These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10845#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1541 fasta sequence [TCTCCCGTCCCGTCTCCTCAGCTCCTTGCGCCATCTCGCTGCTGAACAGGGAGGGACGCTGATCTCCATCTGGCGAGCAGAGGAGGGGAGTGGAGGGGATCCTGTTGGGAGATGGCTGGGTTTATGTCAAGAGGCCCCCCAAATGGTTCTGTTTATGTATGCAATCTGCCTCCTGGAACCGATGAGACCATGCTGGCTGAATATTTTGGCACCATAGGGTTGCTAAAGAAGGACAAAAGGACTGGGCGTCCAAAAATCTGGATATATAGGGACAAAGTTACCAATGAACCAAAGGGTGATGCGACAGTCACCTATGAAGATCCGCATGCTGCTTCAGCTGCAGTAGAGTGGTTCAATAACAAAGATTTCCATGGAAGCACCATTCAGGTTCATATAGCTGAGTCAAAAAACAAAGACATGAATGATAGCTCTGCAACTGCAAGTTTGAACAACTCTGCTGAACTTGGTGGACAAGATGAATTAGATAACGGGGAAGGCAGAGGGAGAGGGCGCGGTGATGGTCCAGGAAAAGCCTGGCAGCAAGATGGGGATTGGCTGTGCCCAAATACAAGTTGTGGCAATGTAAACTTTGCCTTTCGTGGTGTCTGTAATCTCTGTGGAGCTGCTCGCCCTGCTGGTGTTAGTGGATCAAGTGCTGGTGGTGGTGGTAGGGGTAGAGGCCGTGGAAGTGATGATGCAAGAGGAGGCAGCCGTGCTGCTGCTGCTGCTGCTGTTGGTGGTCCTCCTGGACTGTTTGGTCCAAATGATTGGCCTTGCCCAATGTGTGGCAACATAAATTGGGCAAAGCGGATGAAATGTAATATCTGTAACACCACCAAGCCAGGTCACAATGAAGGTGGTGTTAGAGGTGGCCGGGGTGGCGGGTATAAAGAACTTGATGAAGAAGAACTAGAGGAAGTTAAAAGGCGCCGCAAAGAGGCTGAAGAGGATGACGGAGAGATGTATGATGAATTTGGCAACCTCAAAAAGAAATTTCGTGCTAAAACACAACAAACTGAAAATGCACCAACTCTTCCTGGGTCTGGACGTGCTGGATGGGAGGTCGAGCAACGTGGCTCCACTGGAAGAGAAGGCAAGGAAAGGAGCAGAGATCAGGGCAGAGACCATGACTACGATGAACGGGATAGCAGGAACAGAGATAGAGGCAGTCATGGAAGGGAGCGGCGCCGAAGTAGAGACCGTGAGAAGGAAAGGGGGAGGGACACGGGCAGAGATCACAGCTATGAGAGGAGCTGGGAGCGAGGAACCGAGCGTGACCATGATCGCTATAGATGAATACGATGGCAGATTTTCGCATGTTGCATGCCGATTTTGGTTTTATGATACTTCCGTTTTGCTGCTGGATAGCTATGCTGCTTCAGCTAGTGCTGTCAGATGGGTTTGCACATTATTTGTCTTGGCCTGATGGCAGTTTATATCTTTGAATGTTTGGATGCACTGGACCACTAAACTTTGATTAAATGTGCTATGTACTTTGGGAGTGTTTTCATGTGAAAAAAAAAAAAAAAAAAAATAAAAAG] [+] EMBL AK064362 [TCTCCCGTCCCGTCTCCTCAGCTCCTTGCGCCATCTCGCTGCTGAACAGGGAGGGACGCTGATCTCCATCTGGCGAGCAGAGGAGGGGAGTGGAGGGGATCCTGTTGGGAGATGGCTGGGTTTATGTCAAGAGGCCCCCCAAATGGTTCTGTTTATGTATGCAATCTGCCTCCTGGAACCGATGAGACCATGCTGGCTGAATATTTTGGCACCATAGGGTTGCTAAAGAAGGACAAAAGGACTGGGCGTCCAAAAATCTGGATATATAGGGACAAAGTTACCAATGAACCAAAGGGTGATGCGACAGTCACCTATGAAGATCCGCATGCTGCTTCAGCTGCAGTAGAGTGGTTCAATAACAAAGATTTCCATGGAAGCACCATTCAGGTTCATATAGCTGAGTCAAAAAACAAAGACATGAATGATAGCTCTGCAACTGCAAGTTTGAACAACTCTGCTGAACTTGGTGGACAAGATGAATTAGATAACGGGGAAGGCAGAGGGAGAGGGCGCGGTGATGGTCCAGGAAAAGCCTGGCAGCAAGATGGGGATTGGCTGTGCCCAAATACAAGTTGTGGCAATGTAAACTTTGCCTTTCGTGGTGTCTGTAATCTCTGTGGAGCTGCTCGCCCTGCTGGTGTTAGTGGATCAAGTGCTGGTGGTGGTGGTAGGGGTAGAGGCCGTGGAAGTGATGATGCAAGAGGAGGCAGCCGTGCTGCTGCTGCTGCTGCTGTTGGTGGTCCTCCTGGACTGTTTGGTCCAAATGATTGGCCTTGCCCAATGTGTGGCAACATAAATTGGGCAAAGCGGATGAAATGTAATATCTGTAACACCACCAAGCCAGGTCACAATGAAGGTGGTGTTAGAGGTGGCCGGGGTGGCGGGTATAAAGAACTTGATGAAGAAGAACTAGAGGAAGTTAAAAGGCGCCGCAAAGAGGCTGAAGAGGATGACGGAGAGATGTATGATGAATTTGGCAACCTCAAAAAGAAATTTCGTGCTAAAACACAACAAACTGAAAATGCACCAACTCTTCCTGGGTCTGGACGTGCTGGATGGGAGGTCGAGCAACGTGGCTCCACTGGAAGAGAAGGCAAGGAAAGGAGCAGAGATCAGGGCAGAGACCATGACTACGATGAACGGGATAGCAGGAACAGAGATAGAGGCAGTCATGGAAGGGAGCGGCGCCGAAGTAGAGACCGTGAGAAGGAAAGGGGGAGGGACACGGGCAGAGATCACAGCTATGAGAGGAGCTGGGAGCGAGGAACCGAGCGTGACCATGATCGCTATAGATGAATACGATGGCAGATTTTCGCATGTTGCATGCCGATTTTGGTTTTATGATACTTCCGTTTTGCTGCTGGATAGCTATGCTGCTTCAGCTAGTGCTGTCAGATGGGTTTGCACATTATTTGTCTTGGCCTGATGGCAGTTTATATCTTTGAATGTTTGGATGCACTGGACCACTAAACTTTGATTAAATGTGCTATGTACTTTGGGAGTG ] [+] EMBL CB642906 [ TCTCCTCTGCTCCTTGCGCCATCTCGCTGCTGAACAGGGAGGGACGCTGATCTCCATCTGGCGAGCAGAGGAGGGGAGTGGAGGGGATCCTGTTGGGAGATGGCTGGGTTTATGTCAAGAGGCCCCCCAAATGGTTCTGTTTATGTATGCAATCTGCCTCCTGGAACCGATGAGACCATGCTGGCTGAATATTTTGGCACCATAGGGTTGCTAAAGAAGGACAAAAGGACTGGGCGTCCAAAAATCTGGATATATAGGGACAAAGTTACCAATGAACCAAAGGGTGATGCGACAGTCACCTATGAAGATCCGCATGCTGCTTCAGCTGCAGTAGAATGGTTCAATAACAAAGATTTCCATGGAAGCACCATTCAGGTTCATATAGCTGAGTCAAAAAACAAAGACATGAATGATAGCTCTGCAACTGCAAGTTTGAACAACTCTGCTGAACTTGGTGGACAAGATGAATTAGATAACGGGGAAGGCAGAGGGAGAGGGCGCGGTGATGGTCCAGGAAAAGCCTGGCAGCAAGATGGGGATTGGCTGTGCCCAAATACAAGTTGTGGCAATGTAAACTTTGCCTTTCGTGGTGTCTGTAATCTCTGTGGAGCTGCTCGCCCTGCTGGTGTTAGTGGATCAAGTGCTGGTGGTGGTGGTAGGGGTAGAGGCCGTGGAAGTGATGATGCAAGAGGAGGCAGCCGTGCTGCTGCTGCTGCTGCTGTTGGTGGTCCTCCTGGACTGTTTGGTCCAAATGATTGGCCTTGCCCCATGTGTGGCAACATA ] [-] EMBL CB642907 [ GCTGTTGGTGGTCCTCCTGGACTGTTTGGTCCAAATGATTGGCCTTGCCCAATGTGTGGCAACATAAATTGGGCAAAGCGGATGAAATGTAATATCTGTAACACCACCAAGCCAGGTCACAATGAAGGTGGTGTTAGAGGTGGCCGGGGTGGTGGGTATAAAGAACTTGATGAAGAAGAACTAGAGGAAGTTAAAAGGCGCCGCAAAGAGGCTGAAGAGGATGACGGAGAGATGTATGATGAATTTGGCAACCTCAAAAAGAAATTTCGTGCTAAAACACAACAAACTGAAAATGCCCCAACTCTTCCTGGGTTTGGACGTGCTGGATGGGAGGTCGAGCAACGTGGCTCCCCTGGAAGAGAAGGCAAGGAAAGGAGCAGAGATCAGGGCAGAGACCATGACTTCGATGAACGGGATAGCAGGAACAGAGATAGAGGCAGTCATGGAAGGGAGCGGCGCCGAAGTAGAGACCGTGAGAAGGAAAGGGGGAGGGACACGGGCAGAGATCACAGCTATGAGAGGAGCTGGGAGCGAGGAACCGAGCGTGACCATGATCGCTATAGATGAATACGATGGCAGATTTTCGCATGTTGCATGCCGATTTTGGTTTTATGATACTTCCGTTTTGCTGCTGGATAGCTATGCTGCTTCAGCTAGTGCTGTCAGATGGGTTTGCACATTATTTGTTTTGGCCTGATGGCAGTTTATATCTTTGAATGTTTGGATGCACTGGACCCCTAAACTTTGATTAAATGTGCTATGTACTTTGGGGGTGTTTTCATGTGAAAAAAAAAAAAAAAAAAAATAAAAAG] consensusID : consensus_10845#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1471 fasta sequence [CGCCATCTCGCTGCTGAACAGGGAGGGACGCTGATCTCCTTCTGGCGAGCAGAGGAGGGGAGTGGAGGGGATCCTGTTGGGAGATGGCTGGGTTTATGTCAAGAGGCCCCCCAAATGGTTCTGTTTATGTATGCAATCTGCCTCCTGGAACCGATGAGACCATGCTGGCTGAATATTTTGGCACCATAGGGTTGCTAAAGGTATGGGGTCTTCCCAGAAGGACAAAAGGACTGGGCGTCCAAAAATCTGGATATATAGGGACAAAGTTACCAATGAACCAAAGGGTGATGCGACAGTCACCTATGAAGATCCGCATGCTGCTTCAGCTGCAGTAGAATGGTTCAATAACAAAGATTTCCATGGAAGCACCATTCAGGTTCATATAGCTGAGTCAAAAAACAAAGACATGAATGATAGCTCTGCAACTGCAAGTTTGAACAACTCTGCTGAACTTGGTGGACAAGATGAATTAGATAACGGGGAAGGCAGAGGGAGAGGGCGCGGTGATGGTCCAGGAAAAGCCTGGCAGCAAGATGGGGATTGGCTGTGCCCAAATACAAGTTGTGGCAATGTAAACTTTGCCTTTCGTGGTGTCTGTAATCTCTGTGGAGCTGCTCGCCCTGCTGGTGTTAGTGGATCAAGTGCTGGTGGTGGTGGTAGGGGTAGAGGCCGTGGAAGTGATGATGCAAGAGGAGGCAGCCGTGCTGCTGCTGCTGCTGCTGTTGGTGGTCCTCCTGGACTGTTTGGTCCAAATGATTGGCCTTGCCCAATGTGTGGCAACATAAATTGGGCAAAGCGGATGAAATGTAATATCTGTAACACCACCAAGCCAGGTCACAATGAAGGTGGTGTTAGAGGTGGCCGGGGTGGTGGGTATAAAGAACTTGATGAAGAAGAACTAGAGGAAGTTAAAAGGCGCCGCAAAGAGGCTGAAGAGGATGACGGAGAGATGTATGATGAATTTGGCAACCTCAAAAAGAAATTTCGTGCTAAAACACAACAAACTGAAAATGCACCAACTCTTCCTGGGTCTGGACGTGCTGGATGGGAGGTCGAGCAACGTGGCTCCACTGGAAGAGAAGGCAAGGAAAGGAGCAGAGATCAGGGCAGAGACCATGACTACGATGAACGGGATAGCAGGAACAGAGATAGAGGCAGTCATGGAAGGGAGCGGCGCCGAAGTAGAGACCGTGAGAAGGAAAGGGGGAGGGACACGGGCAGAGATCACAGCTATGAGAGGAGCTGGGAGCGAGGAACCGAGCGTGACCATGATCGCTATAGATGAATACGATGGCAGATTTTCGCATGTTGCATGCCGATTTTGGTTTTATGATACTTCCGTTTTGCTGCTGGATAGCTATGCTGCTTCAGCTAGTGCTGTCAGATGGGTTTGCACATTATTTGTCTTGGCCTGATGGCAGTTTATATCTTTGAATGTTTGGATGCACTGGACCACTAAACTTTGATTAAA] [+] EMBL AK103153 [CGCCATCTCGCTGCTGAACAGGGAGGGACGCTGATCTCCTTCTGGCGAGCAGAGGAGGGGAGTGGAGGGGATCCTGTTGGGAGATGGCTGGGTTTATGTCAAGAGGCCCCCCAAATGGTTCTGTTTATGTATGCAATCTGCCTCCTGGAACCGATGAGACCATGCTGGCTGAATATTTTGGCACCATAGGGTTGCTAAAGGTATGGGGTCTTCCCAGAAGGACAAAAGGACTGGGCGTCCAAAAATCTGGATATATAGGGACAAAGTTACCAATGAACCAAAGGGTGATGCGACAGTCACCTATGAAGATCCGCATGCTGCTTCAGCTGCAGTAGAATGGTTCAATAACAAAGATTTCCATGGAAGCACCATTCAGGTTCATATAGCTGAGTCAAAAAACAAAGACATGAATGATAGCTCTGCAACTGCAAGTTTGAACAACTCTGCTGAACTTGGTGGACAAGATGAATTAGATAACGGGGAAGGCAGAGGGAGAGGGCGCGGTGATGGTCCAGGAAAAGCCTGGCAGCAAGATGGGGATTGGCTGTGCCCAAATACAAGTTGTGGCAATGTAAACTTTGCCTTTCGTGGTGTCTGTAATCTCTGTGGAGCTGCTCGCCCTGCTGGTGTTAGTGGATCAAGTGCTGGTGGTGGTGGTAGGGGTAGAGGCCGTGGAAGTGATGATGCAAGAGGAGGCAGCCGTGCTGCTGCTGCTGCTGCTGTTGGTGGTCCTCCTGGACTGTTTGGTCCAAATGATTGGCCTTGCCCAATGTGTGGCAACATAAATTGGGCAAAGCGGATGAAATGTAATATCTGTAACACCACCAAGCCAGGTCACAATGAAGGTGGTGTTAGAGGTGGCCGGGGTGGTGGGTATAAAGAACTTGATGAAGAAGAACTAGAGGAAGTTAAAAGGCGCCGCAAAGAGGCTGAAGAGGATGACGGAGAGATGTATGATGAATTTGGCAACCTCAAAAAGAAATTTCGTGCTAAAACACAACAAACTGAAAATGCACCAACTCTTCCTGGGTCTGGACGTGCTGGATGGGAGGTCGAGCAACGTGGCTCCACTGGAAGAGAAGGCAAGGAAAGGAGCAGAGATCAGGGCAGAGACCATGACTACGATGAACGGGATAGCAGGAACAGAGATAGAGGCAGTCATGGAAGGGAGCGGCGCCGAAGTAGAGACCGTGAGAAGGAAAGGGGGAGGGACACGGGCAGAGATCACAGCTATGAGAGGAGCTGGGAGCGAGGAACCGAGCGTGACCATGATCGCTATAGATGAATACGATGGCAGATTTTCGCATGTTGCATGCCGATTTTGGTTTTATGATACTTCCGTTTTGCTGCTGGATAGCTATGCTGCTTCAGCTAGTGCTGTCAGATGGGTTTGCACATTATTTGTCTTGGCCTGATGGCAGTTTATATCTTTGAATGTTTGGATGCACTGGACCACTAAACTTTGATTAAA] consensusID : consensus_10845#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 729 fasta sequence [CTCTCCCCATTCCACCACCACCCGCCGCCGCCGCCTCCGCCGCGTGGGTCGCCTCCGCCGCCCGATCCCCTCCTCCGGGCTCGCGCCTCAAGCCGGAGCGCCGCAG-TTGGGAGATGGCTGGGTATATGTCAAGAGGCCCCCCAAATGGCTCTGTTTATGTGTGCAATCTGCCTCCTGGAACCGATGAGACCATGCTGGCCGATTATTTTGGCACCATAGGGTTGCTGAAGAAGGATAAAAGGACCGGTCGTCCAAAAATCTGGATTTACAGGGACAAGGTTACCAATGAACCAGAGGGTGACGCGACAGTCACCTATGAAGACCCACATGCTGCTTCAGCTGCAGTATAATGGTTCAATAACAAGGATTTCCATGGAAGCACCATTCAGGTCCATATAGCTGAGTCGAAAAACAAAGACACATATGACAACTCGGCGAGGTTGAACAACTCTGCTGGCCTTGGTGGACAAGATGAATTGGACAACGGGGCAGGCAGAGGGAGAGGGCACGGTGATGGTCCAGGAAAAGCCTGGCAGCAAGATGGGGATTGGCTGTGCCCAAATACGAGGTCTGTTTTGATTGTTGTGGCAATGGAAACTTTGCCTTTCGTGGTGTCTGTAATCGCTGTGGAGCTGCTCGCCCTGCCGGTGTTAGTGGATCACGTGCCGGTGGTGGTGGTAGGGGTATAGGCCGTGGAAGTGACGATGCAAAAGGACGCAGCCGTGCTGC] [+] EMBL CB681241 [CTCTCCCCATTCCACCACCACCCGCCGCCGCCGCCTCCGCCGCGTGGGTCGCCTCCGCCGCCCGATCCCCTCCTCCGGGCTCGCGCCTCAAGCCGGAGCGCCGCAG TTGGGAGATGGCTGGGTATATGTCAAGAGGCCCCCCAAATGGCTCTGTTTATGTGTGCAATCTGCCTCCTGGAACCGATGAGACCATGCTGGCCGATTATTTTGGCACCATAGGGTTGCTGAAGAAGGATAAAAGGACCGGTCGTCCAAAAATCTGGATTTACAGGGACAAGGTTACCAATGAACCAGAGGGTGACGCGACAGTCACCTATGAAGACCCACATGCTGCTTCAGCTGCAGTATAATGGTTCAATAACAAGGATTTCCATGGAAGCACCATTCAGGTCCATATAGCTGAGTCGAAAAACAAAGACACATATGACAACTCGGCGAGGTTGAACAACTCTGCTGGCCTTGGTGGACAAGATGAATTGGACAACGGGGCAGGCAGAGGGAGAGGGCACGGTGATGGTCCAGGAAAAGCCTGGCAGCAAGATGGGGATTGGCTGTGCCCAAATACGAGGTCTGTTTTGATTGTTGTGGCAATGGAAACTTTGCCTTTCGTGGTGTCTGTAATCGCTGTGGAGCTGCTCGCCCTGCCGGTGTTAGTGGATCACGTGCCGGTGGTGGTGGTAGGGGTATAGGCCGTGGAAGTGACGATGCAAAAGGACGCAGC ] [+] EMBL CB667486 [ cgtcctTCGCCTCCGCCGCCCGATCCCCTCCTCCGGGCTCGCGCCTCGAGCCGGAGCGCCGCAGATTGGGAGATGGCTGGGTATATGTCAAGAGGCCCCCCAAATGGCTCTGTTTATGTGTGCAATCTGCCTCCTGGAACCGATGAGACCATGCTGGCCGATTATTTTGGCACCATAGGGTTGCTGAAGAAGGATAAAAGGACCGGTCGTCCAAAAATCTGGATTTACAGGGACAAGGTTACCAATGAACCAAAGGGTGACGCGACAGTCACCTATGAAGACCCACATGCTGCTTCAGCTGCAGTAGAATGGTTCAATAACAAGGATTTCCATGGAAGCACCATTCAGGTCCATATAGCTGAGTCAAAAAACAAAGACACATATGACAACTCGGCGAGTTTGAACAACTCTGCTGGCCTTGGTGGACAAGATGAATTGGACAACGGGGCAGGCAGAGGGAGAGGGCACGGTGATGGTCCAGGAAAAGCCTGGCAGCAAGATGGGGATTGGCTGTGCCCAAATACAAGGTCTGTTTTGATTGTTGTGGCAATGTAAACTTTGCCTTTCGTGGTGTCTGTAATCGCTGTGGAGCTGCTCGCCCTGCCGGTGTTAGTGGATCACGTGCCGGTGGTGGTGGTAGGGGTAGAGGCCGTGGAAGTGACGATGCAAAAGGACGCAGCCGTGCTGC] consensusID : consensus_10845#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 723 fasta sequence [AGAGGAGGCCGGGGTGGTGGGTATAAAGAACTTGATGAAGAAGAACTAGAGGAAGTTAAAAGGCGCCGCAAAGAGGCTGAAGAGGATGACGGGGAGATGTATGATGAATTTGGCAACCTCAAAAAGAAATTCCGTGCTAAAACACAGCAAACTGAAAATGCACCAACCCTTCCTGGGTCTGGACGGGCTGGATGGGAGGTTGAGCAACGTGGTTCAACTAGAAGAGAAAGCAGGGAAAGGAGCAGAGATCGAGGCAGAGACCATGACTACAATGAACGGGATAGCAGGAACAGAGATAGAGGCAGTCATGGGAGAGAGCGGCGCCGAAGCCGAAGTAGAAGTAGAGACCGTGAGAAGGAAAGAGGGAGGGACAGGGGCAGAGACCACAGCTATGAGAGGAGCTGGGAGCGAGGAGCCGAGCGTGACCGTGATCGCTATAGGTGAATACTTCATGCCAGGATCATCACACGCTGCATGCCGATTTTTGGTTTTCCGATACTTCTGTTTTGTTGCTGGATAGCTATGCTGCTTCAGCTATTTCTGTTGGATGCGGTTGCACATTGTCTGTCTTAGCCTGATGACAGTTTATATCTTCGGACTTCTCGATGAACTAGACCACTAAGCTCTGATTAAATGTGCTATGTCCCTTGGGAGTATTTTTCATGTAAGATTTTACCGTGAATGCTGTCCACCTGGATTAGGGAATTAATTTTAAGGATATTG] [-] EMBL CB681242 [AGAGGAGGCCGGGGTGGTGGGTATAAAGAACTTGATGAAGAAGAACTAGAGGAAGTTAAAAGGCGCCGCAAAGAGGCTGAAGAGGATGACGGGGAGATGTATGATGAATTTGGCAACCTCAAAAAGAAATTCCGTGCTAAAACACAGCAAACTGAAAATGCACCAACCCTTCCTGGGTCTGGACGGGCTGGATGGGAGGTTGAGCAACGTGGTTCAACTAGAAGAGAAAGCAGGGAAAGGAGCAGAGATCGAGGCAGAGACCATGACTACAATGAACGGGATAGCAGGAACAGAGATAGAGGCAGTCATGGGAGAGAGCGGCGCCGAAGCCGAAGTAGAAGTAGAGACCGTGAGAAGGAAAGAGGGAGGGACAGGGGCAGAGACCACAGCTATGAGAGGAGCTGGGAGCGAGGAGCCGAGCGTGACCGTGATCGCTATAGGTGAATACTTCATGCCAGGATCATCACACGCTGCATGCCGATTTTTGGTTTTCCGATACTTCTGTTTTGTTGCTGGATAGCTATGCTGCTTCAGCTATTTCTGTTGGATGCGGTTGCACATTGTCTGTCTTAGCCTGATGACAGTTTATATCTTCGGACTTCTCGATGAACTAGACCACTAAGCTCTGATTAAATGTGCTATGTCCCTTGGGAGTATTTTTCATGTAAGATTTTACCGTGAATGCTGTCCACCTGGATTAGGGAATTAATTTTAAGGATATTG] consensusID : consensus_10845#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 590 fasta sequence [TGATAGCTCTGCAACTGCAAGTTTGAACAACTCTGCTGAACTTGGTGGACAAGATGAATTAGATAACGGGGAAGGCAGGGGGAGAGGGCGCGGTGATGGTCCAGGAAAAGCCTGGCAGCAAGATGGGGATTGGCTGTGCCCAAATACAAGTTGTGGCAATGTAAACTTTGCCTTTCGTGGTGTCTGTAATCTCTGTGGAGCTGCTCGCCCTGCTGGTGTTAGTGGATCAAGTGCTGGTGGTGGTGGTAGGGGTAGAGGCCGTGGAAGTGATGATGCAAGAGGAGGCAGCCGTGCTGCTGCTGCTGCTGCTGTTGGTGGTCCTCCTGGACTGTTTGGTCCAAATGATTGGCCTTGCCCAATGTACGAACACCCACAGAAGCTTGCTGTTTCCTAACTTGTTCTGTCCTCTCCTTATCTGTATTTATTATTATCTGTTGCCTGTCTGGCCTATGAACCCATTGGGCAGTGCTCTCTATGCCTATTTGTGCCTGTTCAAATCATCAATATTATTTGTACCCTGTGTTTATGCACCATTGGAGAAACACTTAATATTGGTAATAATAGCTATTAGAAAATTAAATTTCAAAAAA] [+] EMBL BI802494 [TGATAGCTCTGCAACTGCAAGTTTGAACAACTCTGCTGAACTTGGTGGACAAGATGAATTAGATAACGGGGAAGGCAGGGGGAGAGGGCGCGGTGATGGTCCAGGAAAAGCCTGGCAGCAAGATGGGGATTGGCTGTGCCCAAATACAAGTTGTGGCAATGTAAACTTTGCCTTTCGTGGTGTCTGTAATCTCTGTGGAGCTGCTCGCCCTGCTGGTGTTAGTGGATCAAGTGCTGGTGGTGGTGGTAGGGGTAGAGGCCGTGGAAGTGATGATGCAAGAGGAGGCAGCCGTGCTGCTGCTGCTGCTGCTGTTGGTGGTCCTCCTGGACTGTTTGGTCCAAATGATTGGCCTTGCCCAATGTACGAACACCCACAGAAGCTTGCTGTTTCCTAACTTGTTCTGTCCTCTCCTTATCTGTATTTATTATTATCTGTTGCCTGTCTGGCCTATGAACCCATTGGGCAGTGCTCTCTATGCCTATTTGTGCCTGTTCAAATCATCAATATTATTTGTACCCTGTGTTTATGCACCATTGGAGAAACACTTAATATTGGTAATAATAGCTATTAGAAAATTAAATTTCAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10845#0 TCTCCCGTCCCGTCTCCTCAGCTCCTTGCGCCATCTCGCTGCTGAACAGGGAGGGACGCT 60 consensus_10845#3 ------------------------------------------------------------ consensus_10845#1 -----------CGCCATCTCGCTGCTGAACAGGGAGGGACGCTGATCTCCTTCTGGCGAG 49 consensus_10845#2 ------------------------------------------------------------ consensus_10845#4 ------------------------------------------------------------ consensus_10845#0 GATCTCCATCTGGCGAGCAGAGGAGGGGAGTGGAGGGGATCCTGTTGGGAGATGGCTGGG 120 consensus_10845#3 ------------------------------------------------------------ consensus_10845#1 CAGAGGAGGGGAGTGGAGGGGATCCTGTTGGGAGATGGCTGGGTTTATGTCAAGAGGCCC 109 consensus_10845#2 ------------------------------------------------------------ consensus_10845#4 ------------------------------------------------------------ consensus_10845#0 TTTATGTCAAGAGGCCCCCCAAATGGTTCTGTTTATGTATGCAATCTGCCTCCTGGAACC 180 consensus_10845#3 ------------------------------------------------------------ consensus_10845#1 CCCAAATGGTTCTGTTTATGTATGCAATCTGCCTCCTGGAACCGATGAGACCATGCTGGC 169 consensus_10845#2 ------------------------------------------------------------ consensus_10845#4 ------------------------------------------------------------ consensus_10845#0 GATGAGACCATGCTGGCTGAATATTTTGGCACCATAGGGTTGCTAAAGAAGGACAAAAGG 240 consensus_10845#3 ------------------------------------------------------------ consensus_10845#1 TGAATATTTTGGCACCATAGGGTTGCTAAAGGTATGGGGTCTTCCCAGAAGGACAAAAGG 229 consensus_10845#2 ------------------------------------------------------------ consensus_10845#4 ------------------------------------------------------------ consensus_10845#0 ACTGGGCGTCCAAAAATCTGGATATATAGGGACAAAGTTACCAATGAACCAAAGGGTGAT 300 consensus_10845#3 ------------------------------------------------------------ consensus_10845#1 ACTGGGCGTCCAAAAATCTGGATATATAGGGACAAAGTTACCAATGAACCAAAGGGTGAT 289 consensus_10845#2 ------------------------------------------------------------ consensus_10845#4 ------------------------------------------------------------ consensus_10845#0 GCGACAGTCACCTATGAAGATCCGCATGCTGCTTCAGCTGCAGTAGAGTGGTTCAATAAC 360 consensus_10845#3 ------------------------------------------------------------ consensus_10845#1 GCGACAGTCACCTATGAAGATCCGCATGCTGCTTCAGCTGCAGTAGAATGGTTCAATAAC 349 consensus_10845#2 ------------------------------------------------------------ consensus_10845#4 ------------------------------------------------------------ consensus_10845#0 AAAGATTTCCATGGAAGCACCATTCAGGTTCATATAGCTGAGTCAAAAAACAAAGACATG 420 consensus_10845#3 ------------------------------------------------------------ consensus_10845#1 AAAGATTTCCATGGAAGCACCATTCAGGTTCATATAGCTGAGTCAAAAAACAAAGACATG 409 consensus_10845#2 ------------------------------------------------------------ consensus_10845#4 ------------------------------------------------------------ consensus_10845#0 AATGATAGCTCTGCAACTGCAAGTTTGAACAACTCTGCTGAACTTGGTGGACAAGATGAA 480 consensus_10845#3 ------------------------------------------------------------ consensus_10845#1 AATGATAGCTCTGCAACTGCAAGTTTGAACAACTCTGCTGAACTTGGTGGACAAGATGAA 469 consensus_10845#2 ------------------------------------------------------------ consensus_10845#4 ------------------------------------------------------------ consensus_10845#0 TTAGATAACGGGGAAGGCAGAGGGAGAGGGCGCGGTGATGGTCCAGGAAAAGCCTGGCAG 540 consensus_10845#3 ------------------------------------------------------------ consensus_10845#1 TTAGATAACGGGGAAGGCAGAGGGAGAGGGCGCGGTGATGGTCCAGGAAAAGCCTGGCAG 529 consensus_10845#2 ------------------------------------------------------------ consensus_10845#4 ------------------------------------------------------------ consensus_10845#0 CAAGATGGGGATTGGCTGTGCCCAAATACAAGTTGTGGCAATGTAAACTTTGCCTTTCGT 600 consensus_10845#3 ------------------------------------------------------------ consensus_10845#1 CAAGATGGGGATTGGCTGTGCCCAAATACAAGTTGTGGCAATGTAAACTTTGCCTTTCGT 589 consensus_10845#2 ------------------------------------------------------------ consensus_10845#4 ------------------------------------------------------------ consensus_10845#0 GGTGTCTGTAATCTCTGTGGAGCTGCTCGCCCTGCTGGTGTTAGTGGATCAAGTGCTGGT 660 consensus_10845#3 ------------------------------------------------------------ consensus_10845#1 GGTGTCTGTAATCTCTGTGGAGCTGCTCGCCCTGCTGGTGTTAGTGGATCAAGTGCTGGT 649 consensus_10845#2 ------------------------------------------------------------ consensus_10845#4 ------------------------------------------------------------ consensus_10845#0 GGTGGTGGTAGGGGTAGAGGCCGTGGAAGTGATGATGCAAGAGGAGGCAGCCGTGCTGCT 720 consensus_10845#3 ------------------------------------------------------------ consensus_10845#1 GGTGGTGGTAGGGGTAGAGGCCGTGGAAGTGATGATGCAAGAGGAGGCAGCCGTGCTGCT 709 consensus_10845#2 ------------------------------------------------------------ consensus_10845#4 ------------------------------------------------------------ consensus_10845#0 GCTGCTGCTGCTGTTGGTGGTCCTCCTGGACTGTTTGGTCCAAATGATTGGCCTTGCCCA 780 consensus_10845#3 ------------------------------------------------------------ consensus_10845#1 GCTGCTGCTGCTGTTGGTGGTCCTCCTGGACTGTTTGGTCCAAATGATTGGCCTTGCCCA 769 consensus_10845#2 ------------------------------------------------------------ consensus_10845#4 ------------------------------------------------------------ consensus_10845#0 ATGTGTGGCAACATAAATTGGGCAAAGCGGATGAAATGTAATATCTGTAACACCACCAAG 840 consensus_10845#3 ------------------------------------------------------------ consensus_10845#1 ATGTGTGGCAACATAAATTGGGCAAAGCGGATGAAATGTAATATCTGTAACACCACCAAG 829 consensus_10845#2 ------------------------------------------------------------ consensus_10845#4 ------------------------------------------------------------ consensus_10845#0 CCAGGTCACAATGAAGGTGGTGTTAGAGGTGGCCGGGGTGGCGGGT-ATAAAGAACTTGA 899 consensus_10845#3 ------------------------AGAGGAGGCCGGGGTGGTGGGT-ATAAAGAACTTGA 35 consensus_10845#1 CCAGGTCACAATGAAGGTGGTGTTAGAGGTGGCCGGGGTGGTGGGT-ATAAAGAACTTGA 888 consensus_10845#2 ---------------------CTCTCCCCATTCCACCACCACCCGCCGCCGCCGCCTCCG 39 consensus_10845#4 ------------------------------------------------------------ consensus_10845#0 TGAAGAAGAACTAGAGGAAGTTAAAAGGCGCCGCAAAGAGGCTGAAGAGGATGACGGAGA 959 consensus_10845#3 TGAAGAAGAACTAGAGGAAGTTAAAAGGCGCCGCAAAGAGGCTGAAGAGGATGACGGGGA 95 consensus_10845#1 TGAAGAAGAACTAGAGGAAGTTAAAAGGCGCCGCAAAGAGGCTGAAGAGGATGACGGAGA 948 consensus_10845#2 CCGCGTGGGTCGCCTCCGCCGCCCGATCCCCTCCTCCGGGCTCGCGCCTCAAGCCGGAGC 99 consensus_10845#4 ------------------------------------------------------------ consensus_10845#0 GATGTATGATGAATTTGGCAACCTCAAAAAGAAATTTCGTGCTAAAACACAACAAACTGA 1019 consensus_10845#3 GATGTATGATGAATTTGGCAACCTCAAAAAGAAATTCCGTGCTAAAACACAGCAAACTGA 155 consensus_10845#1 GATGTATGATGAATTTGGCAACCTCAAAAAGAAATTTCGTGCTAAAACACAACAAACTGA 1008 consensus_10845#2 GCCGCAGTTGGGAGATGGCTGGGTATATGTCAAGAGGCCCCCCAAA---TGGCTCTGTTT 156 consensus_10845#4 ------TGATAGCTCTGCAACTGCAAGTTTGAACAACTCTGCTGAA-CTTGGTGGAC--A 51 ** ** * ** consensus_10845#0 AAATGCACCAACT-CTTCCTGGGTCTGGACGTGCTGGATGGGAGGTCGAGCAACGTGGCT 1078 consensus_10845#3 AAATGCACCAACC-CTTCCTGGGTCTGGACGGGCTGGATGGGAGGTTGAGCAACGTGGTT 214 consensus_10845#1 AAATGCACCAACT-CTTCCTGGGTCTGGACGTGCTGGATGGGAGGTCGAGCAACGTGGCT 1067 consensus_10845#2 ATGTGTGCAATCTGCCTCCTGGAACCGATGAGACCATGCT---GGCCGATTATTTTGGCA 213 consensus_10845#4 AGATGAATTAGAT---------AACGGGGAAGGCAGGGGGAGAGGGCGCG-GTGATGGTC 101 * ** * * * * ** * *** consensus_10845#0 CCACTGGAAGAGAAGGCAAGGAAAGGAGCAGAGATCAGGGCAGAGACCATGACT--ACGA 1136 consensus_10845#3 CAACTAGAAGAGAAAGCAGGGAAAGGAGCAGAGATCGAGGCAGAGACCATGACT--ACAA 272 consensus_10845#1 CCACTGGAAGAGAAGGCAAGGAAAGGAGCAGAGATCAGGGCAGAGACCATGACT--ACGA 1125 consensus_10845#2 CCATAGGGTTGCTGAAGAAGGATAAAAGGACCGGTCGTCCAAAAATCTGGATTT--ACAG 271 consensus_10845#4 CAG--GAAAAGCCTGGCAGCAAGATGGGGATTGGCTGTGCCCAAATACAAGTTGTGGCAA 159 * * * * * * * * * consensus_10845#0 TGAACGGGATAGCA--GGAACAGAGATAGAGGCAGTCATGGAAGGGAGCGGCGCCGAAG- 1193 consensus_10845#3 TGAACGGGATAGCA--GGAACAGAGATAGAGGCAGTCATGGGAGAGAGCGGCGCCGAAGC 330 consensus_10845#1 TGAACGGGATAGCA--GGAACAGAGATAGAGGCAGTCATGGAAGGGAGCGGCGCCGAAG- 1182 consensus_10845#2 GGACAAGGTTACCAATGAACCAGAGGGTGACGCGACAGTCACCTATGAAGACCCACATGC 331 consensus_10845#4 TGTAAACTTTGCCT-----TTCGTGGTGTCTGTAATCTCTGTGGAGCTGCTCGCCC-TGC 213 * * * * * * * * * consensus_10845#0 -----------TAG-AGACCGTGAGAAGGAAAGGGGGAGGGACACGGGCAGAGATCACAG 1241 consensus_10845#3 CGAAGTAGAAGTAG-AGACCGTGAGAAGGAAAGAGGGAGGGACAGGGGCAGAGACCACAG 389 consensus_10845#1 -----------TAG-AGACCGTGAGAAGGAAAGGGGGAGGGACACGGGCAGAGATCACAG 1230 consensus_10845#2 TGCTTCAGCTGCAGTATAATGGTTCAATAACAAGGATTTCCATGGAAGCACCATTCAGGT 391 consensus_10845#4 TGGTGT-----TAGTGGATCA----AGTGCTGGTGGTGGTGGTAGGGGTAGAGGCCGTGG 264 ** * * * * * * consensus_10845#0 CTATGAGAGGAGCTGGGAGCGAGGAACCGAGCGTGACCATGATCGCTATAGATGAATACG 1301 consensus_10845#3 CTATGAGAGGAGCTGGGAGCGAGGAGCCGAGCGTGACCGTGATCGCTATAGGTGAATACT 449 consensus_10845#1 CTATGAGAGGAGCTGGGAGCGAGGAACCGAGCGTGACCATGATCGCTATAGATGAATACG 1290 consensus_10845#2 CCATATAGCTGAGTCGAAAAACAAAGACACATATGACAAC--TCGGCGAGGTTGAACAAC 449 consensus_10845#4 --AAGTGATGATGCAAGAGGAGGCAGCC--GTGCTGCTGCTGCTGCTGCTGTTGGTGGTC 320 * * * * * * * ** consensus_10845#0 --ATGGCAG-ATTTTC--GCATGTTGCATGCCGATTTT-GGTTTTATGATACTTCCGTTT 1355 consensus_10845#3 TCATGCCAGGATCATC--ACACGCTGCATGCCGATTTTTGGTTTTCCGATACTTCTGTTT 507 consensus_10845#1 --ATGGCAG-ATTTTC--GCATGTTGCATGCCGATTTT-GGTTTTATGATACTTCCGTTT 1344 consensus_10845#2 T-CTGCTGGCCTTGGTGGACAAGATGAATTGGACAACGGGGCAGGCAGAGGGAGAGGGCA 508 consensus_10845#4 --CTCCTGGACTGTTTGGTCCAAATGATTGGCCTTGCCCAATGTACGAACACCCACAGAA 378 * * * * ** * * consensus_10845#0 TGCTGCTGGAT-AGCTATGCTGCTTCAGCTAGTGCTG--TCAGATGGGTTTGCACATT-- 1410 consensus_10845#3 TGTTGCTGGAT-AGCTATGCTGCTTCAGCTATTTCTG--TTGGATGCGGTTGCACATT-- 562 consensus_10845#1 TGCTGCTGGAT-AGCTATGCTGCTTCAGCTAGTGCTG--TCAGATGGGTTTGCACATT-- 1399 consensus_10845#2 CGGTGATGGTCCAGGAAAAGCCTGGCAGCAAGATGGGGATTGGCTGTGCCCAAATACGAG 568 consensus_10845#4 GCTTGCTGTTT--CCTAACTTGTTCTGTCCTCTCCTTATCTGTATTTATTATTATCTGTT 436 ** ** * * * * consensus_10845#0 ATTTGTCTTGGCC-TGATGGCAGTTTATATCTTTGAATGTTTGGATGCACTGGACCACTA 1469 consensus_10845#3 GTCTGTCTTAGCC-TGATGACAGTTTATATCTTCGGACTTCTCGATGAACTAGACCACTA 621 consensus_10845#1 ATTTGTCTTGGCC-TGATGGCAGTTTATATCTTTGAATGTTTGGATGCACTGGACCACTA 1458 consensus_10845#2 GTCTGTTTTGATTGTTGTGGCAATGGA-AACTTTGCCTTTCGTGGTGTCTGTAATCGCTG 627 consensus_10845#4 GCCTGTCTGGCCTATGAACCCATTGGGCAG---TGCTCTCTATGCCTATTTGTGCC--TG 491 *** * * ** * * * * * * consensus_10845#0 AACTTTGATTAAATGTGCTATGTACTTTGGGAGTGTTTT-CA-TGTGAAAAAAAAAAAAA 1527 consensus_10845#3 AGCTCTGATTAAATGTGCTATGTCCCTTGGGAGTATTTTTCA-TGTAAGATTTTACCGTG 680 consensus_10845#1 AACTTTGATTAAA----------------------------------------------- 1471 consensus_10845#2 TGGAGCTGCTCGCCCTGCCG-GTGTTAGTGGATCACGTGCCGGTGGTGGTGGTAGGGGTA 686 consensus_10845#4 TTCAAATCATCAATATTATTTGTACCCTGTGTTTATGCACCATTGGAGAAACACTTAATA 551 * consensus_10845#0 AAAAAAATAAAAAG------------------------------ 1541 consensus_10845#3 AATGCTGTCCACCTGGATTAGGGAATTAATTTTAAGGATATTG- 723 consensus_10845#1 -------------------------------------------- consensus_10845#2 TAGGCCGTGGAAGTG-ACGATGCAAAAGGACGCAGCCGTGCTGC 729 consensus_10845#4 TTGGTAATAATAGCT-ATTAGAAAATTAAATTTCAAAAAA---- 590 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||