These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10818#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1069 fasta sequence [AACTACCACAGCTTGTGAACTATCAAGAGTGAGTAGTAGAGTTTGCAGTGACAACGAGATGAGGAGATCAATCCTCTCACTGTGCTTCCATTTGGCGCTTGTCATTGCATTGGCAGCAAATGTTCCTGACATTGCCAATGGACGCGTGATTGAAGCTAAATCTGATCCAAAGCCAGCAGATCCCAAGCCTAAACCTGACCCAACACCAAAACCACAACCAGAGACAAAGCCCAGTCCACAGCCTAACCCTCAACCTAACCCACAGCCAGATCCAAAACCATCACCGCAGCCTGATCCAAAACCTACACCACAGCCTGAACCAAAACAAGATCCTCAACCAAACCCACAGCCGGATCCAAAACAATCGCCGCAGCCTGACCCAAAACCTACACCACAGCCTAACCCAAAACAAGATCCTCAACCGAACCCACAACCTGACCCAAAACCAACGCTGCAACCTAACCCAAAACAAGATCCTCAGCCGAACCCACAGCCTAACCCGAAACCAACGCCACAGCTTGACCCGAAACAAGATCCTCAACCGAACCCACAACCTAGCCCCAAAGCTGACCCAAAACCAAATCCAAAGCCTAAGCCACAACCGGAGCCGAGCCCAAATCCTAAGCCGGAGCCAAAACCTGAACCCAAACCTGAGCCGAGTCCTAACCCCAAGCCAAATCCTAATCCCAAGCCGGAGCCACAGCCTGATCCTAAGCCAGAACCCAAGCCTCAGCCAGAGCCGTCTCAACCAAAGCTGCCACCACTTTCACCAGCAATAGCTATAATTGTGCCCGGGAACTGAGTAGACTTGGTTGTTTGCTACGTATGATCCCGCATACTTTTGGTATGTACTATTGCTCTAGTGACTATTTGTGTGTTTTTCGTGTGTTGTTCACTAGTGTGTCCATGTGGCTATCTATGTGTTTTCTTAATGCCGTTGCATATGAGCAGGCGTGCTTCTTATAATAAAGCATACATACATACATACATACATACATACATACATATATATATACACGTGTGTTATGTATGTGCGTACATACCATCAATAAAAAGAGCATGTATCCCT] [+] EMBL AK105945 [AACTACCACAGCTTGTGAACTATCAAGAGTGAGTAGTAGAGTTTGCAGTGACAACGAGATGAGGAGATCAATCCTCTCACTGTGCTTCCATTTGGCGCTTGTCATTGCATTGGCAGCAAATGTTCCTGACATTGCCAATGGACGCGTGATTGAAGCTAAATCTGATCCAAAGCCAGCAGATCCCAAGCCTAAACCTGACCCAACACCAAAACCACAACCAGAGACAAAGCCCAGTCCACAGCCTAACCCTCAACCTAACCCACAGCCAGATCCAAAACCATCACCGCAGCCTGATCCAAAACCTACACCACAGCCTGAACCAAAACAAGATCCTCAACCAAACCCACAGCCGGATCCAAAACAATCGCCGCAGCCTGACCCAAAACCTACACCACAGCCTAACCCAAAACAAGATCCTCAACCGAACCCACAACCTGACCCAAAACCAACGCTGCAACCTAACCCAAAACAAGATCCTCAGCCGAACCCACAGCCTAACCCGAAACCAACGCCACAGCTTGACCCGAAACAAGATCCTCAACCGAACCCACAACCTAGCCCCAAAGCTGACCCAAAACCAAATCCAAAGCCTAAGCCACAACCGGAGCCGAGCCCAAATCCTAAGCCGGAGCCAAAACCTGAACCCAAACCTGAGCCGAGTCCTAACCCCAAGCCAAATCCTAATCCCAAGCCGGAGCCACAGCCTGATCCTAAGCCAGAACCCAAGCCTCAGCCAGAGCCGTCTCAACCAAAGCTGCCACCACTTTCACCAGCAATAGCTATAATTGTGCCCGGGAACTGAGTAGACTTGGTTGTTTGCTACGTATGATCCCGCATACTTTTGGTATGTACTATTGCTCTAGTGACTATTTGTGTGTTTTTCGTGTGTTGTTCACTAGTGTGTCCATGTGGCTATCTATGTGTTTTCTTAATGCCGTTGCATATGAGCAGGCGTGCTTCTTATAATAAAGCATACATACATACATACATACATACATACATACATATATATATACACGTGTGTTATGTATGTGCGTACATACCATCAATAAAAAGAGCATGTATCCCT] consensusID : consensus_10818#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1057 fasta sequence [AGCTACCACAGCTTGTGTACTGTCAAGAGTGAGTAGTAGAGTTTGTAGTGACAACGAGATGAGATCAATCCTCTCACTGTGCTTCCATTTGGCGCTTGCCATTGCATTGGCGGCAAATGTTCCTGATCACATTGCCAATGGACGCGTGATTGAAGCTAAATCTGATCCAAAGCCAGCAGATCCCAATCCTAAACCTGACCCAACACCAAAACCACAACCAGAGACAAAGCCCAGTCCACAGCCTAACCCTCAACCTAACCCACAGCCAGATCCAAAACCATCACCGCAGCCTGACCCAAAACCTACACCACAGCCTGAACCAAAACAAGATCCTAAACCAAACCCACAACCGGATCCAAAACCATCTCCGCAGCCTGACCCGAAACCTACACCACAGCCTGACCCAAAACAAGATCCTCAACCGAACCCACAACCTGACCCAAAACCAACGCCGCAACCTAACCCAAAACAAGATCCTCAGCCGAACCCACAGCCTGACCCAAAACCAACGCCACAGCCTGACCCGAAACAAGATCCTCAACCGAACCCGCAACCTAGCCCCAAAGCTGACCCAAAACCAAATCCAAAGCCTAAGCCACAACCGGAGCCGAGCCCAAATCCTAAGCCGGAGCCAAAGCCTGAACCCAAACCTGAGCCAAGTCCTAACCCCAAGCCAAATCCTAATCCTAAGCCGGAGCCACAGCCTGATCCTAAGCCAGAACCCAAGCCTCAGCCAGAGCCATCTCTGCCAAAGCCACCACCTCTTTCACCAGCAATAGCTATAATTGTGCCCGGGAACTGAGTAGACTTTTTGCTACGTATGATTCCGCATAGTTTTGGTATGTACTATTGCTCTAGTGACTATCTATGTGTTTGTCGTGTGTTGTTCACTGGTGTATGTGTCCATGTGGCTATCTATGTGTTTTCTTAATGCTGTTGCATCTGAGCAGGCGTGCTTCTTATAATAAAGCATATATATGCACGTGTGTTATGTATGTGCGTACATATATACCATGAATAAAAAGAG-CATGTATCCCTGTGTGTCACTAAAAAAAAA] [+] EMBL AK105956 [AGCTACCACAGCTTGTGTACTGTCAAGAGTGAGTAGTAGAGTTTGTAGTGACAACGAGATGAGATCAATCCTCTCACTGTGCTTCCATTTGGCGCTTGCCATTGCATTGGCGGCAAATGTTCCTGATCACATTGCCAATGGACGCGTGATTGAAGCTAAATCTGATCCAAAGCCAGCAGATCCCAATCCTAAACCTGACCCAACACCAAAACCACAACCAGAGACAAAGCCCAGTCCACAGCCTAACCCTCAACCTAACCCACAGCCAGATCCAAAACCATCACCGCAGCCTGACCCAAAACCTACACCACAGCCTGAACCAAAACAAGATCCTAAACCAAACCCACAACCGGATCCAAAACCATCTCCGCAGCCTGACCCGAAACCTACACCACAGCCTGACCCAAAACAAGATCCTCAACCGAACCCACAACCTGACCCAAAACCAACGCCGCAACCTAACCCAAAACAAGATCCTCAGCCGAACCCACAGCCTGACCCAAAACCAACGCCACAGCCTGACCCGAAACAAGATCCTCAACCGAACCCGCAACCTAGCCCCAAAGCTGACCCAAAACCAAATCCAAAGCCTAAGCCACAACCGGAGCCGAGCCCAAATCCTAAGCCGGAGCCAAAGCCTGAACCCAAACCTGAGCCAAGTCCTAACCCCAAGCCAAATCCTAATCCTAAGCCGGAGCCACAGCCTGATCCTAAGCCAGAACCCAAGCCTCAGCCAGAGCCATCTCTGCCAAAGCCACCACCTCTTTCACCAGCAATAGCTATAATTGTGCCCGGGAACTGAGTAGACTTTTTGCTACGTATGATTCCGCATAGTTTTGGTATGTACTATTGCTCTAGTGACTATCTATGTGTTTGTCGTGTGTTGTTCACTGGTGTATGTGTCCATGTGGCTATCTATGTGTTTTCTTAATGCTGTTGCATCTGAGCAGGCGTGCTTCTTATAATAAAGCATATATATGCACGTGTGTTATGTATGTGCGTACATATATACCATGAATAAAAAGAG CATGTATCCCT ] [+] EMBL CF308471 [ CTACCACAGCTTGTGTACTGTCAAGAGTGAGTAGTAGAGTTTGTAGTGACAACGAGATGAGATCAATCCTCTCACTGTGCTTCCATTTGGCGCTTGCCATTGCATTGGCGGCAAATGTTCCTGATCACATTGCCAATGGACGCGTGATTGAAGCTAAATCTGATCCAAAGCCAGCAGATCCCAATCCTAAACCTGACCCAACACCAAAACCACAACCAGAGACAAAGCCCAGTCCACAGCCTAACCCTCAACCTAACCCACAGCCAGATCCAAAACCATCACCGCAGCCTGACCCAAAACCTACACCACAGCCTGAACCAAAACAAGATCCTAAACCAAACCCACAACCGGATCCAAAACCATCTCCGCAGCCTGACCCGAAACCTACACCACAGCCTGACCCAAAACAAGATCCTCAGCCGAACCCACAACCTGACCCAAAACCAACGCCGCAACCTAACCCAAAACAAGATCCTCAGCCGAACCCACAGCCTGACCCAAAACCAACGCCACAGCCTGACCCGAAACAAGATCCTCAACCGAACCCGCAACCTAGCCCCAAAGCTGACCCAAAACCAAATCCAAAGCCTAAGCCACAACCGGAGCCGAGC ] [+] EMBL CF281451 [ CACAGCTTGTGTACTGTCAAGAGTGAGTAGTAGAGTTTGTAGTGACAACGAGATGAGATCAATCCTCTCACTGTGCTTCCATTTGGCGCTTGCCATTGCATTGGCGGCAAATGTTCCTGATCACATTGCCAATGGACTCTTGTTTTAAGCTAAATCTGATCCAAAGCCAGCAGATCCCAATCCTAAACCTGACCCAACACCAAAACCACAACCAGAGACAAAGCCCAGTCCACAGCCTAACCCTCAACCTAACCCACAGCCAGATCCAAAACCATCACCGCAGCCTGACCCAAAACCTACACCACAGCCTGAACCAAAACAAGATCCTAAACCAAACCCACAACCGGATCCAAAACCATCTCCGCAGCCTGACCCGAAACCTACACCACAGCCTGACCCAAAACAAGATCCTCAACCGAACCCACAACCTGACCCAAAACCAACGCCGCAACCTAACCCAAAACAAGATCCTCAGCCGAACCCACAGCCTGACCCAAAACCAACGCCACAGCCTGACCCGAAACAAGATCCTCAACCGAACCCGCAACCTAGCCCCAAAGCTGACCCAAAACCAAATCCAAAGCCTAAGCCACAACCGGAGCCGAGCCCAAATCCTAAGCCGGAGCCAAAGCCTGAACCCAAACCTGAGCCAAGTCCTAACCCCAA ] [+] EMBL AU077703 [ GACAACGAGATGAGATCAATCCTCTCACTGTGCTTCCATTTGGCGCTTGCCATTGCATTGGCGGCAAATGTTCCTGATCACATTGCCAATGGACGCGTGATTGAAGCTAAATCTGATCCAAAGCCAGCAGATCCCAATCCTAAACCTGACCCAACACCAAAACCACAACCAGAGACAAAGCCCAGTCCACAGCCTAACCCTCAACCTAACCCACAGCCAGATCCAAAACCATCACCGCAGCCTGACCCAAAACCTACACCACAGCCTGAACCANAACAAGATCCTAAACCAAACCCACAACCGGATCCAAAACCATCTCCGCAGCCTGA NCGGAACCTACACCACA ] [+] EMBL AU077704 [ CCGAAACCT CACCACAGCCTGACCCAANACAAGATCCTCAACCGAACCCACAACCTGACCCAAAACCAACGCCGCAACCTAACCCAAAACAAGATCCTCAGCCGAACCCACAGCCTGACCCAAAACCAACGCCACAGCCTGACCCGAAACAAGATCCTCAACCGAACCCGCAACCTAGCCCCAAAGCTGACCCAAAACCAAATCCAAAGCCTAAGCCACAACCGGAGCCGAGCCCAAATCCTAAGCCGGAGCCAAAGCCTGAACCCAAACCTGAGCCAAGTCCTAACCCCAAGCCAAATCCTAATCCTAAGCCGGAGCCACAGCCTGATCCTAAGCCAGAACCCAAGCCTCAGCCAGAGCCATCTCTGCCAAAGCCACCACCTCTTTCACCAGCAATAGCTATAATTGTGCCCGGGAACTGAGTAGACTTTTTGCTACGTATGATTCCGCATAGTTTTGGTATGTACTATTGCTCTAGTGACTATCTATGTGTTTGTCGTGTGTTGTTCACTGGTGTATGTGTCCATGTGGCTATCTATGTGTTTTCTTAATGCTGTTGCATCTGAGCAGGCGTGCTTCTTATAATAAAGCATATATATGCACGTGTGTTATGTATGTGCGTACATATATACCATGAATAAAAAGAG CATGTATCCCTGTGTGTCACTAAAAAAAAA] [-] EMBL CF308472 [ GATCCTCAACCGAACCCGCAACCTAGCCCCAAAGCTGACCCAAAACCAAATCCAAAGCCTAAGCCACAACCGGAGCCGAGCCCAAATCCTAAGCCGGAGCCAAAGCCTGAACCCAAACCTGAGCCAAGTCCTAACCCCAAGCCAAATCCTAATCCTAAGCCGGAGCCACAGCCTGATCTTAAGCCAGAACCCAAGCCTCAGCCAGAGCCATCTCTGCCAAAGCCACCACCTCTTTCACCAGCAATAGCTATAATTGTGCCCGGGAACTGAGTAGACTTTTTGCTACGTATGATTCCGCATAGTTTTGGTATGTACTATTGCTCTAGTGACTATCTATGTGTTTGTCGTGTGTTGTTCACTGGTGAAAGAGTCCATGTGGCTATCTATGTGTTTTCTTAATGCTGTTGCATCTGAGCAGGCGTGCTTCTTATAATAAAGCATATATATGCACGTGTGTTATGTATGTGCGTACATATATACCATGAATAAAAAGAGCCATGTATCCCTGTGTGTCACTAAAAAAAA ] [-] EMBL CF281450 [ GCCTAAGCCACAACCGGAGCCGAGCCCAAATCCTAAGCCGGAGCCAAAGCCTGAACCCAAACCTGAGCCAAGTCCTAACCCCAAGCCAAATCCTAATCCTAAGCCGGAGCCACAGCCTGATCCTAAGCCAGAACCCAAGCCTCAGCCAGAGCCATCTCTGCCAAAGCCACCACCTCTTTCACCAGCAATAGCTATAATTGTGCCCGGGAACTGAGTAGACTTTTTGCTACGTATGATTCCGCATAGTTTTGGTATGTACTATTGCTCTAGTGACTATCTATGTGTTTGTCGTGTGTTGTTCACTGGTGTATGTGTCCATGTGGCTATCTATGTGTTTTCTTAATGCTGTTGCATCTGAGCAGGCGTGCTTCTTATAATAAAGCATATATATGCACGTGTGTTATGTATGTGCGTACATATATACCATGAATAAAAAGAG CATGTAaaa ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10818#0 AACTACCACAGCTTGTGAACTATCAAGAGTGAGTAGTAGAGTTTGCAGTGACAACGAGAT 60 consensus_10818#1 AGCTACCACAGCTTGTGTACTGTCAAGAGTGAGTAGTAGAGTTTGTAGTGACAACGAGAT 60 * *************** *** *********************** ************** consensus_10818#0 GAGGAGATCAATCCTCTCACTGTGCTTCCATTTGGCGCTTGTCATTGCATTGGCAGCAAA 120 consensus_10818#1 GAG---ATCAATCCTCTCACTGTGCTTCCATTTGGCGCTTGCCATTGCATTGGCGGCAAA 117 *** *********************************** ************ ***** consensus_10818#0 TGTTCCTGA---CATTGCCAATGGACGCGTGATTGAAGCTAAATCTGATCCAAAGCCAGC 177 consensus_10818#1 TGTTCCTGATCACATTGCCAATGGACGCGTGATTGAAGCTAAATCTGATCCAAAGCCAGC 177 ********* ************************************************ consensus_10818#0 AGATCCCAAGCCTAAACCTGACCCAACACCAAAACCACAACCAGAGACAAAGCCCAGTCC 237 consensus_10818#1 AGATCCCAATCCTAAACCTGACCCAACACCAAAACCACAACCAGAGACAAAGCCCAGTCC 237 ********* ************************************************** consensus_10818#0 ACAGCCTAACCCTCAACCTAACCCACAGCCAGATCCAAAACCATCACCGCAGCCTGATCC 297 consensus_10818#1 ACAGCCTAACCCTCAACCTAACCCACAGCCAGATCCAAAACCATCACCGCAGCCTGACCC 297 ********************************************************* ** consensus_10818#0 AAAACCTACACCACAGCCTGAACCAAAACAAGATCCTCAACCAAACCCACAGCCGGATCC 357 consensus_10818#1 AAAACCTACACCACAGCCTGAACCAAAACAAGATCCTAAACCAAACCCACAACCGGATCC 357 ************************************* ************* ******** consensus_10818#0 AAAACAATCGCCGCAGCCTGACCCAAAACCTACACCACAGCCTAACCCAAAACAAGATCC 417 consensus_10818#1 AAAACCATCTCCGCAGCCTGACCCGAAACCTACACCACAGCCTGACCCAAAACAAGATCC 417 ***** *** ************** ****************** **************** consensus_10818#0 TCAACCGAACCCACAACCTGACCCAAAACCAACGCTGCAACCTAACCCAAAACAAGATCC 477 consensus_10818#1 TCAACCGAACCCACAACCTGACCCAAAACCAACGCCGCAACCTAACCCAAAACAAGATCC 477 *********************************** ************************ consensus_10818#0 TCAGCCGAACCCACAGCCTAACCCGAAACCAACGCCACAGCTTGACCCGAAACAAGATCC 537 consensus_10818#1 TCAGCCGAACCCACAGCCTGACCCAAAACCAACGCCACAGCCTGACCCGAAACAAGATCC 537 ******************* **** **************** ****************** consensus_10818#0 TCAACCGAACCCACAACCTAGCCCCAAAGCTGACCCAAAACCAAATCCAAAGCCTAAGCC 597 consensus_10818#1 TCAACCGAACCCGCAACCTAGCCCCAAAGCTGACCCAAAACCAAATCCAAAGCCTAAGCC 597 ************ *********************************************** consensus_10818#0 ACAACCGGAGCCGAGCCCAAATCCTAAGCCGGAGCCAAAACCTGAACCCAAACCTGAGCC 657 consensus_10818#1 ACAACCGGAGCCGAGCCCAAATCCTAAGCCGGAGCCAAAGCCTGAACCCAAACCTGAGCC 657 *************************************** ******************** consensus_10818#0 GAGTCCTAACCCCAAGCCAAATCCTAATCCCAAGCCGGAGCCACAGCCTGATCCTAAGCC 717 consensus_10818#1 AAGTCCTAACCCCAAGCCAAATCCTAATCCTAAGCCGGAGCCACAGCCTGATCCTAAGCC 717 ***************************** ***************************** consensus_10818#0 AGAACCCAAGCCTCAGCCAGAGCCGTCTCAACCAAAGCTGCCACCACTTTCACCAGCAAT 777 consensus_10818#1 AGAACCCAAGCCTCAGCCAGAGCCATCTCTGCCAAAGCCACCACCTCTTTCACCAGCAAT 777 ************************ **** ******* ***** ************** consensus_10818#0 AGCTATAATTGTGCCCGGGAACTGAGTAGACTTGGTTGTTTGCTACGTATGATCCCGCAT 837 consensus_10818#1 AGCTATAATTGTGCCCGGGAACTGAGTAGACTT-----TTTGCTACGTATGATTCCGCAT 832 ********************************* *************** ****** consensus_10818#0 ACTTTTGGTATGTACTATTGCTCTAGTGACTATTTGTGTGTTTTTCGTGTGTTGTTCACT 897 consensus_10818#1 AGTTTTGGTATGTACTATTGCTCTAGTGACTATCTATGTGTTTGTCGTGTGTTGTTCACT 892 * ******************************* * ******* **************** consensus_10818#0 AGTGT----GTCCATGTGGCTATCTATGTGTTTTCTTAATGCCGTTGCATATGAGCAGGC 953 consensus_10818#1 GGTGTATGTGTCCATGTGGCTATCTATGTGTTTTCTTAATGCTGTTGCATCTGAGCAGGC 952 **** ********************************* ******* ********* consensus_10818#0 GTGCTTCTTATAATAAAGCATACATACATACATACAT-ACATACATACATACATATATAT 1012 consensus_10818#1 GTGCTTCTTATAATAAAGCATATATATGCACGTGTGTTATGTATGTGCGTACATATATAC 1012 ********************** *** ** * * * ** * * ********** consensus_10818#0 -ATACACGTGTGTTATGTATGTGCGTACATACCATCAATAAAAAGAGCATGTATCCCT 1069 consensus_10818#1 CATGAATAAAAAGAGCATGTATCCCTGTGTGTCACTAAAAAAAAA------------- 1057 ** * * * * * * * ** ** ***** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||