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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10907#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 779 fasta sequence
[TTTTTTAAAAGGGGAATAAATTTTCCTCATTTCCTGTGTTATCTTGTGCATCTTGCACATATTTGATGTGAGGCCAACACACGAAGTGATATACACGAATACAACCTTTTCCGGTTCCC--TT------GTTACAAGGGCAGAAATGATGAGAATTAGCGT-AAAAGGATAAACCGATCGCCAGAGAAGGCAACGTAAGTGGAGAGCGAATCAAGTACCTAAATCGCTAAACCCCATCCACACTCTATTCTGTACAATGGTTTGGAAAGGG-ACGTTGCTCTATCGCCGTACAGAG-AAGCTATGCTGCTATACATGG-AACCGAGCGCTCAAAAACAACATACTGTATGCTTCATCATAAGCAAACTAGTTCTCAGCTCTGCATTAATTGCCTTTCACGGTAGATTTCCCCAAGCTGCTGATATAAGAATTTCT-GCTCCTCAAAGGTTAGATTTCTTAGAATCTGTTCCAAGATTAGCTCAACAGAG-TAGTTTTGGGGCGATATGAATGATTGGTGATATATGTATGCAAAAACTGCCATAACCATCTGACAATCCATTCGGTCAGTAATCCCACCATGCCCAGGTATGCTGTCTCCAAAATCCTTTATTTTAAAGGCCCTCTTGAAGCCACTTGCAAAGAAACCTCCAAAAGGTGCTATTATTGATGCAAACAAACCTAGTGCTAAAGCATGCCACTGCACAGGCAAAAGAACAACTTCCTTCCAAGGGAACCCCTTTGGCACCCATTCTCCCAAAGAATAATGTTCTGGCTTAAACATAGGACCAGGG]
[-] EMBL BM038067 [TTTTTTAAAAGGGGAATAAATTTTCCTCATTTCCTGTGTTATCTTGTGCATCTTGCACATATTTGATGTGAGGCCAACACACGAAGTGATATACACGAATACAACCTTTTCCGGTTCCCTGTTACA GTTACAAGGGCAGAAATGATGAGAATTAGCGT AAAAGGATAAACCGATCGCCAGAGAAGGCAACGTAAGTGGAGAGCGAATCAAGTACCTAAATCGCTAAACCCCATCCACACTCTATTCTGTACAAGGGTTTGGAAAGGG ACGTTGCTCTATCGCCGTACAGAG AAGCTATGCTGCTATACATGG AACCGAGCGCTCAAAAACAACATACTGNATGCTTCATCATAAGCAAACTAGTTCTCAGCTCTGCATTAATTGCCTTTCACGGTAGATTTCCCCAAGCTGGTGATATAAGAATTTCTGGGTCCTCAAAGGTTAGATTTCTTAGAATCTGTTCCAAGATTAGCTCAACAGAGATAGATTTGGGGGGATATGAATGAATGGgg ]
[-] EMBL BM420730 [TTTTTTAACAGGGGAATAAATTTTCCTCATTTCCTGTGTTATCTTGTGCATCTTGCACATATTTGATGTGAGG CAACACACGAAGTGATATACACGAATACAACCTTTTCCGGTTCCC TTGTTACAGTTACAAGGGCAGAAATGATGAGAATTAGCGTAAAAAGGATAAACCGATCGCCAGAGAAGGCAACGTAAGTGGAGAGCGAATCAAGTACCTAAATCGCTAAACCCCATCCACACTCTATTCTGTACAA GGGTTGGAANGGGCACGTTGCTCTATCGCCGTACAGAGCAAGCTATGCTGCTATACATGGCAACCGAGC ]
[+] EMBL CB675473 [ AAGGGGAATAAATTTTCCTCATTTCCTGTGTTATCTTGTGCATCTTGCACATATTTGATGTGAGGCCAACACACGAAGTGATATACACGAATACAACCTTTTCCGGTTCCC TT GTTACAAGGGCAGAAATGATGAGAATTAGCGT AAAAGGATAAACCGATCGCCAGAGAAGGCAACGTAAGTGGAGAGCGAATCAAGTACCTAAATCGCTAAACCCCATCCACACTCTATTCTGTACAATGGTTTGGAAAGGG ACGTTGCTCTATCGCCGTACAGAG AAGCTATGCTGCTATACATGG AACCGAGCGCTCAAAAACAACATACTGTATGCTTCATCATAAGCAAACTAGTTCTCAGCTCTGCATTAATTGCCTTTCACGGTAGATTTCCCCAAGCTGCTGATATAAGAATTTCT GCTCCTCAAAGGTTAGATTTCTTAGAATCTGTTCCAAGATTAGCTCAACAGAG TAGTTTTGGGGCGATATGAATGATTGGTGATATATGTATGCAAAAACTGCCATAACCATCTGACAATCCATTCGGTCAGTAATCCCACCATGCCCAGGTATGCTGTCTCCAAAATCCTTTATTTTAAAGGCCCTCTTGAAGCCACTTGCAAAGAAACCTCCAAAAGGTGCTATTATTGATGCAAACAAACCTAGTGCTAAAGCATGCCACTGCACAGGCAAAAGAACAACTTCCTTCCAAGGGAACCCCTTTGGCACCCATTCTCCCAAAGAATAATGTTCTGGCTTAAACATAGGACCAGG ]
[+] EMBL CB667579 [ ATAAATTTTCCTCATTTCCTGTGTTATCTTGTGCATCTTGCACATATTTGATGTGAGGCCAACACACGAAGTGATATACACGAATACAACCTTTTCCGGTTCCC TT GTTACAAGGGCAGAAATGATGAGAATTAGCGT AAAAGGATAAACCGATCGCCAGAGAAGGCAACGTAAGTGGAGAGCGAATCAAGTACCTAAATCGCTAAACCCCATCCACACTCTATTCTGTACAATGGTTTGGAAAGGG ACGTTGCTCTATCGCCGTACAGAG AAGCTATGCTGCTATACATGG AACCGAGCGCTCAAAAACAACATACTGTATGCTTCATCATAAGCAAACTAGTTCTCAGCTCTGCATTAATTGCCTTTCACGGTAGATTTCCCCAAGCTGCTGATATAAGAATTTCT GCTCCTCAAAGGTTAGATTTCTTAGAATCTGTTCCAAGATTAGCTCAACAGAG TAGTTTTGGGGCGATATGAATGATTGGTGATATATGTATGCAAAAACTGCCATAACCATCTGACAATCCATTCGGTCAGTAATCCCACCATGCCCAGGTATGCTGTCTCCAAAATCCTTTATTTTAAAGGCCCTCTTGAAGCCACTTGCAAAGAAACCTCCAAAAGGTGCTATTATTGATGCAAACAAACCTAGTGCTAAAGCATGCCACTGCACAGGCAAAAGAACAACTTCCTTCCAAGGGAACCCCTTTGGCACCCATTCTCCCAAAGAATAATGTTCTGGCTTAAACATAGGACCAGG ]
[+] EMBL CB669662 [ AAATTTTCCTCCTTTAAAGGGGTATCTTGTGCATCTTGCAGATATTTGATGTGAGGCCGACACACCAAGTGATATACACGAATACCACCTTTTCCGGCTCCC TT GTTACAAGGGCAGAAATGATGAGAATTATCGT AAAAGGATAAACCGATCGCCAGAAAAGGCAACGTAAGTGGAGAGCGAATCAAGTACCTAAATCGCTAAACCCCATCCACACTCTATTCTGTACAATGGTTTGGAAAGGG ACGTTGCTCTATCGCCGTACAAAA AAGCTATGCTGCTATACATGG AACCAAGCGCTCAAAAACAACATACTGTATGCTTCATCATAAGCAAACTAGTTCTCAGCTCTGCATTAATTGCCTTTCACGGCAGATTTCCCCCAGCTGCTGATATAAAAATTTCT GCTCCTCCAAGGTTAGATTTCTTAGAATCTGTTCCAAGATTAACTCAACAAAG TAGTTTTGGGGCGATATGAATGATTGGTGATATATGTATGCAAAAACTGCCATAACCATCTGACAATCCATTCGGTCAGTAATCCCACCATGCCCAGGAATGCTGTCTCCAAAATCATTTATTTTAAAGGCCCTCTTGAAGCCACTTGCAAAGAAACCTCCAAAAGGAGCTATTATTGATGCAAACAAACCTAct ]
[+] EMBL CB678250 [ GAGGCCAACACACGAAGTGATATACACGAATACCACCTTTTCCGGTTCCC TT GTTACAAGGGCAGAAATGATGAGAATTAGCGT AAAAGGATAAACCGATCGCCAGAGAAGGCAACGTAAGTGGAGAGCGAATCAAGTACCTAAATCGCTAAACCCCATCCACACTCTATTCTGTACAATGGTTTGGAAAGGG ACGTTGCTCTATCGCCGTACAGAG AAGCTATGCTGCTATACATGG AACCGAGCGCTCAAAAACAACATACTGTATGCTTCATCATAAGCAAACTAGTTCTCAGCTCTGCATTAATTGCCTTTCACGGTAGATTTCCCCAAGCTGCTGATATAAGAATTTCT GCTCCTCAAAGGTTAGATTTCTTAGAATCTGTTCCAAGATTAGCTCAACAGAG TAGTTTTGGGGCGATATGAATGATTGGTGATATATGTATGCAAAAACTGCCATAACCATCTGACAATCCATTCGGTCAGTAATCCCACCATGCCCAGGTATGCTGTCTCCAAAATCCTTTATTTTAAAGGCCCTCTTGAAGCCACTTGCAAAGAAACCTCCAAAAGGTGCTATTATTGATGCAAACAAACCTAGTGCTAAAGCATGCCACTGCACAGGCAAAAGAACAACTTCCTTCCAAGGGAACCCCTTTGGCACCCATTCTCCCAAAGAATAATGTTCTGGCTTAAACATAGGACCAGG ]
[-] EMBL CA753122 [ gGCTG GATACA GG AACCGAACGCTCAAAAACCACATACTGAATGCTTCATCATAAGCAAACTAGTTTTCAGCTCTGCATTAATTGCCTTTCACGGTAGATTTCCCCAAGCTGCTGATATAAGAATTTCT GCTCCTCAAAGGTTAGATTTCTTAGAATCTGTTCCAAGATTAGCTCNACAGAG TAGTTTTGGAGCGATATGAATGATTGGTGATATATGTATGCAAAAACTGCCATAACCATCTGACAATCCATTCGGTCAGTAATCCCACCATGCCCAGGTATGCTGTCTCCAAAATCCTTTATTTTAAAGGCCCTCTTGAAGCCACTTGCAAAGAAACCTCCAAAAGGTGCTATTATTGATGCAAACAAACCTAGTGCTAAAGCATGCCACTGCACAGGCAAAAGAACAACTTCCTTCCAAGGGAACCCCTTTGGCACCCATTCTCCCAAAGAATAATGTTCTGGCTTAAACATAGGACCAGGG]
consensusID : consensus_10907#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 422 fasta sequence
[TTTTTTAAAAGGGGAATAAATTTTCCTCATTTGCCTGTGTTATCTTGTGCATCTTGCACATATTTGATTGTGAGGCAACACACGAAGTGATATACACGAATACAACCTTTTCCGGTTCCCTTGTTACAGTTACAAGTGGCAGAAATGCATGAGAATTCAGCTGTAAAAGTGATAAACCGATCGCCAGAGAAGGCCAACCGTAAGTGGCAGAGCGAATCAAGTCACCTAAATCGCTAAAACCCCAATCCACACTCTATTCTTGTACAAGTGGTTTGGCCAAGGGACGTTGCTCTATCGCCGTACCAGAGAAGCTATGCTGCTATACATTGGAACCGAAGCGCTCAAAAACAACATACTGTATGCTTCACTCATAAAGCAAAACTAGTTCTCAGCGTCTGCATTAATTGCCTTTCACGGTAGAT]
[-] EMBL BM420345 [TTTTTTAAAAGGGGAATAAATTTTCCTCATTTGCCTGTGTTATCTTGTGCATCTTGCACATATTTGATTGTGAGGCAACACACGAAGTGATATACACGAATACAACCTTTTCCGGTTCCCTTGTTACAGTTACAAGTGGCAGAAATGCATGAGAATTCAGCTGTAAAAGTGATAAACCGATCGCCAGAGAAGGCCAACCGTAAGTGGCAGAGCGAATCAAGTCACCTAAATCGCTAAAACCCCAATCCACACTCTATTCTTGTACAAGTGGTTTGGCCAAGGGACGTTGCTCTATCGCCGTACCAGAGAAGCTATGCTGCTATACATTGGAACCGAAGCGCTCAAAAACAACATACTGTATGCTTCACTCATAAAGCAAAACTAGTTCTCAGCGTCTGCATTAATTGCCTTTCACGGTAGAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10907#0 TTTTTTAAAAGGGGAATAAATTTTCCTCATTT-CCTGTGTTATCTTGTGCATCTTGCACA 59
consensus_10907#1 TTTTTTAAAAGGGGAATAAATTTTCCTCATTTGCCTGTGTTATCTTGTGCATCTTGCACA 60
******************************** ***************************
consensus_10907#0 TATTTGAT-GTGAGGCCAACACACGAAGTGATATACACGAATACAACCTTTTCCGGTTCC 118
consensus_10907#1 TATTTGATTGTGAGGC-AACACACGAAGTGATATACACGAATACAACCTTTTCCGGTTCC 119
******** ******* *******************************************
consensus_10907#0 CTTGTTACAAG-------GGCAGAAATG-ATGAGAATT-AGC-GTAAAAG-GATAAACCG 167
consensus_10907#1 CTTGTTACAGTTACAAGTGGCAGAAATGCATGAGAATTCAGCTGTAAAAGTGATAAACCG 179
********* ********** ********* *** ******* *********
consensus_10907#0 ATCGCCAGAGAAGGCAA--CGTAAGTGG-AGAGCGAATCAAGT-ACCTAAATCGCTAAAC 223
consensus_10907#1 ATCGCCAGAGAAGGCCAACCGTAAGTGGCAGAGCGAATCAAGTCACCTAAATCGCTAAAA 239
*************** * ********* ************** ***************
consensus_10907#0 CCC--ATCCACACTCTATTCT-GTACAA-TGGTTTGGA-AAGGGACGTTGCTCTATCGCC 278
consensus_10907#1 CCCCAATCCACACTCTATTCTTGTACAAGTGGTTTGGCCAAGGGACGTTGCTCTATCGCC 299
*** **************** ****** ******** *********************
consensus_10907#0 GTAC-AGAGAAGCTATGCTGCTATACAT-GGAACCGA-GCGCTCAAAAACAACATACTGT 335
consensus_10907#1 GTACCAGAGAAGCTATGCTGCTATACATTGGAACCGAAGCGCTCAAAAACAACATACTGT 359
**** *********************** ******** **********************
consensus_10907#0 ATGCTTCA-TCATAAGC--AAACTAGTTCTCAGC-TCTGCATTAATTGCCTTTCACGGTA 391
consensus_10907#1 ATGCTTCACTCATAAAGCAAAACTAGTTCTCAGCGTCTGCATTAATTGCCTTTCACGGTA 419
******** ****** *************** *************************
consensus_10907#0 GATTTCCCCAAGCTGCTGATATAAGAATTTCTGCTCCTCAAAGGTTAGATTTCTTAGAAT 451
consensus_10907#1 GAT--------------------------------------------------------- 422
***
consensus_10907#0 CTGTTCCAAGATTAGCTCAACAGAGTAGTTTTGGGGCGATATGAATGATTGGTGATATAT 511
consensus_10907#1 ------------------------------------------------------------
consensus_10907#0 GTATGCAAAAACTGCCATAACCATCTGACAATCCATTCGGTCAGTAATCCCACCATGCCC 571
consensus_10907#1 ------------------------------------------------------------
consensus_10907#0 AGGTATGCTGTCTCCAAAATCCTTTATTTTAAAGGCCCTCTTGAAGCCACTTGCAAAGAA 631
consensus_10907#1 ------------------------------------------------------------
consensus_10907#0 ACCTCCAAAAGGTGCTATTATTGATGCAAACAAACCTAGTGCTAAAGCATGCCACTGCAC 691
consensus_10907#1 ------------------------------------------------------------
consensus_10907#0 AGGCAAAAGAACAACTTCCTTCCAAGGGAACCCCTTTGGCACCCATTCTCCCAAAGAATA 751
consensus_10907#1 ------------------------------------------------------------
consensus_10907#0 ATGTTCTGGCTTAAACATAGGACCAGGG 779
consensus_10907#1 ----------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||