGCCGCCCGAGCGCGCGCGCGTACGGGCACGGCGGGCGTACGACGCCGGAGGTGGGGATCGAGCGTGCCCCCTCCTCCGTCGCGGCGGGCGACGTCGGACGTCGTCGGTCGTAGCTTGCCTTCGTTTCGTTGTCGGGTTTTCGGTGCTGCTGCTGCTGCTGGTGGTGGTCGAGCAAAGGCCGGTGGCGGATCGCCGGCGGTCCCGTCCGCGGGAGGGGCGCGGGTGACGCGGTGATCAGATAAAAGTGTCCCTTCTAACATTGCCATTTGGAGCTCTATGGGTTGGTTGACCAAATTTTTTAGAGGTTCAACCCACAAAATCTCGGAAGGGCAATACCACAGCAAACCCGCGGAGGAGACGATATGGAATGGACCCTCTAATTCCGCAGTTGTGACGGATGTCCCGTCAGAATTTGACAATGAAGATATCGCTCGTGCTATATCACTCTCTCTATTAGAGGAGGAACAAAGAAAGGCAAAGGCAATAGAAAAGGACATGCATTTGGAGGAGGATGAACAACTTGCAAGAGCTATCCAGGAAAGTTTGAATGTTGAATCGCCTCCTCGTGCTCGTGAAAATGGCAACGCCAATGGTGGCAATATGTATCAACCACTGCCATTTATGTTTTCTTCTGGATTCAGGACTTGTGCCGGATGTCACAGTGAGATTGGTCATGGGCGTTTCCTTAGTTGCATGGGAGCTGTTTGGCATCCAGAATGTTTTCGCTGTCATGCTTGTAATCAACCAATATATGACTATGAGTTCTCCATGTCGGGAAACCATCCATACCATAAAACATGCTACAAGGAGCGCTTTCACCCAAAATGTGATGTCTGCAAGCAATTTATTCCTACAAATATGAATGGCCTGATTGAATATAGAGCACATCCTTTCTGGTTACAAAAATACTGTCCATCACATGAGGTGGACGGTACTCCAAGATGCTGTAGTTGTGAAAGAATGGAGCCAAGGGAATCAAGATATGTATTGCTGGACGATGGTCGCAAACTCTGCCTGGAGTGCCTTGATTCTGCAGTTATGGATACGAGCGAGTGCCAACCTCTTTATCTTGAAATACAGGAATTTTATGAAGGCCTAAATATGAAAGTGGAACAACAAGTTCCCTTGCTTCTTGTAGAAAGACAGGCTTTAAATGAAGCCATGGAAGGAGAGAAGACTGGTCACCACCATCTTCCAGAAACAAGATGTTTATGCTTATCAGAAGAGCAAACTGTCAGCACGATATTGAGGAGACCAAGAATGGCTGGAAATAAAGTTATGGAAATGATAACGGAGCCATATAGGTTGACTCGTCGATGTGAAGTGACTGCAATTCTCATTCTTTATGGTCTCCCAAGATTGTTGACAGGTTCAATTTTAGCTCATGAGATGATGCATGCGTGGTTGCGACTTAAAGGATATCGCACACTTAGTCCAGACGTAGAAGAGGGCATATGCCAAGTTCTTGCTCACATGTGGATTGAGTCAGAGATCATTGCAGGATCAGGCAGTAATGGTGCTTCAACGTCTTCATCCTCATCAGCATCCACATCATCGAAAAAGGGGGGAAGATCTCAGTTTGAGCGAAAGCTTGGTGATTTTTTCAAGCACCAAATTGAGTCAGATACCTCAATGGCCTATGGCGATGGTTTTAGAGCTGGCAACC-GAGCTGTTCTT-CAGTAT-GGTCTAAAGCGCA-CCCTTGAGCATATCCGGTTAACAGGGACTTTCCCATTTTGAAATTTCATAGATTCGTCTTTTGATGGAAGTTATACACGATCGATTTGTCATTAAGCGTCCATTTACAGGAAAAGAAAGCAATTTTGAGATGTGCAATTGTACAAACAATCTTTTCAGTTACTTTTGGAAGGGCTAACTGACGACATTGATTAAATTGTGATATGGTTAGCCCAACCAATCACACATGTATGGCATTCAGAAATTCTAATGGAAACAGCGGTAT] [+] EMBL AK069056 [CCTGCCTCCTCCTGCCGTGCCACAAAAAGCAAGGCAAAGCAGCAGCGAGGAGGCGAGACAGATTCCCAAATCCCGCACAACCCCACCCCGAATCCACCACCCCACGCCAAGCCCGCTCGCCGCCGCCGCCCGAGCGCGCGCGCGTACGGGCACGGCGGGCGTACGACGCCGGAGGTGGGGATCGAGCGTGCCCCCTCCTCCGTCGCGGCGGGCGACGTCGGACGTCGTCGGTCGTAGCTTGCCTTCGTTTCGTTGTCGGGTTTTCGGTGCTGCTGCTGCTGCTGGTGGTGGTCGAGCAAAGGCCGGTGGCGGATCGCCGGCGGTCCCGTCCGCGGGAGGGGCGCGGGTGACGCGGTGATCAGATAAAAGTGTCCCTTCTAACATTGCCATTTGGAGCTCTATGGGTTGGTTGACCAAATTTTTTAGAGGTTCAACCCACAAAATCTCGGAAGGGCAATACCACAGCAAACCCGCGGAGGAGACGATATGGAATGGACCCTCTAATTCCGCAGTTGTGACGGATGTCCCGTCAGAATTTGACAATGAAGATATCGCTCGTGCTATATCACTCTCTCTATTAGAGGAGGAACAAAGAAAGGCAAAGGCAATAGAAAAGGACATGCATTTGGAGGAGGATGAACAACTTGCAAGAGCTATCCAGGAAAGTTTGAATGTTGAATCGCCTCCTCGTGCTCGTGAAAATGGCAACGCCAATGGTGGCAATATGTATCAACCACTGCCATTTATGTTTTCTTCTGGATTCAGGACTTGTGCCGGATGTCACAGTGAGATTGGTCATGGGCGTTTCCTTAGTTGCATGGGAGCTGTTTGGCATCCAGAATGTTTTCGCTGTCATGCTTGTAATCAACCAATATATGACTATGAGTTCTCCATGTCGGGAAACCATCCATACCATAAAACATGCTACAAGGAGCGCTTTCACCCAAAATGTGATGTCTGCAAGCAATTTATTCCTACAAATATGAATGGCCTGATTGAATATAGAGCACATCCTTTCTGGTTACAAAAATACTGTCCATCACATGAGGTGGACGGTACTCCAAGATGCTGTAGTTGTGAAAGAATGGAGCCAAGGGAATCAAGATATGTATTGCTGGACGATGGTCGCAAACTCTGCCTGGAGTGCCTTGATTCTGCAGTTATGGATACGAGCGAGTGCCAACCTCTTTATCTTGAAATACAGGAATTTTATGAAGGCCTAAATATGAAAGTGGAACAACAAGTTCCCTTGCTTCTTGTAGAAAGACAGGCTTTAAATGAAGCCATGGAAGGAGAGAAGACTGGTCACCACCATCTTCCAGAAACAAGATGTTTATGCTTATCAGAAGAGCAAACTGTCAGCACGATATTGAGGAGACCAAGAATGGCTGGAAATAAAGTTATGGAAATGATAACGGAGCCATATAGGTTGACTCGTCGATGTGAAGTGACTGCAATTCTCATTCTTTATGGTCTCCCAAGATTGTTGACAGGTTCAATTTTAGCTCATGAGATGATGCATGCGTGGTTGCGACTTAAAGGATATCGCACACTTAGTCCAGACGTAGAAGAGGGCATATGCCAAGTTCTTGCTCACATGTGGATTGAGTCAGAGATCATTGCAGGATCAGGCAGTAATGGTGCTTCAACGTCTTCATCCTCATCAGCATCCACATCATCGAAAAAGGGGGGAAGATCTCAGTTTGAGCGAAAGCTTGGTGATTTTTTCAAGCACCAAATTGAGTCAGATACCTCAATGGCCTATGGCGATGGTTTTAGAGCTGGCAACC GAGCTGTTCTT CAGTAT GGTCTAAAGCGCA CCCTTGAGCATATCCGGTTAACAGGGACTTTCCCATTTTGAAATTTCATAGATTCGTCTTTTGATGGAAGTTATACACGATCGATTTGTCATTAAGCGTCCATTTACAGGAAAAGAAAGCAATTTTGAGATGTGCAATTGTACAAACAATCTTTTCAGTTACTTTTGGAAGGGCTAACTGACGACATTGATTAAATTGTGATATGGTTAGCCCAACCAATCACACATGTATGGCATTCAGAAATTCTAATGGAAACAGCGGTAT] [+] EMBL C99109 [ AGAATGGCTGGAAATAAAGTTATGGAAATGATAACGGAGCCATATAGGTTGACTCGTCGATGTGAAGTGACTGCAATTCTCATTCTTTATGGTCTCCCAAGATTGTTGACAGGTTCAATTTTAGCTCATGAGATGATGCATGCGTGGTTGCGACTTAAAGGATATCGCACACTTAGTCCAGACGTAGAAGAGGGCATATGCCAAGTTCTTGCTCACATGTGGATTGAGTCAGAGATCATTGCAGGATCAGGCAGTAATGGTGCTTCAACGTCTTCATCCTCATCAGCATCCACATCATCGAAAAAGGGGGGAAGATCTCAGTTTGAGCGAAA CTTGGTGA TTTTTCAAGCACC AATTGAGTCAGATACCTCCATGGCCTATGGCGATGG TTTAGAGCTGGCAACCGGAGCTG TCTTCCAGTATGGGTCTAAAGCGCANCCCTn ] consensusID : consensus_10798#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 446 fasta sequence [AGNGAACGCGTGGGTGGACTATGAGTTCTCCATGTCGGGAAACCATCCATACCATAAAACATGCTACAAGGAGCGCTTTCACCCAAAATGTGATGTCTGCAAGCAATTTATTCCTACAAATATGAATGGCCTGATTGAATATAGAGCACATCCTTTCTGGTTACAAAAATACTGTCCATCACATGAGGTGGACGGTACTCCAAGATGCTGTAGTTGTGAAAGAATGGAGCCAAGGGAATCAAGATATGTATTGCTGGACGATGGTCGCAAACTCTGCCTGGAGTGCCTTGATTCTGCAGTTATGGATACGAGCGAGTGCCAACCTCTTTATCTTGAAATACAGGAATTTTATGAAGGCCTAAATATGANAGTGGACAACAAGTTCCCTTGCTTCTTGTAGAAAGACAGGCTTTAAATGAAGCCCTGGAAGGAGAGAAGACTGGTCA] [+] EMBL AU095148 [AGNGAACGCGTGGGTGGACTATGAGTTCTCCATGTCGGGAAACCATCCATACCATAAAACATGCTACAAGGAGCGCTTTCACCCAAAATGTGATGTCTGCAAGCAATTTATTCCTACAAATATGAATGGCCTGATTGAATATAGAGCACATCCTTTCTGGTTACAAAAATACTGTCCATCACATGAGGTGGACGGTACTCCAAGATGCTGTAGTTGTGAAAGAATGGAGCCAAGGGAATCAAGATATGTATTGCTGGACGATGGTCGCAAACTCTGCCTGGAGTGCCTTGATTCTGCAGTTATGGATACGAGCGAGTGCCAACCTCTTTATCTTGAAATACAGGAATTTTATGAAGGCCTAAATATGANAGTGGACAACAAGTTCCCTTGCTTCTTGTAGAAAGACAGGCTTTAAATGAAGCCCTGGAAGGAGAGAAGACTGGTCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10798#1 ------------------------------------------------------------ consensus_10798#2 ------------------------------------------------------------ consensus_10798#0 CACCCCGAATCCACCACCCCACGCCAAGCCCGCTCGCCGCCGCCGCCCGAGCGCGCGCGC 60 consensus_10798#1 ------------------------------------------------------------ consensus_10798#2 ------------------------------------------------------------ consensus_10798#0 GTACGGGCACGGCGGGCGTACGACGCCGGAGGTGGGGATCGAGCGTGCCCCCTCCTCCGT 120 consensus_10798#1 ------------------------------------------------------------ consensus_10798#2 ------------------------------------------------------------ consensus_10798#0 CGCGGCGGGCGACGTCGGACGTCGTCGGTCGTAGCTTGCCTTCGTTTCGTTGTCGGGTTT 180 consensus_10798#1 ------------------------------------------------------------ consensus_10798#2 ------------------------------------------------------------ consensus_10798#0 TCGGTGCTGCTGCTGCTGCTGGTGGTGGTCGAGCAAAGGCCGGTGGCGGATCGCCGGCGG 240 consensus_10798#1 -------------------------------------------------------CCTGC 5 consensus_10798#2 ------------------------------------------------------------ consensus_10798#0 TCCCGTCCGCGGGAGGGGCGCGGGTGACGCGGTGATCAGGTGATCGGAGCCCCACCCTTC 300 consensus_10798#1 CTCCTCCTGCCGTGCCACAAAAAGCAAGGCAAA--GCAGCAGCGA-GGAGGCGAGACAGA 62 consensus_10798#2 ------------------------------------------------------------ consensus_10798#0 GTTTTCTCCGCGCAATTTTAGCACCGACGCGGGTGGTGGTGGTGGTGGTGGTGGTGGGCA 360 consensus_10798#1 TTCCCAAATCCCGCACAACCCCACCCCGAATCCACCACCCCACGCCAAGCCCGCTCGCCG 122 consensus_10798#2 ------------------------------------------------------------ consensus_10798#0 TTGGCATTTCGTCCCCTTCCCCACGATAGAGACGCGGAGCGTGTGCCCCCCCTCTCGATC 420 consensus_10798#1 CCGCCGCCCGAGCGCGCGCGCGTACGGGCACGGCGGGCGTACGACGCCGGAGGTGGGGAT 182 consensus_10798#2 ------------------------------------------------------------ consensus_10798#0 TTGCCGCCGCTCGTAATCCCCGCCTGATGCCGGAGAACCTGCATTTTTTTTTGAGCCATT 480 consensus_10798#1 CGAG-CGTGCCCCCTCCTCCGTCGCGGCGGGCGACGTCGGAC---GTCGTCGGTCGTAGC 238 consensus_10798#2 ------------------------------------------------------------ consensus_10798#0 CCAGGCTTACGTTCTAATGCGACGCTGCTAGCGATAGAAAACCCAGTGGGGGGTCTGTGA 540 consensus_10798#1 TTGCCTTCGTTTCGTTGTCGGGTTTTCGGTGCTGCTGCTGCTGCT------GGTGGTGGT 292 consensus_10798#2 ------------------------------------------------------------ consensus_10798#0 GAATCATCGCTTGATCTCCGATCTATCCTGTTAACCATTCCTGTGAGGTTAGGAGGTTTC 600 consensus_10798#1 CGAGCAAAGGCCGGTGGCGGATCGCCGGCGGTCCCGTCCGCGGGAGGGGCG------CGG 346 consensus_10798#2 ------------------------------------------------------------ consensus_10798#0 TGGTTTAGGGGCCTGAGTGAGGAGGAGGGTACTCAAACGGCTGGACCTGCAATCGATCTG 660 consensus_10798#1 GTGACGCGGTGA--TCAGATAAAAGTGTCCCTTCTAACATTGCCATTTGGAGCTCTATGG 404 consensus_10798#2 ------------------------------------------------------------ consensus_10798#0 CTAACTTGGCTAACTTTGATAAAAGTGTCCCTTCCAACATTGCCATTTGGAGCTCTATGG 720 consensus_10798#1 GTTGGTTGACCAAATTTTTTAGAGGTTCAACCCACAAAATCTCGGAAGGGCAATACCACA 464 consensus_10798#2 ------------------------------------------------------------ consensus_10798#0 GTTGGTTGACCAAATTTTTTAGAGGTTCAACCCACAAAATCTCGGAAGGGCAATACCACA 780 consensus_10798#1 GCAAACCCGCGGAGGAGACGATATGGAATGGACCCTCTAATTCCGCAGTTGTGACGGATG 524 consensus_10798#2 ------------------------------------------------------------ consensus_10798#0 GCAAACCCGCGGAGGAGACGATATGGAATGGACCCTCTAATTCCGCAGTTGTGACGGGTG 840 consensus_10798#1 TCCCGTCAGAATTTGACAATGAAGATATCGCTCGTGCTATATCACTCTCTCTATTAGAGG 584 consensus_10798#2 ------------------------------------------------------------ consensus_10798#0 TCCCGTCAGAATTTGACAATGAAGATATCGCTCGTGCTATATCACTCTCTCTATTAGAGG 900 consensus_10798#1 AGGAACAAAGAAAGGCAAAGGCAATAGAAAAGGACATGCATTTGGAGGAGGATGAACAAC 644 consensus_10798#2 ------------------------------------------------------------ consensus_10798#0 AGGAACAAAGAAAGGCAAAGGCAATAGAAAAGGACATGCATTTGGAGGAGGATGAACAAC 960 consensus_10798#1 TTGCAAGAGCTATCCAGGAAAGTTTGAATGTTGAATCGCCTCCTCGTGCTCGTGAAAATG 704 consensus_10798#2 ------------------------------------------------------------ consensus_10798#0 TTGCAAGAGCTATCCAGGAAAGTTTGAATGTTGAATCGCCTCCTCGTGCTCGTGAAAATG 1020 consensus_10798#1 GCAACGCCAATGGTGGCAATATGTATCAACCACTGCCATTTATGTTTTCTTCTGGATTCA 764 consensus_10798#2 ------------------------------------------------------------ consensus_10798#0 GCAACGCCAATGGTGGCAATATGTATCAACCACTGCCATTTATGTTTTCTTCTGGATTCA 1080 consensus_10798#1 GGACTTGTGCCGGATGTCACAGTGAGATTGGTCATGGGCGTTTCCTTAGTTGCATGGGAG 824 consensus_10798#2 ------------------------------------------------------------ consensus_10798#0 GGACTTGTGCCGGATGTCACAGTGAGATTGGTCATGGGCGTTTCCTTAGTTGCATGGGAG 1140 consensus_10798#1 CTGTTTGGCATCCAGAATGTTTTCGCTGTCATGCTTGTAATCAACCAATATATG-ACTAT 883 consensus_10798#2 --------------------------------------AGNGAACGCGTGGGTGGACTAT 22 consensus_10798#0 CTGTTTGGCATCCAGAATGTTTTCGCTGTCATGCTTGTAATCAACCAATATATG-ACTAT 1199 * *** * ** ***** consensus_10798#1 GAGTTCTCCATGTCGGGAAACCATCCATACCATAAAACATGCTACAAGGAGCGCTTTCAC 943 consensus_10798#2 GAGTTCTCCATGTCGGGAAACCATCCATACCATAAAACATGCTACAAGGAGCGCTTTCAC 82 consensus_10798#0 GAGTTCTCCATGTCGGGAAACCATCCATACCATAAAACATGCTACAAGGAGCGCTTTCAC 1259 ************************************************************ consensus_10798#1 CCAAAATGTGATGTCTGCAAGCAATTTATTCCTACAAATATGAATGGCCTGATTGAATAT 1003 consensus_10798#2 CCAAAATGTGATGTCTGCAAGCAATTTATTCCTACAAATATGAATGGCCTGATTGAATAT 142 consensus_10798#0 CCAAAATGTGATGTCTGCAAGCAATTTATTCCTACAAATATGAATGGCCTGATTGAATAT 1319 ************************************************************ consensus_10798#1 AGAGCACATCCTTTCTGGTTACAAAAATACTGTCCATCACATGAGGTGGACGGTACTCCA 1063 consensus_10798#2 AGAGCACATCCTTTCTGGTTACAAAAATACTGTCCATCACATGAGGTGGACGGTACTCCA 202 consensus_10798#0 AGAGCACATCCTTTCTGGTTACAAAAATACTGTCCATCACATGAGGTGGACGGTACTCCA 1379 ************************************************************ consensus_10798#1 AGATGCTGTAGTTGTGAAAGAATGGAGCCAAGGGAATCAAGATATGTATTGCTGGACGAT 1123 consensus_10798#2 AGATGCTGTAGTTGTGAAAGAATGGAGCCAAGGGAATCAAGATATGTATTGCTGGACGAT 262 consensus_10798#0 AGATGCTGTAGTTGTGAAAGAATGGAGCCAAGGGAATCAAGATATGTATTGCTGGACGAT 1439 ************************************************************ consensus_10798#1 GGTCGCAAACTCTGCCTGGAGTGCCTTGATTCTGCAGTTATGGATACGAGCGAGTGCCAA 1183 consensus_10798#2 GGTCGCAAACTCTGCCTGGAGTGCCTTGATTCTGCAGTTATGGATACGAGCGAGTGCCAA 322 consensus_10798#0 GGTCGCAAACTCTGCCTGGAGTGCCTTGATTCTGCAGTTATGGATACGAGCGAGTGCCAA 1499 ************************************************************ consensus_10798#1 CCTCTTTATCTTGAAATACAGGAATTTTATGAAGGCCTAAATATGAAAGTGGAACAACAA 1243 consensus_10798#2 CCTCTTTATCTTGAAATACAGGAATTTTATGAAGGCCTAAATATGANAGTGGA-CAACAA 381 consensus_10798#0 CCTCTTTATCTTGAAATACAGGAATTTTATGAAGGCCTAAATATGAAAGTGGAACAACAA 1559 ********************************************** ****** ****** consensus_10798#1 GTTCCCTTGCTTCTTGTAGAAAGACAGGCTTTAAATGAAGCCATGGAAGGAGAGAAGACT 1303 consensus_10798#2 GTTCCCTTGCTTCTTGTAGAAAGACAGGCTTTAAATGAAGCCCTGGAAGGAGAGAAGACT 441 consensus_10798#0 GTTCCCTTGCTTCTTGTAGAAAGACAGGCTTTAAATGAAGCCATGGAAGGAGAGAAGACT 1619 ****************************************** ***************** consensus_10798#1 GGTCACCACCATCTTCCAGAAACAAGATGTTTATGCTTATCAGAAGAGCAAACTGTCAGC 1363 consensus_10798#2 GGTCA------------------------------------------------------- 446 consensus_10798#0 GGTCACCACCATCTTCCAGAAACAAGAGGTTTATGCTTATCAGAAGAGCAAACTGTCAGC 1679 ***** consensus_10798#1 ACGATATTGAGGAGACCAAGAATGGCTGGAAATAAAGTTATGGAAATGATAACGGAGCCA 1423 consensus_10798#2 ------------------------------------------------------------ consensus_10798#0 ACGATATTGAGGAGACCAAGAATGGCTGGAAATAAAGTTATGGAAATGATAACGGAGCCA 1739 consensus_10798#1 TATAGGTTGACTCGTCGATGTGAAGTGACTGCAATTCTCATTCTTTATGGTCTCCCAAGA 1483 consensus_10798#2 ------------------------------------------------------------ consensus_10798#0 TATAGGTTGACTCGTCGATGTGAAGTGACTGCAATTCTCATTCTTTATGGTCTCCCAAGA 1799 consensus_10798#1 TTGTTGACAGGTTCAATTTTAGCTCATGAGATGATGCATGCGTGGTTGCGACTTAAAGGA 1543 consensus_10798#2 ------------------------------------------------------------ consensus_10798#0 TTGTTGACAGGTTCAATTTTAGCTCATGAGATGATGCATGCGTGGTTGCGACTTAAAGGA 1859 consensus_10798#1 TATCGCACACTTAGTCCAGACGTAGAAGAGGGCATATGCCAAGTTCTTGCTCACATGTGG 1603 consensus_10798#2 ------------------------------------------------------------ consensus_10798#0 TATCGCACACTTAGTCCAGACGTAGAAGAGGGCATATGCCAAGTTCTTGCTCACATGTGG 1919 consensus_10798#1 ATTGAGTCAGAGATCATTGCAGGATCAGGCAGTAATGGTGCTTCAACGTCTTCATCCTCA 1663 consensus_10798#2 ------------------------------------------------------------ consensus_10798#0 ATTGAGTCAGAGATCATTGCAGGATCAGGCAGTAATGGTGCTTCAACGTCTTCATCCTCA 1979 consensus_10798#1 TCAGCATCCACATCATCGAAAAAGGGGGGAAGATCTCAGTTTGAGCGAAAGCTTGGTGAT 1723 consensus_10798#2 ------------------------------------------------------------ consensus_10798#0 TCAGCATCCACATCATCGAAAAAGGGGGGAAGATCTCAGTTTGAGCGAAAGCTTGGTGAT 2039 consensus_10798#1 TTTTTCAAGCACCAAATTGAGTCAGATACCTCAATGGCCTATGGCGATGGTTTTAGAGCT 1783 consensus_10798#2 ------------------------------------------------------------ consensus_10798#0 TTTTTCAAGCACCAAATTGAGTCAGATACCTCAATGGCCTATGGCGATGGTTTTAGAGCT 2099 consensus_10798#1 GGCAACCGAGCTGTTCTTCAGTATGGTCTAAAGCGCACCCTTGAGCATATCCGGTTAACA 1843 consensus_10798#2 ------------------------------------------------------------ consensus_10798#0 GGCAACCGAGCTGTTCTTCAGTATGGTCTAAAGCGCACCCTTGAGCATATCCGGTTAACA 2159 consensus_10798#1 GGGACTTTCCCATTTTGAAATTTCATAGATTCGTCTTTTGATGGAAGTTATACACGATCG 1903 consensus_10798#2 ------------------------------------------------------------ consensus_10798#0 GGGACTTTCCCATTTTGAAATTTCATAGATTCGTCTTTTGATGGAAGTTATACACGATCG 2219 consensus_10798#1 ATTTGTCATTAAGCGTCCATTTACAGGAAAAGAAAGCAATTTTGAGATGTGCAATTGTAC 1963 consensus_10798#2 ------------------------------------------------------------ consensus_10798#0 ATTTGTCATTAAGCGTCCATTTACAGGAAAAGAAAGCAATTTTGAGATGTGCAATTGTAC 2279 consensus_10798#1 AAACAATCTTTTCAGTTACTTTTGGAAGGGCTAACTGACGACATTGATTAAATTGTGATA 2023 consensus_10798#2 ------------------------------------------------------------ consensus_10798#0 AAACAATCTTTTCAGTTACTTTTGGAAGGGCTAACTGACGACATTGATTAAATTGTGATA 2339 consensus_10798#1 TGGTTAGCCCAACCAATCACACATGTATGGCATTCAGAAATTCTAATGGAAACAGCGGTA 2083 consensus_10798#2 ------------------------------------------------------------ consensus_10798#0 TGGTTAGCCCAACCAATCACACATGTATGGCATTCAGAAATTCTAATGGAAACAGCGGTA 2399 consensus_10798#1 T---------------------------- 2084 consensus_10798#2 ----------------------------- consensus_10798#0 TTTTTTATGTGAAAAAAAAAAAAAAAATT 2428 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||