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Oryza sativa
cluster # 10896 cluster # 10896       Sequences # 8       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_10896#0 length = 1220 sequences # 1  
consensus_10896#1 length = 1079 sequences # 2  
consensus_10896#2 length = 1060 sequences # 4  
consensus_10896#3 length = 451 sequences # 1  

consensusID : consensus_10896#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1220
fasta sequence
                              [CTCACCAACCATGCGCCCCACCGCCGCGGCCGCCACCGCCGCCTTCGCCTCACCGGTCGTCGCGGTTCCCAGTCGCGCGGCCCCGCTCGCCGCCCGCCGCCGCCTCCGCCGCGCGAGGCGCTTCGCTGTCCGCTCCGTCGCCTCCCCTCCAACGGTCCCCAAGCCCGCGGCTCCCCCCTCCAAGACTGGGAAATGGCAGTGGACATTTGAGGATAAGCCAATAAACATTTACTATGAGGAACATGAGCATGAGACTGCTGAGAACGTGAAGAACATTCTTATGATTCCTACAATTTCTGATGTTAGCACAGTGGAGGAATGGAGGGTGGTAGCCAAAGATATTGTGGCACGAAAAGGAGAATTAGGTTACCGTGCTACAATTGTTGATTGGCCTGGTCTGGGTTATTCAGACAGGCCATCACTGAACTACAATGCTGATGTGATGGAGAATTTTCTGGTTCAGTTAATTAATTCACCAAATAGTCCTGTGGCAAATACAGATGGTGAAGTGGTAGTAGTTGGAGGAGGTCATGCAGCAACAATTGCAGTCCGTGCGGCTGGGAAGGGCCTTATAAGGCCATCTGGCATTGCTGCAGTTGCACCTACTTGGGCTGGACCCCTTCCCATTGTATTTGGCCGAGGTTCTGATATGGAGACAAGGTATGGGCTTCTACGAGGGACCCTCAGGGCCCCGGCTATTGGCTGGATGATGTACAATGTTCTGGTGAGCAACGAGAAGTCCATCCAGTCCCAGTACAAGTCTCACGTTTATGCCAACCCTGAGAACGTGACTCCAAATATCGTGGAAAGTCGCTACGAGTTAACCAAAAGGAAAGGTGCACGGTTTGTCCCGGCTGCATTCTTGACAGGCCTTGAATGCCCCTGTCCAAACAAGGGAAGAATTCCTTCAGCTGTTTGCCAAGTTGGAAGCTCTCAGAGGCGCCAAAGGCGTGACAAAATTCGTGGAGGTTCCAGGTGCCCTTCTGCCGCAGGAGGAATTCCCATCACCAGTCGCGGAGGAACTCTACAGCTTTCTGAAGGAATCATTCTCGTCAGGTAGATGAATGTGCAGTTACGACAACTACGGCAGGGTCAAATTCAACAACATCCTATACTCATACTGTACTAGAGCTTGTAGTAACAGAAGCAGCAGCATCAATTCCTGTCTGGGTGCCACATTTCCAAGCTTGGCAAACCAACCACAATTCCATATATACAGA]

[+] EMBL AK065233             [CTCACCAACCATGCGCCCCACCGCCGCGGCCGCCACCGCCGCCTTCGCCTCACCGGTCGTCGCGGTTCCCAGTCGCGCGGCCCCGCTCGCCGCCCGCCGCCGCCTCCGCCGCGCGAGGCGCTTCGCTGTCCGCTCCGTCGCCTCCCCTCCAACGGTCCCCAAGCCCGCGGCTCCCCCCTCCAAGACTGGGAAATGGCAGTGGACATTTGAGGATAAGCCAATAAACATTTACTATGAGGAACATGAGCATGAGACTGCTGAGAACGTGAAGAACATTCTTATGATTCCTACAATTTCTGATGTTAGCACAGTGGAGGAATGGAGGGTGGTAGCCAAAGATATTGTGGCACGAAAAGGAGAATTAGGTTACCGTGCTACAATTGTTGATTGGCCTGGTCTGGGTTATTCAGACAGGCCATCACTGAACTACAATGCTGATGTGATGGAGAATTTTCTGGTTCAGTTAATTAATTCACCAAATAGTCCTGTGGCAAATACAGATGGTGAAGTGGTAGTAGTTGGAGGAGGTCATGCAGCAACAATTGCAGTCCGTGCGGCTGGGAAGGGCCTTATAAGGCCATCTGGCATTGCTGCAGTTGCACCTACTTGGGCTGGACCCCTTCCCATTGTATTTGGCCGAGGTTCTGATATGGAGACAAGGTATGGGCTTCTACGAGGGACCCTCAGGGCCCCGGCTATTGGCTGGATGATGTACAATGTTCTGGTGAGCAACGAGAAGTCCATCCAGTCCCAGTACAAGTCTCACGTTTATGCCAACCCTGAGAACGTGACTCCAAATATCGTGGAAAGTCGCTACGAGTTAACCAAAAGGAAAGGTGCACGGTTTGTCCCGGCTGCATTCTTGACAGGCCTTGAATGCCCCTGTCCAAACAAGGGAAGAATTCCTTCAGCTGTTTGCCAAGTTGGAAGCTCTCAGAGGCGCCAAAGGCGTGACAAAATTCGTGGAGGTTCCAGGTGCCCTTCTGCCGCAGGAGGAATTCCCATCACCAGTCGCGGAGGAACTCTACAGCTTTCTGAAGGAATCATTCTCGTCAGGTAGATGAATGTGCAGTTACGACAACTACGGCAGGGTCAAATTCAACAACATCCTATACTCATACTGTACTAGAGCTTGTAGTAACAGAAGCAGCAGCATCAATTCCTGTCTGGGTGCCACATTTCCAAGCTTGGCAAACCAACCACAATTCCATATATACAGA]


>consensus_10896#0 CTCACCAACCATGCGCCCCACCGCCGCGGCCGCCACCGCCGCCTTCGCCTCACCGGTCGT CGCGGTTCCCAGTCGCGCGGCCCCGCTCGCCGCCCGCCGCCGCCTCCGCCGCGCGAGGCG CTTCGCTGTCCGCTCCGTCGCCTCCCCTCCAACGGTCCCCAAGCCCGCGGCTCCCCCCTC CAAGACTGGGAAATGGCAGTGGACATTTGAGGATAAGCCAATAAACATTTACTATGAGGA ACATGAGCATGAGACTGCTGAGAACGTGAAGAACATTCTTATGATTCCTACAATTTCTGA TGTTAGCACAGTGGAGGAATGGAGGGTGGTAGCCAAAGATATTGTGGCACGAAAAGGAGA ATTAGGTTACCGTGCTACAATTGTTGATTGGCCTGGTCTGGGTTATTCAGACAGGCCATC ACTGAACTACAATGCTGATGTGATGGAGAATTTTCTGGTTCAGTTAATTAATTCACCAAA TAGTCCTGTGGCAAATACAGATGGTGAAGTGGTAGTAGTTGGAGGAGGTCATGCAGCAAC AATTGCAGTCCGTGCGGCTGGGAAGGGCCTTATAAGGCCATCTGGCATTGCTGCAGTTGC ACCTACTTGGGCTGGACCCCTTCCCATTGTATTTGGCCGAGGTTCTGATATGGAGACAAG GTATGGGCTTCTACGAGGGACCCTCAGGGCCCCGGCTATTGGCTGGATGATGTACAATGT TCTGGTGAGCAACGAGAAGTCCATCCAGTCCCAGTACAAGTCTCACGTTTATGCCAACCC TGAGAACGTGACTCCAAATATCGTGGAAAGTCGCTACGAGTTAACCAAAAGGAAAGGTGC ACGGTTTGTCCCGGCTGCATTCTTGACAGGCCTTGAATGCCCCTGTCCAAACAAGGGAAG AATTCCTTCAGCTGTTTGCCAAGTTGGAAGCTCTCAGAGGCGCCAAAGGCGTGACAAAAT TCGTGGAGGTTCCAGGTGCCCTTCTGCCGCAGGAGGAATTCCCATCACCAGTCGCGGAGG AACTCTACAGCTTTCTGAAGGAATCATTCTCGTCAGGTAGATGAATGTGCAGTTACGACA ACTACGGCAGGGTCAAATTCAACAACATCCTATACTCATACTGTACTAGAGCTTGTAGTA ACAGAAGCAGCAGCATCAATTCCTGTCTGGGTGCCACATTTCCAAGCTTGGCAAACCAAC CACAATTCCATATATACAGA



consensusID : consensus_10896#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1079
fasta sequence
                              [AGCACACGTCGTTCGGTTCCTCTCCACTCCAACTCCACCGTTGCTCCCACCAAACCTCCCACTCCTTCCTCACCAACCATGCGCCCCACCGCCGCGGCCGCCACCGCCGCCTTCGCCTCACCGGTCGTCGCGGTTCCCAGTCGCGCGGCCCCGCTCGCCGCCCGCCGCCGCCTCCGCCGCGCGAGGCGCTTCGCTGTCCGCTCCGTCGCCTCCCCTCCAACGGTCCCCAAGCCCGCGGCTCCCCCCTCCAAGACTGGGAAATGGCAGTGGACATTTGAGGATAAGCCAATAAACATTTACTATGAGGAACATGAGCATGAGACTGCTGAGAACGTGAAGAACATTCTTATGATTCCTACAATTTCTGATGTTAGCACAGTGGAGGAATGGAGGGTGGTAGCCAAAGATATTGTGGCACGAAAAGGAGAATTAGGTTACCGTGCTACAATTGTTGATTGGCCTGGTCTGGGTTATTCAGACAGGCCATCACTGAACTACAATGCTGATGTGATGGAGAATTTTCTGGTTCAGTTAATTAATTCACCAAATAGTCCTGTGGCAAATACAGATGGTGAAGTGGTAGTAGTTGGAGGAGGTCATGCAGCAACAATTGCAGTCCGTGCGGCTGGGAAGGGCCTTATAAGGCCATCTGGCATTGCTGCAGTTGCACCTACTTGGGCTGGACCCCTTCCCATTGTATTTGGCCGAGGTTCTGATATGGAGACAAGGTATGGGCTTCTACGAGGGACCCTCAGGGCCCCGGCTATTGGCTGGATGATGTACAATGTTCTGGTGAGCAACGAGAAGTCCATCCAGTCCCAGTACAAGTCTCACGTTTATGCCAACCCTGAGAACGTGACTCCAAATATCGTGGAAAGTCGCTACGAGTTAACCAAAAGGAATCATTCTCGTCAGGTAGATGAATGTGCAGTTACGACAACTACGGCAGGGTCAAATTCAACAACATCCTATACTCATACTGTACTAGAGCTTGTAGTAACAGAAGCAGCAGCATCAATTCCTGTCTGGGTGCCACATTTCCAAGCTTGGCAAACCAACCACAATTCCATATATACAGA]

[+] EMBL AK061445             [AGCACACGTCGTTCGGTTCCTCTCCACTCCAACTCCACCGTTGCTCCCACCAAACCTCCCACTCCTTCCTCACCAACCATGCGCCCCACCGCCGCGGCCGCCACCGCCGCCTTCGCCTCACCGGTCGTCGCGGTTCCCAGTCGCGCGGCCCCGCTCGCCGCCCGCCGCCGCCTCCGCCGCGCGAGGCGCTTCGCTGTCCGCTCCGTCGCCTCCCCTCCAACGGTCCCCAAGCCCGCGGCTCCCCCCTCCAAGACTGGGAAATGGCAGTGGACATTTGAGGATAAGCCAATAAACATTTACTATGAGGAACATGAGCATGAGACTGCTGAGAACGTGAAGAACATTCTTATGATTCCTACAATTTCTGATGTTAGCACAGTGGAGGAATGGAGGGTGGTAGCCAAAGATATTGTGGCACGAAAAGGAGAATTAGGTTACCGTGCTACAATTGTTGATTGGCCTGGTCTGGGTTATTCAGACAGGCCATCACTGAACTACAATGCTGATGTGATGGAGAATTTTCTGGTTCAGTTAATTAATTCACCAAATAGTCCTGTGGCAAATACAGATGGTGAAGTGGTAGTAGTTGGAGGAGGTCATGCAGCAACAATTGCAGTCCGTGCGGCTGGGAAGGGCCTTATAAGGCCATCTGGCATTGCTGCAGTTGCACCTACTTGGGCTGGACCCCTTCCCATTGTATTTGGCCGAGGTTCTGATATGGAGACAAGGTATGGGCTTCTACGAGGGACCCTCAGGGCCCCGGCTATTGGCTGGATGATGTACAATGTTCTGGTGAGCAACGAGAAGTCCATCCAGTCCCAGTACAAGTCTCACGTTTATGCCAACCCTGAGAACGTGACTCCAAATATCGTGGAAAGTCGCTACGAGTTAACCAAAAGGAATCATTCTCGTCAGGTAGATGAATGTGCAGTTACGACAACTACGGCAGGGTCAAATTCAACAACATCCTATACTCATACTGTACTAGAGCTTGTAGTAACAGAAGCAGCAGCATCAATTCCTGTCTGGGTGCCACATTTCCAAGCTTGGCAAACCAACCACAATTCCATATATACAGA]
[+] EMBL BE230552             [                                                                                                                                                                                                                                                                                                                                                                                 GTTAGCACAGTGGAGGAATGGAGGGTGGTAGCCAAAGATATTGTGGCACGAAAAGGAGAATTAGGTTACCGTGCTACAATTGTTGATTGGCCTGGTCTGGGTTATTCAGACAGGCCATCACTGAACTACAATGCTGATGTGATGGAGAATTTTCTGGTTCAGTTAATTAATTCACCAAATAGTCCTGTGGCAAATACAGATGGTGAAGTGGTAGTAGTTGGAGGAGGTCATGCAGCAACAATTGCAGTCCGTGCGGCTGGGAAGGGCCTTATAAGGCCATCTGGCATTGCTGCAGTTGCACCTACTTGGGCTGGACCCCTTCCCATTGTATTTGGCCGAGGTTCTGATATGGAGACAAGGTATGGGCTTCTACGAGGGACCCTCANGGCCCCGGCTATTGGCTGGATGATGTACAATGTTCTGGTGAGCAACGAGAAGT CATCCAGTCCCA                                                                                                                                                                                                                                                                  ]


>consensus_10896#1 AGCACACGTCGTTCGGTTCCTCTCCACTCCAACTCCACCGTTGCTCCCACCAAACCTCCC ACTCCTTCCTCACCAACCATGCGCCCCACCGCCGCGGCCGCCACCGCCGCCTTCGCCTCA CCGGTCGTCGCGGTTCCCAGTCGCGCGGCCCCGCTCGCCGCCCGCCGCCGCCTCCGCCGC GCGAGGCGCTTCGCTGTCCGCTCCGTCGCCTCCCCTCCAACGGTCCCCAAGCCCGCGGCT CCCCCCTCCAAGACTGGGAAATGGCAGTGGACATTTGAGGATAAGCCAATAAACATTTAC TATGAGGAACATGAGCATGAGACTGCTGAGAACGTGAAGAACATTCTTATGATTCCTACA ATTTCTGATGTTAGCACAGTGGAGGAATGGAGGGTGGTAGCCAAAGATATTGTGGCACGA AAAGGAGAATTAGGTTACCGTGCTACAATTGTTGATTGGCCTGGTCTGGGTTATTCAGAC AGGCCATCACTGAACTACAATGCTGATGTGATGGAGAATTTTCTGGTTCAGTTAATTAAT TCACCAAATAGTCCTGTGGCAAATACAGATGGTGAAGTGGTAGTAGTTGGAGGAGGTCAT GCAGCAACAATTGCAGTCCGTGCGGCTGGGAAGGGCCTTATAAGGCCATCTGGCATTGCT GCAGTTGCACCTACTTGGGCTGGACCCCTTCCCATTGTATTTGGCCGAGGTTCTGATATG GAGACAAGGTATGGGCTTCTACGAGGGACCCTCAGGGCCCCGGCTATTGGCTGGATGATG TACAATGTTCTGGTGAGCAACGAGAAGTCCATCCAGTCCCAGTACAAGTCTCACGTTTAT GCCAACCCTGAGAACGTGACTCCAAATATCGTGGAAAGTCGCTACGAGTTAACCAAAAGG AATCATTCTCGTCAGGTAGATGAATGTGCAGTTACGACAACTACGGCAGGGTCAAATTCA ACAACATCCTATACTCATACTGTACTAGAGCTTGTAGTAACAGAAGCAGCAGCATCAATT CCTGTCTGGGTGCCACATTTCCAAGCTTGGCAAACCAACCACAATTCCATATATACAGA



consensusID : consensus_10896#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1060
fasta sequence
                              [GATGTTAGCACAGTGGAGGAATGGAGGGTGGTAGCCAAAGATATTGTGGCACGAAAAGGAGAATTAGGTTACCGTGCTACAATTGTTGATTGGCCTGGTCTGGGTTATTCAGACAGGCCATCACTGAACTACAATGCTGATGTGATGGAGAATTTTCTGGTTCAGTTAATTAATTCACCAAATAGTCCTGTGGCAAATACAGATGGTGAAGTGGTAGTAGTTGGAGGAGGTCATGCAGCAACAATTGCAGTCCGTGCGGCTGGGAAGGGCCTTATAAGGCCATCTGGCATTGCTGCAGTTGCACCTACTTGGGCTGGACCCCTTCCCATTGTATTTGGCCGAGGTTCTGATATGGAGACAAGGTATGGGCTTCTACGAGGGACCCTCAGGGCCCCGGCTATTGGCTGGATGATGTACAATGTTCTGGTGAGCAACGAGAAGTCCATCCAGTCCCAGTACAAGTCTCACGTTTATGCCAACCCTGAGAACGTGACTCCAAATATCGTGGAAAGTCGCTACGAGTTAACCAAAAGGAAAGGTGCACGGTTTGTCCCGGCTGCATTCTTGACAGGCCTTCTTGACCC-TGTCCAAACAAGGGAAGAATTCCTTCAGCTGTTTGCC-AAGTTGGACGGTGACGCTCCAGTTC-TGGTTGCATCGACCGTGAATGCCCCGAAGAGGTCGAAGGCTGAGATGGAAGCTCTCAGAGGCGCCAAAGGCGTGACAAAATTCGTGGAGGTTCCAGGTGCCCTTCTGCCGCAGGAGGAATTCCCATCACCAGTCGCGGAGGAACTCTACAGCTTTCTGAAGGAATCATTCTCGTCAGGTAGATGAATGTGCAGNTACGACAACTACNGCAGGGTCAAATT-NACAACATCCTATACTCATACTGNACTAGAGCTTGGAGTAACAGAAGCAGCAGCATTAANTTCCTGTCTGGGTGCCACATTTNCAAGCTTGGGNAANCAACACCANTTCC-TATATACAGAGAGNGNGNGCAAAG-ATATTGGCCTGGTCAATAATTGCAGCT-AACATCATGCTNCTCAANTTNGGGGGGTTCCGG]

[+] EMBL BE230603             [GATGTTAGCACAGTGGAGGAATGGAGGGTGGTAGCCAAAGATATTGTGGCACGAAAAGGAGAATTAGGTTACCGTGCTACAATTGTTGATTGGCCTGGTCTGGGTTATTCAGACAGGCCATCACTGAACTACAATGCTGATGTGATGGAGAATTTTCTGGTTCAGTTAATTAATTCACCAAATAGTCCTGTGGCAAATACAGATGGTGAAGTGGTAGTAGTTGGAGGAGGTCATGCAGCAACAATTGCAGTCCGTGCGGCTGGGAAGGGCCTTATAAGGCCATCTGGCATTGCTGCAGTTGCACCTACTTGGGCTGGACCCCTTCCCATTGTATTTGGCCGAGGTTCTGATATGGAGACAAGGTATGGGCTTCTACGAGGGACCCTCAGGGCCCCGGCTATT GCTGGATGATGTACAATGTTCTGGTGAGCAACGAGAAGTCCATCCAGTCCCAGTACAAGTCTCACGTTTATGCCAACCCTGAGAACGTGACTCCAAATATCGTGGAAAGTCGCTACGAGTTAACCAAAAGGAAAGGTGCACGGTTTGTCCCGGCTGCATTCTTGACAGGCCTTCTTGACCCTTGTNCAAACAANGGAAGAATTCCTTCAGCTGTTTGCCAAAGTTGGACGGTGACGCTCCAGTTCTTGGTTGCATCGACCcng                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL CF295623             [                                                                                                                                                   GAGAATTTTCTGGTTCAGTTAATTAATTCACCAAATAGTCCTGTGGCAAATACAGATGGTGAAGTGGTAGTAGTTGGAGGAGGTCATGCAGCAACAATTGCAGTCCGTGCGGCTGGGAAGGGCCTTATAAGGCCATCTGGCATTGCTGCAGTTGCACCTACTTGGGCTGGACCCCTT CCATTGTATTTGGCCGAGGTTCTGATATGGAGACAAGGTATGGGCTTCTACGAGGGACCCTCAGGGCCCCGGCTATTGGCTGGATGATGTACAATGTTCTGGTGAGCAACGAGAAGTCCATCCAGTCCCAGTACAAGTCTCACGTTTATGCCAACCCTGAGAACGTGACTCCAAATATCGTGGAAAGTCGCTACGAGTTAACCAAAAGGAAAGGTGCACGGTTTGTCCCGGCTGCATTCTTGACAGGCCTTCTTGACCC TGTCCAAACAAGGGAAGAATTCCTTCANCTGTTTGCC AAGTTGGACGGTGACGCTCCAGTTC TGGTTGCATCGACC                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL CA767505             [                                                                                                                                                                                                                                   AGGTCATGCAGCAACAATTGCAGTCCGTGCGGCTGGGAAGGGCCTTATAAGGCCATCTGGCATTGCTGCAGTTGCACCTACTTGGGCTGGACCCCTTCCCATTGTATTTGGCCGAGGTTCTGATATGGAGACAAGGTATGGGCTTCTACGAGGGACCCTCAGGGCCCCGGCTATTGGCTGGATGATGTACAATGTTCTGGTGAGCAACGAGAAGTCCATCCAGTCCCAGNACNAGTCTCACGTTTATGCCAACCCTGAGAACGTGACTCCAAATATCGTGGAGAGTCGCTACGAGTTAACCAAAAGGAAAGGTGCACGGTTTGTCCCGGCTGCATTCTTGACAGGCCTTCTTGACCC TGTCCAAACAAGGGAAGAATTCCTTCAGCTGTTTGCC AAGTTGGACGGTGACG TTCAGTTC TGGTTGCATCGACAGTGAATGCCCCGAAGAGGTCGAAGGCTGAGATGGAAGCTCTCAGAGGCGCCAAAGGCGTGACAAAATTCGTGGAGGTTCCAGGTGCCCTTCTGCCGCAGGAGGAATTCCCATCACCAGTCGCGGAGGAACTCTACAGCTTTCTGAAGGAATCATTCTCGTCAGGTAGATGAATGTGCAGNTACGACAACTACNGCAGGGTCAAATT NACAACATCCTATACTCATACTGNACTAGAGCTTGGAGTAACAGAAGCAGCAGCATTAANTTCCTGTCTGGGTGCCACATTTNCAAGCTTGGGNAANCAACACCANTTCC TATATACAGAGAGNGNGNGCAAAG ATATTGGCCTGGTCAATAATTGCAGCT AACATCATGCTNCTCAANTTNGGGGGGTTCCGG]
[-] EMBL CF295624             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              TCCAAATATCGTGGAAAGTCGCTACGAGTTAACCAAAAGGAAAGGTGCACGGTTTGTCCCGGCTGCATTCTTGACAGGCCTTCTTGACCC TGTCCAAACAAGGGAAGAATTCCTTCAGCTGTTTGCC AAGTTGGACGGTGACGCTCCAGTTC TGGTTGCATCGACCGTGAATGCCCCGAAGAGGTCGAAGGCTGAGATGGAAGCTCTCAGAGGCGCCAAAGGCGTGACAAAATTCGTGGAGGTTCCAGGTGCCCTTCTGCCGCAGGAGGAATTCCCATCACCAGTCGCGGAGGAACTCTACAGCTTTCTGAAGGAATCATTCTCGTCAGGTAGATGAATGTGCAGTTACGACAACTACGGCAGGGTCAAATTCAACAACATCCTATACTCATACTGTACTAGAGCTTGTAGTAACAGAAGCAGCAGCATCAA TTCCTGTCTGGGTGCCACATTTCCAAGCTTGGCAAACCAACCACAATTCCATATATACAGAGAGTGTGTGCAAAGCATATTGCCCTGATCAATAATTGCAGCTCACCATCATGCTCCTCAAaaaaa           ]


>consensus_10896#2 GATGTTAGCACAGTGGAGGAATGGAGGGTGGTAGCCAAAGATATTGTGGCACGAAAAGGA GAATTAGGTTACCGTGCTACAATTGTTGATTGGCCTGGTCTGGGTTATTCAGACAGGCCA TCACTGAACTACAATGCTGATGTGATGGAGAATTTTCTGGTTCAGTTAATTAATTCACCA AATAGTCCTGTGGCAAATACAGATGGTGAAGTGGTAGTAGTTGGAGGAGGTCATGCAGCA ACAATTGCAGTCCGTGCGGCTGGGAAGGGCCTTATAAGGCCATCTGGCATTGCTGCAGTT GCACCTACTTGGGCTGGACCCCTTCCCATTGTATTTGGCCGAGGTTCTGATATGGAGACA AGGTATGGGCTTCTACGAGGGACCCTCAGGGCCCCGGCTATTGGCTGGATGATGTACAAT GTTCTGGTGAGCAACGAGAAGTCCATCCAGTCCCAGTACAAGTCTCACGTTTATGCCAAC CCTGAGAACGTGACTCCAAATATCGTGGAAAGTCGCTACGAGTTAACCAAAAGGAAAGGT GCACGGTTTGTCCCGGCTGCATTCTTGACAGGCCTTCTTGACCCTGTCCAAACAAGGGAA GAATTCCTTCAGCTGTTTGCCAAGTTGGACGGTGACGCTCCAGTTCTGGTTGCATCGACC GTGAATGCCCCGAAGAGGTCGAAGGCTGAGATGGAAGCTCTCAGAGGCGCCAAAGGCGTG ACAAAATTCGTGGAGGTTCCAGGTGCCCTTCTGCCGCAGGAGGAATTCCCATCACCAGTC GCGGAGGAACTCTACAGCTTTCTGAAGGAATCATTCTCGTCAGGTAGATGAATGTGCAGN TACGACAACTACNGCAGGGTCAAATTNACAACATCCTATACTCATACTGNACTAGAGCTT GGAGTAACAGAAGCAGCAGCATTAANTTCCTGTCTGGGTGCCACATTTNCAAGCTTGGGN AANCAACACCANTTCCTATATACAGAGAGNGNGNGCAAAGATATTGGCCTGGTCAATAAT TGCAGCTAACATCATGCTNCTCAANTTNGGGGGGTTCCGG



consensusID : consensus_10896#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 451
fasta sequence
                              [ACGAGCTCGTCCGAATTCGGCACGAGCCAAAGGCGTKGAACAAAATTCGTGGAGGTTCCAGGTGCCCTTCTGCCGCAGGAGGAATTCCCATCACCAGTCGCGGAGGAACTCTACAGCTTTCTGAAGGAATCATTCTCGTCAGGTAGATGAATGTGCAGTTACGACAACTACGGCAGGGTCAAATTCAACAACATCCTATACTCATACTGTACTAGAGCTTGTAGTAACAGAAGCAGCAGCATCATTCCTGTCTGGGTGCCACATTTCCAAGCTTGGCAAACCAACCACAATTCCATATATACAGAGAGTGTGTGCAAAGCATATTGCCCTGATCAATAATTGCAGCTCACCATCATGCTCCTCAGCTTATGGTGGTTCCGCGGTTGCCCGAATCTCTGTTCTATTCCCTGACCCCTCTCATCCATGGAAGGAAGTACAGCCCACACATCCA]

[+] EMBL AA754364             [ACGAGCTCGTCCGAATTCGGCACGAGCCAAAGGCGTKGAACAAAATTCGTGGAGGTTCCAGGTGCCCTTCTGCCGCAGGAGGAATTCCCATCACCAGTCGCGGAGGAACTCTACAGCTTTCTGAAGGAATCATTCTCGTCAGGTAGATGAATGTGCAGTTACGACAACTACGGCAGGGTCAAATTCAACAACATCCTATACTCATACTGTACTAGAGCTTGTAGTAACAGAAGCAGCAGCATCATTCCTGTCTGGGTGCCACATTTCCAAGCTTGGCAAACCAACCACAATTCCATATATACAGAGAGTGTGTGCAAAGCATATTGCCCTGATCAATAATTGCAGCTCACCATCATGCTCCTCAGCTTATGGTGGTTCCGCGGTTGCCCGAATCTCTGTTCTATTCCCTGACCCCTCTCATCCATGGAAGGAAGTACAGCCCACACATCCA]


>consensus_10896#3 ACGAGCTCGTCCGAATTCGGCACGAGCCAAAGGCGTKGAACAAAATTCGTGGAGGTTCCA GGTGCCCTTCTGCCGCAGGAGGAATTCCCATCACCAGTCGCGGAGGAACTCTACAGCTTT CTGAAGGAATCATTCTCGTCAGGTAGATGAATGTGCAGTTACGACAACTACGGCAGGGTC AAATTCAACAACATCCTATACTCATACTGTACTAGAGCTTGTAGTAACAGAAGCAGCAGC ATCATTCCTGTCTGGGTGCCACATTTCCAAGCTTGGCAAACCAACCACAATTCCATATAT ACAGAGAGTGTGTGCAAAGCATATTGCCCTGATCAATAATTGCAGCTCACCATCATGCTC CTCAGCTTATGGTGGTTCCGCGGTTGCCCGAATCTCTGTTCTATTCCCTGACCCCTCTCA TCCATGGAAGGAAGTACAGCCCACACATCCA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10896#2      ------------------------------------------------------------
consensus_10896#3      ------------------------------------------------------------
consensus_10896#0      ------------------------------------------------------------
consensus_10896#1      AGCACACGTCGTTCGGTTCCTCTCCACTCCAACTCCACCGTTGCTCCCACCAAACCTCCC 60
                                                                                   

consensus_10896#2      ------------------------------------------------------------
consensus_10896#3      ------------------------------------------------------------
consensus_10896#0      --------CTCACCAACCATGCGCCCCACCGCCGCGGCCGCCACCGCCGCCTTCGCCTCA 52
consensus_10896#1      ACTCCTTCCTCACCAACCATGCGCCCCACCGCCGCGGCCGCCACCGCCGCCTTCGCCTCA 120
                                                                                   

consensus_10896#2      ------------------------------------------------------------
consensus_10896#3      ------------------------------------------------------------
consensus_10896#0      CCGGTCGTCGCGGTTCCCAGTCGCGCGGCCCCGCTCGCCGCCCGCCGCCGCCTCCGCCGC 112
consensus_10896#1      CCGGTCGTCGCGGTTCCCAGTCGCGCGGCCCCGCTCGCCGCCCGCCGCCGCCTCCGCCGC 180
                                                                                   

consensus_10896#2      ------------------------------------------------------------
consensus_10896#3      ------------------------------------------------------------
consensus_10896#0      GCGAGGCGCTTCGCTGTCCGCTCCGTCGCCTCCCCTCCAACGGTCCCCAAGCCCGCGGCT 172
consensus_10896#1      GCGAGGCGCTTCGCTGTCCGCTCCGTCGCCTCCCCTCCAACGGTCCCCAAGCCCGCGGCT 240
                                                                                   

consensus_10896#2      ------------------------------------------------------------
consensus_10896#3      ------------------------------------------------------------
consensus_10896#0      CCCCCCTCCAAGACTGGGAAATGGCAGTGGACATTTGAGGATAAGCCAATAAACATTTAC 232
consensus_10896#1      CCCCCCTCCAAGACTGGGAAATGGCAGTGGACATTTGAGGATAAGCCAATAAACATTTAC 300
                                                                                   

consensus_10896#2      ------------------------------------------------------------
consensus_10896#3      ------------------------------------------------------------
consensus_10896#0      TATGAGGAACATGAGCATGAGACTGCTGAGAACGTGAAGAACATTCTTATGATTCCTACA 292
consensus_10896#1      TATGAGGAACATGAGCATGAGACTGCTGAGAACGTGAAGAACATTCTTATGATTCCTACA 360
                                                                                   

consensus_10896#2      ------GATGTTAGCACAGTGGAGGAATGGAGGGTGGTAGCCAAAGATATTGTGGCACGA 54
consensus_10896#3      ------------------------------------------------------------
consensus_10896#0      ATTTCTGATGTTAGCACAGTGGAGGAATGGAGGGTGGTAGCCAAAGATATTGTGGCACGA 352
consensus_10896#1      ATTTCTGATGTTAGCACAGTGGAGGAATGGAGGGTGGTAGCCAAAGATATTGTGGCACGA 420
                                                                                   

consensus_10896#2      AAAGGAGAATTAGGTTACCGTGCTACAATTGTTGATTGGCCTGGTCTGGGTTATTCAGAC 114
consensus_10896#3      ------------------------------------------------------------
consensus_10896#0      AAAGGAGAATTAGGTTACCGTGCTACAATTGTTGATTGGCCTGGTCTGGGTTATTCAGAC 412
consensus_10896#1      AAAGGAGAATTAGGTTACCGTGCTACAATTGTTGATTGGCCTGGTCTGGGTTATTCAGAC 480
                                                                                   

consensus_10896#2      AGGCCATCACTGAACTACAATGCTGATGTGATGGAGAATTTTCTGGTTCAGTTAATTAAT 174
consensus_10896#3      ------------------------------------------------------------
consensus_10896#0      AGGCCATCACTGAACTACAATGCTGATGTGATGGAGAATTTTCTGGTTCAGTTAATTAAT 472
consensus_10896#1      AGGCCATCACTGAACTACAATGCTGATGTGATGGAGAATTTTCTGGTTCAGTTAATTAAT 540
                                                                                   

consensus_10896#2      TCACCAAATAGTCCTGTGGCAAATACAGATGGTGAAGTGGTAGTAGTTGGAGGAGGTCAT 234
consensus_10896#3      ------------------------------------------------------------
consensus_10896#0      TCACCAAATAGTCCTGTGGCAAATACAGATGGTGAAGTGGTAGTAGTTGGAGGAGGTCAT 532
consensus_10896#1      TCACCAAATAGTCCTGTGGCAAATACAGATGGTGAAGTGGTAGTAGTTGGAGGAGGTCAT 600
                                                                                   

consensus_10896#2      GCAGCAACAATTGCAGTCCGTGCGGCTGGGAAGGGCCTTATAAGGCCATCTGGCATTGCT 294
consensus_10896#3      ------------------------------------------------------------
consensus_10896#0      GCAGCAACAATTGCAGTCCGTGCGGCTGGGAAGGGCCTTATAAGGCCATCTGGCATTGCT 592
consensus_10896#1      GCAGCAACAATTGCAGTCCGTGCGGCTGGGAAGGGCCTTATAAGGCCATCTGGCATTGCT 660
                                                                                   

consensus_10896#2      GCAGTTGCACCTACTTGGGCTGGACCCCTTCCCATTGTATTTGGCCGAGGTTCTGATATG 354
consensus_10896#3      ------------------------------------------------------------
consensus_10896#0      GCAGTTGCACCTACTTGGGCTGGACCCCTTCCCATTGTATTTGGCCGAGGTTCTGATATG 652
consensus_10896#1      GCAGTTGCACCTACTTGGGCTGGACCCCTTCCCATTGTATTTGGCCGAGGTTCTGATATG 720
                                                                                   

consensus_10896#2      GAGACAAGGTATGGGCTTCTACGAGGGACCCTCAGGGCCCCGGCTATTGGCTGGATGATG 414
consensus_10896#3      ------------------------------------------------------------
consensus_10896#0      GAGACAAGGTATGGGCTTCTACGAGGGACCCTCAGGGCCCCGGCTATTGGCTGGATGATG 712
consensus_10896#1      GAGACAAGGTATGGGCTTCTACGAGGGACCCTCAGGGCCCCGGCTATTGGCTGGATGATG 780
                                                                                   

consensus_10896#2      TACAATGTTCTGGTGAGCAACGAGAAGTCCATCCAGTCCCAGTACAAGTCTCACGTTTAT 474
consensus_10896#3      ------------------------------------------------------------
consensus_10896#0      TACAATGTTCTGGTGAGCAACGAGAAGTCCATCCAGTCCCAGTACAAGTCTCACGTTTAT 772
consensus_10896#1      TACAATGTTCTGGTGAGCAACGAGAAGTCCATCCAGTCCCAGTACAAGTCTCACGTTTAT 840
                                                                                   

consensus_10896#2      GCCAACCCTGAGAACGTGACTCCAAATATCGTGGAAAGTCGCTACGAGTTAACCAAAAGG 534
consensus_10896#3      ------------------------------------------------------------
consensus_10896#0      GCCAACCCTGAGAACGTGACTCCAAATATCGTGGAAAGTCGCTACGAGTTAACCAAAAGG 832
consensus_10896#1      GCCAACCCTGAGAACGTGACTCCAAATATCGTGGAAAGTCGCTACGAGTTAACCAAAAGG 900
                                                                                   

consensus_10896#2      AAAGGTGCACGGTTTGTCCCGGCTGCATTCTTGACAGGCCTTCTTGACCCTGTCCAAACA 594
consensus_10896#3      ------------------------------------------------------------
consensus_10896#0      AAAGGTGCACGGTTTGTCCCGGCTGCATTCTTGACAGGCCTTGAATGCCCCTGTCCAAAC 892
consensus_10896#1      AA---------------------------------------------------------- 902
                                                                                   

consensus_10896#2      AGGGAAGAATTCCTTCAGCTGTTTGCCAAGTTGGACGGTGACGCTCCAGTTCTGGTTGCA 654
consensus_10896#3      ------------------------------------------------------------
consensus_10896#0      AAGGGAAGAATTCCTTCAGCTGTTTGCCAAGTTGGAAGCTCTCAGAGGCGCCAAAGGCGT 952
consensus_10896#1      ------------------------------------------------------------
                                                                                   

consensus_10896#2      TCGACCGTGAATGCCCCGAAGAGGTCGAAGGCTGAGATGGAAGCTCTCAGAGGCGCCAAA 714
consensus_10896#3      --------------------------ACGAGCTCGTCCGAA---TTCGGCACGAGCCAAA 31
consensus_10896#0      GACAAAATTCGTGGAGGTTCCAGGTGCCCTTCTGCCGCAGG------------------- 993
consensus_10896#1      ------------------------------------------------------------
                                                                                   

consensus_10896#2      GGCGTG--ACAAAATTCGTGGAGGTTCCAGGTGCCCTTCTGCCGCAGGAGGAATTCCCAT 772
consensus_10896#3      GGCGTKGAACAAAATTCGTGGAGGTTCCAGGTGCCCTTCTGCCGCAGGAGGAATTCCCAT 91
consensus_10896#0      ------------------------------------------------AGGAATTCCCAT 1005
consensus_10896#1      ------------------------------------------------------------
                                                                                   

consensus_10896#2      CACCAGTCGCGGAGGAACTCTACAGCTTTCTGAAGGAATCATTCTCGTCAGGTAGATGAA 832
consensus_10896#3      CACCAGTCGCGGAGGAACTCTACAGCTTTCTGAAGGAATCATTCTCGTCAGGTAGATGAA 151
consensus_10896#0      CACCAGTCGCGGAGGAACTCTACAGCTTTCTGAAGGAATCATTCTCGTCAGGTAGATGAA 1065
consensus_10896#1      --------------------------------------TCATTCTCGTCAGGTAGATGAA 924
                                                             **********************

consensus_10896#2      TGTGCAGNTACGACAACTACNGCAGGGTCAAATTNA-CAACATCCTATACTCATACTGNA 891
consensus_10896#3      TGTGCAGTTACGACAACTACGGCAGGGTCAAATTCAACAACATCCTATACTCATACTGTA 211
consensus_10896#0      TGTGCAGTTACGACAACTACGGCAGGGTCAAATTCAACAACATCCTATACTCATACTGTA 1125
consensus_10896#1      TGTGCAGTTACGACAACTACGGCAGGGTCAAATTCAACAACATCCTATACTCATACTGTA 984
                       ******* ************ ************* * ********************* *

consensus_10896#2      CTAGAGCTTGGAGTAACAGAAGCAGCAGCATTAANTTCCTGTCTGGGTGCCACATTTNCA 951
consensus_10896#3      CTAGAGCTTGTAGTAACAGAAGCAGCAGCATCA--TTCCTGTCTGGGTGCCACATTTCCA 269
consensus_10896#0      CTAGAGCTTGTAGTAACAGAAGCAGCAGCATCAA-TTCCTGTCTGGGTGCCACATTTCCA 1184
consensus_10896#1      CTAGAGCTTGTAGTAACAGAAGCAGCAGCATCAA-TTCCTGTCTGGGTGCCACATTTCCA 1043
                       ********** ******************** *  ********************** **

consensus_10896#2      AGCTTGGGNAANCAACACCANTTCC-TATATACAGAGAGNGNGNGCAAAG-ATATTGGCC 1009
consensus_10896#3      AGCTTGGCAAACCAACCACAATTCCATATATACAGAGAGTGTGTGCAAAGCATATTGCCC 329
consensus_10896#0      AGCTTGGCAAACCAACCACAATTCCATATATACAGA------------------------ 1220
consensus_10896#1      AGCTTGGCAAACCAACCACAATTCCATATATACAGA------------------------ 1079
                       *******  ** ****  ** **** **********                        

consensus_10896#2      TGGTCAATAATTGCAGCT-AACATCATGCTNCTCAANTTNGGGGGGTTCCGG-------- 1060
consensus_10896#3      TGATCAATAATTGCAGCTCACCATCATGCTCCTCAGCTTATGGTGGTTCCGCGGTTGCCC 389
consensus_10896#0      ------------------------------------------------------------
consensus_10896#1      ------------------------------------------------------------
                                                                                   

consensus_10896#2      ------------------------------------------------------------
consensus_10896#3      GAATCTCTGTTCTATTCCCTGACCCCTCTCATCCATGGAAGGAAGTACAGCCCACACATC 449
consensus_10896#0      ------------------------------------------------------------
consensus_10896#1      ------------------------------------------------------------
                                                                                   

consensus_10896#2      --
consensus_10896#3      CA 451
consensus_10896#0      --
consensus_10896#1      --
                         




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)