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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10832#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1924 fasta sequence
[GCCGCGCCGCGCCGCGTGCGAATCTCCGGCGAGGATCGAGGGCGCCTCTGGTCCCGTCTGGTGGTCGGTCAGCCATGTCGCTCCGCGTGCTGAACCCGAACGCGGAGGTGCTCAACAAGTCGGCGGCGCTGCACATGAACATCAACGCCGCCAAGGGCCTCCAGGACGTGCTCAAGACCAACCTTGGCCCCAAGGGCACCATCAAGATGCTTGTGGGTGGAGCTGGCGACATCAAGCTGACCAAGGATGGGAACACTCTCTTGAAGGAAATGCAAATCCAGAACCCAACAGCTATCATGATCGCAAGGACCGCGGTTGCACAGGACGATACCAGCGGTGATGGCACAACCTCCACTGTGCTTTTTATTGGGGAGCTTATGAAGCAATCTGAGCGGTGCATTGATGAAGGCACTCATCCACGTTTTTTGGTTGATGGTTTTGATGTTGCCAAGAGAGCAACTCTTGAATTTCTCGAGAAGTTCAAGACATCAGTTGTCATGGGCGATGAACCTGACAGAGAGATCTTGAAAATGATAGCAAGAACTACTCTAAGGACAAAGCTGTACGAAGGATTGGCTGATCAGTTGACTGATATTGTTGTGAATGCGGTTCTATGCATCCGCAAACCTGATGAACCAATCGATCTTTTTAT-GGTTGAGATAATGCACATGCGCC-ACAAATTTGATGTTGACACACGTCT-GGTTGAGGGTCTGGTCTTGGACCATGGTTCTCGGCACCCTGATATGAAACGCAGGGCAGAGAACTGTTATATCTTGACCTGCAATGTCTCACTGGAATATGAGAAAAGTGAAATAAATGCAGGATTTTTCTACTCGAATGCAGAACAAAGAGAAAAGATGGTTGCTGCAGAAAGGCGCCAAGTTGATGAGCGTGTGAAGAGGATTATTGAATTGAAAAATAAGGTTTGTGCTGGAAATGATAAAAATTTTGTGGTGATCAATCAGAAGGGTATTGACCCTCCATCCCTCGATCTCCTAGCTAGAGCAGGGATTATTGGTCTCCGAAGAGCAAAGAGGAGAAACATGGAGAGGCTTGTGTTAGCATGTGGGGGTGAAGCTGTTGATTCAGTTGATGATTTGACTGAAGATTGTCTTGGCTGGGCTGGGCTTGTCTATGAGCATACTCTTGGTGAAGAAAAGTACACCTTTATTGAGAATGTGAAAAATCCTCGCTCTTGCACTATACTGATTAAAGGGCCTAATGATCACACCATTGCGCAAATTAAGGATGCTGTTCGCGATGGTCTAAGATCTGTTAAGAATACGGTTGAGGATGAAGTAGTTGTGCTGGGAGCAGGAGCATTTGAGGTTGCTGCGAAGAAGCATCTTATTGACAACGTGAAGAAAACTGTCAAAGGACGAGCACAACTTGGGGTGGAGGCATTTGCTGATGCTCTTCTTGTCATACCCAAAACACTAGCAGAAAATTCAGGTCTAGATACCCAAGATGTTATTGTCTCTCTCCAGAATGAACATGATCGTGGATTGGTGGTGGGATTGAA-CCATCACTCTGGCGAACCAATTGATCCCCAAATGGAGGGCATCTTCGACAATTACTCCGTGAAACG-CCAGATCATCAATTCCGGA-CCCATCATCGCGTCACAGTTATTGCTTGTGGATGAAGTGATCAGGGCTGGCCGCAACATGAGGAAACCAACCTAATACTTTCCCTACCTGCCGCTGAGTCCTCTGTTTTGTGGGAGATATTACGCATTTTGTTTGGTTATTTTGCCTTTCTATCTTTAGTTTGTGCGTAGTAGTGAGGTGGGTGAAATGTCCGGAGGTTCTGCTAGTTTGTTCCTCTTTGACTGTAACAGATTTCACTTGTAATCTTTGTCACACTGTCATTTATGCCGTCCTGATGATTTGGGAATCAGTATGTGCTTATGCTTTCATGTCAAAAA]
[+] EMBL CA753486 [GCCGCGCCGCGCCGCGTGCGAATCTCCGGCGAGGATCGAGGGCGCCTCTGGTCCCGTCTGGTGGTCGGTCAGCCATGTCGCTCCGCGTGCTGAACCCGAACGCGGAGGTGCTCAACAAGTCGGCGGCGCTGCACATGAACATCAACGCCGCCAAGGGCCTCCAGGACGTGCTCAAGACCAACCTTGGCCCCAAGGGCACCATCAAGATGCTTGTGGGTGGAGCTGGCGACATCAAGCTGACCAAGGATGGGAACACTCTCTTGAAGGAAATGCAAATCCAGAACCCAACAGCTATCATGATCGCAAGGACCGCGGTTGCACAGGACGATACCAGCGGTGATGGCACAACCTCCACTGTGCTTTTTATTGGGGAGCTTATGAAGCAATCTGAGCGGTGCATTGATGAAGGCACTCATCCACGTTTTTTGGTTGATGGTTTTGATGTTGCCAAGAGAGCAACTCTTGAATTTCTCGAGAAGTTCAAGACATCAGTTGTCATGGGCGATGAACCTGACAGAGAGA ]
[+] EMBL AK065883 [ CGCGCCGCGCCGCGTGCGAATCTCCGGCGAGGATCGAGGGCGCCTCTGGTCCCGTCTGGTGTTTGGTCAGCCATGTCGCTCCGCGTGCTGAACCCGAACGCGGAGGTGCTCAACAAGTCGGCGGCGCTGCACATGAACATCAACGCCGCCAAGGGCCTCCAGGACGTGCTCAAGACCAACCTTGGCCCCAAGGGCACCATCAAGATGCTTGTGGGTGGAGCTGGCGACATCAAGCTGACCAAGGATGGGAACACTCTCTTGAAGGAAATGCAAATCCAGAACCCAACAGCTATCATGATCGCAAGGACCGCGGTTGCACAGGACGATACCAGCGGTGATGGCACAACCTCCACTGTGCTTTTTATTGGGGAGCTTATGAAGCAATCTGAGCGGTGCATTGATGAAGGCACTCATCCACGTTTTTTGGTTGATGGTTTTGATGTTGCCAAGAGAGCAACTCTTGAATTTCTCGAGAAGTTCAAGACATCAGTTGTCATGGGCGATGAACCTGACAGAGAGATCTTGAAAATGATAGCAAGAACTACTCTAAGGACAAAGCTGTACGAAGGATTGGCTGATCAGTTGACTGATATTGTTGTGAATGCGGTTCTATGCATCCGCAAACCTGATGAACCAATCGATCTTTTTAT GGTTGAGATAATGCACATGCGCC ACAAATTTGATGTTGACACACGTCT GGTTGAGGGTCTGGTCTTGGACCATGGTTCTCGGCACCCTGATATGAAACGCAGGGCAGAGAACTGTTATATCTTGACCTGCAATGTCTCACTGGAATATGAGAAAAGTGAAATAAATGCAGGATTTTTCTACTCGAATGCAGAACAAAGAGAAAAGATGGTTGCTGCAGAAAGGCGCCAAGTTGATGAGCGTGTGAAGAGGATTATTGAATTGAAAAATAAGGTTTGTGCTGGAAATGATAAAAATTTTGTGGTGATCAATCAGAAGGGTATTGACCCTCCATCCCTCGATCTCCTAGCTAGAGCAGGGATTATTGGTCTCCGAAGAGCAAAGAGGAGAAACATGGAGAGGCTTGTGTTAGCATGTGGGGGTGAAGCTGTTGATTCAGTTGATGATTTGACTGAAGATTGTCTTGGCTGGGCTGGGCTTGTCTATGAGCATACTCTTGGTGAAGAAAAGTACACCTTTATTGAGAATGTGAAAAATCCTCGCTCTTGCACTATACTGATTAAAGGGCCTAATGATCACACCATTGCGCAAATTAAGGATGCTGTTCGCGATGGTCTAAGATCTGTTAAGAATACGGTTGAGGATGAAGTAGTTGTGCTGGGAGCAGGAGCATTTGAGGTTGCTGCGAAGAAGCATCTTATTGACAACGTGAAGAAAACTGTCAAAGGACGAGCACAACTTGGGGTGGAGGCATTTGCTGATGCTCTTCTTGTCATACCCAAAACACTAGCAGAAAATTCAGGTCTAGATACCCAAGATGTTATTGTCTCTCTCCAGAATGAACATGATCGTGGATTGGTGGTGGGATTGAA CCATCACTCTGGCGAACCAATTGATCCCCAAATGGAGGGCATCTTCGACAATTACTCCGTGAAACG CCAGATCATCAATTCCGGA CCCATCATCGCGTCACAGTTATTGCTTGTGGATGAAGTGATCAGGGCTGGCCGCAACATGAGGAAACCAACCTAATACTTTCCCTACCTGCCGCTGAGTCCTCTGTTTTGTGGGAGATATTACGCATTTTGTTTGGTTATTTTGCCTTTCTATCTTTAGTTTGTGCGTAGTAGTGAGGTGGGTGAAATGTCCGGAGGTTCTGCTAGTTTGTTCCTCTTTGACTGTAACAGATTTCACTTGTAATCTTTGTCACACTGTCATTTATGCCGTCCTG ]
[+] EMBL C91770 [ AAGGACCGCGGTTGCACAGGACGATACCAGCGGTGATGGCACAACCTCCACTGTGCTTGTTATTGGGGAGCTTATGAAGCAATCTGAGCGGTGCATTGATGAAGGCACTNATCCACGTTTTTTGGTTGATGGTTTTGATGTNGCCAAGAGAGCAACTCTTGAATTTCTCGAGAAGTTCAAGACATCAGTNGTCATGGGCGATGAACCTGACAGAGAGATCTTGAAAATGATAGCAAGAACTACTCTAAGGACAAAGCTGTNCGAAGGATTGGCTGATCAGTTGACTGAAATTGTTGTGAATGCGGTTCTATGCATCCGCAAACCTGATGAACCAATCGATCTTTTTATGGGTTGAGANAATGCACATGCGCCAAAAAATTTGATGTTGAAACACGTTTGGGTTAAGGGTTTGGNCTTGGACCATGGTTCTCGGCNCC ]
[+] EMBL OSS0981A [ CAATGTCTCACTGGAATATGAGAAAAGTGAAATAAATGCAGGATTTTNCTACTCGAATGCAGAACAAAGAGAAAAGATGGTTGCTGCAGAAAGGCGCCAAGTTGATGAGCGTGTGAAGAGGATTATTGAATTGAAAAATAAGGTTTGTNCTGGAAATGATAAAAATTTTGTGGTGATCAATCAGAAGGGTATTGACCCTCCAT ]
[+] EMBL AK062146 [ AATTTTGTGGTGATCAATCAGAAGGGTATTGACCCTCCATCCCTCGATCTCCTAGCTAGAGCAGGGATTATTGGTCTCCGAAGAGCAAAGAGGAGAAACATGGAGAGGCTTGTGTTAGCATGTGGGGGTGAAGCTGTTGATTCAGTTGATGATTTGACTGAAGATTGTCTTGGCTGGGCTGGGCTTGTCTATGAGCATACTCTTGGTGAAGAAAAGTACACCTTTATTGAGAATGTGAAAAATCCTCGCTCTTGCACTATACTGATTAAAGGGCCTAATGATCACACCATTGCGCAAATTAAGGATGCTGTTCGCGATGGTCTAAGATCTGTTAAGAATACGGTTGAGGATGAAGCAGTTGTGCTGGGAGCAGGAGCATTTGAGGTTGCTGCGAAGAAGCATCTTATTGACAACGTGAAGAAAACTGTCAAAGGACGAGCACAACTTGGGGTGGAGGCATTTGCTGATGCTCTTCTTGTCATACCCAAAACACTAGCAGAAAATTCAGGTCTAGATACCCAAGATGTTATTGTCTCTCTCCAGAATGAACATGATCGTGGATTGGTGGTGGGATTGAA CCATCACTCTGGCGAACCAATTGATCCCCAAATGGAGGGCATCTTCGACAATTACTCCGTGAAACG CCAGATCATCAATTCCGGA CCCATCATCGCGTCACAGTTATTGCTTGTGGATGAAGTGATCAGGGCTGGCCGCAACATGAGGAAACCAACCTAATACTTTCCCTACCTGCCGCTGAGTCCTCTGTTTTGTGGGAGATATTACGCATTTTGTTTGGTTATTTTGCCTTTCTATCTTTAGTTTGTGCGTAGTAGTGAGGTGGGTGAAATGTCCGGAGGTTCTGCTAGTTTGTTCCTCTTTGACTGTAACAGATTTCACTTGTAATCTTTGTCACACTGTCATTTATGCCGTCCTGATGATTTGGGAATCAGTATGTGCTTATG ]
[+] EMBL AU182836 [ ATTGTCTCTCTCCAGAATGAACATGATCGTGGATTGGTGGTGGGATTGAACCCATCACTCTGGCGAACCAATTGATCCCCAAATGGAGGGCATCTTCGACAATTACTCCGTGAAACG CCAGATCATCAATTCCGGA CCCATCATCGCGTCACAGTTATTGCTTGTGGATGAAGTGATCAGGGCTGGCCGCAACATGAGGAAACCAACCTAATACTTTCCCTACCTGCCGCTGAGTCCTCTGTTTTGTGGGAGATATTACGCATTTTGTTTGGTTATTTTGCCNTTCTATCTTTAGTTTGTGCGTAGTAGTGAGGTGGGTGAAATGTCCGGAGGTTCTGCTAGTTTGTTCCTCTTTGACTGTAACAGATTTCACTTGTAATCTTTGTCACACTGTCATTTATGCCGTCCTGATGATTTGGGAATCAaaaaaaaaa ]
[+] EMBL AU174182 [ CAGAATGAACATGATCGTGGATTGGTGGTGGGATTGAACCCATCACTCTGGCGAACCAATTGATCCCCAAATGGAGGGCATCTTCGACAATTACTCCGTGAAACGCCCAGATCATCAATTCCGGACCCCATCATCGCGTCACAGTTATTGCTTGTGGATGAAGTGATCAGGGCTGGCCGCAACATGAGGAAACCAACCTAATACTTTCCCTACCTGCCGCTGAGTCCTCTGTTTTGTGGGAGATATTACGCATTTTGTTTGGGTATTTTGCCTTTCTATCTTTAGTTTGTGCGTAGTAGTGAGGTGGGTGAAATGTCCGGAGGTTCTGCTAGTTTGTTCCTCTTTGACTGTAACAGATTTCACTTGTAATCTTTGTCACACTGTCATTTATGCCGTCCTGATGATTTGGGAATCAGTATGTGCTTATGCTTTCATGTCAAAAA]
consensusID : consensus_10832#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 206 fasta sequence
[CGAGGACGAGACAAGGGGGTAACAGATTTACTTGTAATCTTTGTNCACTGTCATTTATGCCGTCCTGATGATTTGGGAATCAGTATGTGCTTATGCTTTCATGTCATTTGTTCTCACGTTGAACTAAGCGGAATGCACCAAATTTTGTTTGGTGAGTTGTCGATTACCCATTTGCTTTGGCTATATATAGAAAGAGGCTAATGCGT]
[+] EMBL CA765120 [CGAGGACGAGACAAGGGGGTAACAGATTTACTTGTAATCTTTGTNCACTGTCATTTATGCCGTCCTGATGATTTGGGAATCAGTATGTGCTTATGCTTTCATGTCATTTGTTCTCACGTTGAACTAAGCGGAATGCACCAAATTTTGTTTGGTGAGTTGTCGATTACCCATTTGCTTTGGCTATATATAGAAAGAGGCTAATGCGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10832#0 GCCGCGCCGCGCCGCGTGCGAATCTCCGGCGAGGATCGAGGGCGCCTCTGGTCCCGTCTG 60
consensus_10832#1 ------------------------------------------------------------
consensus_10832#0 GTGGTCGGTCAGCCATGTCGCTCCGCGTGCTGAACCCGAACGCGGAGGTGCTCAACAAGT 120
consensus_10832#1 ------------------------------------------------------------
consensus_10832#0 CGGCGGCGCTGCACATGAACATCAACGCCGCCAAGGGCCTCCAGGACGTGCTCAAGACCA 180
consensus_10832#1 ------------------------------------------------------------
consensus_10832#0 ACCTTGGCCCCAAGGGCACCATCAAGATGCTTGTGGGTGGAGCTGGCGACATCAAGCTGA 240
consensus_10832#1 ------------------------------------------------------------
consensus_10832#0 CCAAGGATGGGAACACTCTCTTGAAGGAAATGCAAATCCAGAACCCAACAGCTATCATGA 300
consensus_10832#1 ------------------------------------------------------------
consensus_10832#0 TCGCAAGGACCGCGGTTGCACAGGACGATACCAGCGGTGATGGCACAACCTCCACTGTGC 360
consensus_10832#1 ------------------------------------------------------------
consensus_10832#0 TTTTTATTGGGGAGCTTATGAAGCAATCTGAGCGGTGCATTGATGAAGGCACTCATCCAC 420
consensus_10832#1 ------------------------------------------------------------
consensus_10832#0 GTTTTTTGGTTGATGGTTTTGATGTTGCCAAGAGAGCAACTCTTGAATTTCTCGAGAAGT 480
consensus_10832#1 ------------------------------------------------------------
consensus_10832#0 TCAAGACATCAGTTGTCATGGGCGATGAACCTGACAGAGAGATCTTGAAAATGATAGCAA 540
consensus_10832#1 ------------------------------------------------------------
consensus_10832#0 GAACTACTCTAAGGACAAAGCTGTACGAAGGATTGGCTGATCAGTTGACTGATATTGTTG 600
consensus_10832#1 ------------------------------------------------------------
consensus_10832#0 TGAATGCGGTTCTATGCATCCGCAAACCTGATGAACCAATCGATCTTTTTATGGTTGAGA 660
consensus_10832#1 ------------------------------------------------------------
consensus_10832#0 TAATGCACATGCGCCACAAATTTGATGTTGACACACGTCTGGTTGAGGGTCTGGTCTTGG 720
consensus_10832#1 ------------------------------------------------------------
consensus_10832#0 ACCATGGTTCTCGGCACCCTGATATGAAACGCAGGGCAGAGAACTGTTATATCTTGACCT 780
consensus_10832#1 ------------------------------------------------------------
consensus_10832#0 GCAATGTCTCACTGGAATATGAGAAAAGTGAAATAAATGCAGGATTTTTCTACTCGAATG 840
consensus_10832#1 ------------------------------------------------------------
consensus_10832#0 CAGAACAAAGAGAAAAGATGGTTGCTGCAGAAAGGCGCCAAGTTGATGAGCGTGTGAAGA 900
consensus_10832#1 ------------------------------------------------------------
consensus_10832#0 GGATTATTGAATTGAAAAATAAGGTTTGTGCTGGAAATGATAAAAATTTTGTGGTGATCA 960
consensus_10832#1 ------------------------------------------------------------
consensus_10832#0 ATCAGAAGGGTATTGACCCTCCATCCCTCGATCTCCTAGCTAGAGCAGGGATTATTGGTC 1020
consensus_10832#1 ------------------------------------------------------------
consensus_10832#0 TCCGAAGAGCAAAGAGGAGAAACATGGAGAGGCTTGTGTTAGCATGTGGGGGTGAAGCTG 1080
consensus_10832#1 ------------------------------------------------------------
consensus_10832#0 TTGATTCAGTTGATGATTTGACTGAAGATTGTCTTGGCTGGGCTGGGCTTGTCTATGAGC 1140
consensus_10832#1 ------------------------------------------------------------
consensus_10832#0 ATACTCTTGGTGAAGAAAAGTACACCTTTATTGAGAATGTGAAAAATCCTCGCTCTTGCA 1200
consensus_10832#1 ------------------------------------------------------------
consensus_10832#0 CTATACTGATTAAAGGGCCTAATGATCACACCATTGCGCAAATTAAGGATGCTGTTCGCG 1260
consensus_10832#1 ------------------------------------------------------------
consensus_10832#0 ATGGTCTAAGATCTGTTAAGAATACGGTTGAGGATGAAGTAGTTGTGCTGGGAGCAGGAG 1320
consensus_10832#1 ------------------------------------------------------------
consensus_10832#0 CATTTGAGGTTGCTGCGAAGAAGCATCTTATTGACAACGTGAAGAAAACTGTCAAAGGAC 1380
consensus_10832#1 ------------------------------------------------------------
consensus_10832#0 GAGCACAACTTGGGGTGGAGGCATTTGCTGATGCTCTTCTTGTCATACCCAAAACACTAG 1440
consensus_10832#1 ------------------------------------------------------------
consensus_10832#0 CAGAAAATTCAGGTCTAGATACCCAAGATGTTATTGTCTCTCTCCAGAATGAACATGATC 1500
consensus_10832#1 ------------------------------------------------------------
consensus_10832#0 GTGGATTGGTGGTGGGATTGAACCATCACTCTGGCGAACCAATTGATCCCCAAATGGAGG 1560
consensus_10832#1 ------------------------------------------------------------
consensus_10832#0 GCATCTTCGACAATTACTCCGTGAAACGCCAGATCATCAATTCCGGACCCATCATCGCGT 1620
consensus_10832#1 ------------------------------CGAGGACGAGACAAGGGGGTAACA----GA 26
** * * ** * ** *
consensus_10832#0 CACAGTTATTGCTTGTGGATGAAGTGATCAGGGCTGGCCGCAACATGAGGAAACCAACCT 1680
consensus_10832#1 TTTACTTGTAATCTTTGTNCACTGTCATTTATGCCGTCCTGATGATTTGGGAATCAGTAT 86
* ** * * ** ** ** ** * ** * ** ** ** ** *
consensus_10832#0 AATACTTTCCCTACCTGCCGCTGAGTCCTCTGTT---TTGTGGGAGATATTACGCATTTT 1737
consensus_10832#1 GTGCTTATGCTTTCATGTCATTTGTTCTCACGTTGAACTAAGCGGAATGCACCAAATTTT 146
* * * * * ** * * ** *** * * * ** * *****
consensus_10832#0 GTTTGGTTATTTTGCCTTTCTATCTTTAGTTTGTGCGTAGTAGTGAGGTGGGTGAAATGT 1797
consensus_10832#1 GTTTGGTGAGTTGTCGATTACCCATTTGCTTTGGCTATATATAGAAAGAGGCTAATGCGT 206
******* * ** * ** *** **** ** * * ** * * **
consensus_10832#0 CCGGAGGTTCTGCTAGTTTGTTCCTCTTTGACTGTAACAGATTTCACTTGTAATCTTTGT 1857
consensus_10832#1 ------------------------------------------------------------
consensus_10832#0 CACACTGTCATTTATGCCGTCCTGATGATTTGGGAATCAGTATGTGCTTATGCTTTCATG 1917
consensus_10832#1 ------------------------------------------------------------
consensus_10832#0 TCAAAAA 1924
consensus_10832#1 -------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||