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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10911#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1000 fasta sequence
[TCCCCCTCTCCCTCTCCCTTGCTCTCTCTTCTTTAACCTGTTTATATTTATCTCCCCCTCTCCGTCTCGCCGTCTCTCAGCTCTCTCTGCTACTCCTCCTAGCTGCATGCTAAGCTAAATCTTCTGTTGGATTGCCTAGCTTTGCTGCTTTGCTTGCTTGCTGTGGTGTGGTGTGGTGTGAATTTTGTTGATTGGTCGGAGCTTGGGGTTGTGTATGGTGGTGGTGGTGTGGTAGCTAGTAGCTGCTAGTGCTAGATGGTCGCAGGGGCGTTGGGGTACATGGCGAGAGCGGCGGACGGCGGCAGGGCGGCGGA-CTCGTCACCAGGGATTTCCTCGGCGGCTGCGTCG-CGCCGACGACGCCAGGGACGCCGCCGCCGCCGCAGCAGCAACTGCCAGGCACGACTCCGTGTCCGGCAAGCTGTCCCTGCAGAAGCAGACGTGCCCGGCGACGCCGACAGACCTCAACCTCTTCCCCGTCCCCGGCGCCGCCGCGTCCGCCGCCAAGCCGTGCCCGTCGTCTACGGCGGCGGCGGCCTCCGGCGCAGGCGGCACCACGACGACGACGACGACGTACCACAGCGTGTGCACGATCGAGAAGGTGAAGACGGCGCTGGAGCGGTTCGAGCGCGGCAAGCACCAGCACCACCAGCACCAGCAGCACAGCGCCGGCGCGTCCCCGTCGTCGTCGTCCGTCACCACCTCCTCCGTGAAGCGCCGGCGCCGAAGAAGAAGCCCCGGATCGACCTCAACGTGGGGTTCCTCGGCACCTAGCTTTCCTACCCTACCTTCACCTGCATCGCCACGGTGGACACATGTGACTAGCCATAGCTAGCTAGCCAGCCATGCCCCCAATTCTGTTAGGAAATCAATGAATCAATCAATCAAACACGTACTCCATAGAACACGAGGATGATCATGACGATGATGATGATGATACTAGTAGTCCTAGCTCCACTATGTAATTGATCAAAAAGCATTTTCGCCCTTAAATCAACTTTTC]
[+] EMBL AK109543 [TCCCCCTCTCCCTCTCCCTTGCTCTCTCTTCTTTAACCTGTTTATATTTATCTCCCCCTCTCCGTCTCGCCGTCTCTCAGCTCTCTCTGCTACTCCTCCTAGCTGCATGCTAAGCTAAATCTTCTGTTGGATTGCCTAGCTTTGCTGCTTTGCTTGCTTGCTGTGGTGTGGTGTGGTGTGAATTTTGTTGATTGGTCGGAGCTTGGGGTTGTGTATGGTGGTGGTGGTGTGGTAGCTAGTAGCTGCTAGTGCTAGATGGTCGCAGGGGCGTTGGGGTACATGGCGAGAGCGGCGGACGGCGGCAGGGCGGCGGAGCTCGTCACCAGGGATTTCCTCGGCGGCTGCGTCGCCGCCGACGACGCCAGGGACGCCGCCGCCGCCGCAGCAGCAACTGCCAGGCACGACTCCGTGTCCGGCAAGCTGTCCCTGCAGAAGCAGACGTGCCCGGCGACGCCGACAGACCTCAACCTCTTCCCCGTCCCCGGCGCCGCCGCGTCCGCCGCCAAGCCGTGCCCGTCGTCTACGGCGGCGGCGGCCTCCGGCGCAGGCGGCACCACGACGACGACGACGACGTACCACAGCGTGTGCACGATCGAGAAGGTGAAGACGGCGCTGGAGCGGTTCGAGCGCGGCAAGCACCAGCACCACCAGCACCAGCAGCACAGCGCCGGCGCGTCCCCGTCGTCGTCGTCCGTCACCACCTCCTCCGTGAAGCGCCGGCGCCGAAGAAGAAGCCCCGGATCGACCTCAACGTGGGGTTCCTCGGCACCTAGCTTTCCTACCCTACCTTCACCTGCATCGCCACGGTGGACACATGTGACTAGCCATAGCTAGCTAGCCAGCCATGCCCCCAATTCTGTTAGGAAATCAATGAATCAATCAATCAAACACGTACTCCATAGAACACGAGGATGATCATGACGATGATGATGATGATACTAGTAGTCCTAGCTCCACTATGTAATTGATCAAAAAGCATTTTCGCCCTTAAATCAACTTTTC]
[+] EMBL C74416 [ CCCCTCTCCGTCTCGCCGTCTCTCAGCTCTCTCTGCTACTCCTCCTAGCTGCATGCTAAGCTAAATCTTCTGTTGGATTGCCTAGCTTTGCTGCTTTGCTTGCTTGCTGTGGTGTGGTGTGGTGTGAATTTTGTTGATTGGTCGGAGCTTGGGGTTGTGTATGGTGGTGGTGGTGTGGTAGCTAGTAGCTGCTAGTGCTAGATGGTCGCAGGGGCGTTGGGGTACATGGCGAGACCGGCGGACGGCGGCAGGGCGGCGGA CTCGTCACCAGGGATTTCCTCGGCGGCTGCGTCG CGCCGACGACGCCAGGGACGCCGCCGCCGCCGNA CAGCAACTG CAAGCACGACTCCGTGTCCGGCAAGCTGTCCCTGCAGAA CAGACGTGCCCGGCGACNC ACAGACCTCAA CTCTT CCCGT CCCGGCGCC ]
[+] EMBL C72489 [ GCATGCTAAGCTAAATCTTCTGTTGGATTGCCTAGCTTTGCTGCTTTGCTTGCTTGCTGTGGTGTGGTGTGGTGTGAATTTTGTTGATTGGTCGGAGCTTGGGGTTGTGTATGGTGGTGGTGGTGTGGTAGCTAGTAGCTGCTAGTGCTAGATGGTCGCAGGGGCGTTGGGGTACATGGCGAGAGCGGCGGACGGCGGCAGGGCGGCGGA NTCGTCACCAGGGATTTCCTCGGCGGCTGCGTCG CGCCGACGACGCCAGG ]
consensusID : consensus_10911#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 486 fasta sequence
[AAGCCCCCGTGCGGCGTCGGCTTCGGCGACGGCGCGGTGGACCAGGCGACGGTGCGACTC-CCGTCC-CGGC-GGC-GCGGC-GCATGGTGGCCGCCGCGTGCCCGAGGTGCTTCCTGTACGTGCTCATCTCCCGGTCGGACCCGCGGTGCCCGCGGTGCGAGTCGCACGTGCCGCCGCCGCCGTCGCCGGCGCCGAA-GAAGAAGCCCCGGATCGACCTCAACGTGGGGTTCCTCGGCACCTAGCTTTCCTACCCTACCTTCACCTGCATCGCCACGGTGGACACATGTGACTAGCCATAGCTAGCTAGCCA-GCCATGC-CCCCAATTCTGTTAGGAAATCAATGAATCAATCAATCAAACACGTACTCCATAGAACACGAGGATGATCATGACGATGATGATGATGATACTAGTAGTCCTAGCTCCACTATGTAATTGATC-AAAAGCATTTTCGCCCTTAAATCAACTTTTCCATTTTTGTCTTCAAAAAA]
[+] EMBL BI807944 [AAGCCCCCGTGCGGCGTCGGCTTCGGCGACGGCGCGGTGGACCAGGCGACGGTGCGACTC CCGTCC CGGC GGC GCGGC GCATGGT GCC CCGCGTGCCCGAGGTGCTTCCTGTACGTGCTCATCTCCCGGTCGGACCCGCGGTGCCC CGGTGCGAGTCGCACGTGCCGCCGCCGCCGTCGCCGGCGCCGAA GAAGAAGCCCCGGATCGACCTCAACGTGGGGTTCCTCGGCACCTAGCTTTCCTACCCTACCTTCACCTGCATCGCCACGGTGGACACATGTGACTAGCCATAGCTAGCTAGCCA GCCATGC CCCCAATTCTGTTAGGAAATCAATGAATCAATCAATCAAACACGTACTCCATAGAACACGAGGATGATCATGACGATGATGATGATGATACTAGTAGTCCTAGCTCCACTATGTAATTGATC AAAAGCATTTTCGCCCTTAAATCAACTTTTCCATTTTTGTCTTCAAAAAA]
[+] EMBL BI797198 [ GCGACTCGCCGTCCGCGGCGGGCGGCGGCGGCATGGTGGCCGCCGCGTGCCCGAGGTGCTTCCTGTACGTGCTCATCTCCCGGTCGGACCCGCGGTGCCCGCGGTGCGAGTCGCACGTGCCGCCGCCGCCGTCGCCGGCGCCGAACGAAGAAGCCCCGGATCGACCTC ACGTGGGGTTCCTCGGCACCTAGCTTTCCTACCCTACCTTCACCTGCATCGCCACGGTGGACACATGTGACTAGCCATAGCTAGCTAGCCA GCCATGC CCCCAATTCTGTTAGGAAATCAATGAATCAATCAATCAAACACGTAaaaa ]
[+] EMBL AU172820 [ c gGGC GGC G GCG GCATGGTGGCCGCCGCGTGCCCGAGGTGCTTCCTGTACGTGCTCATCTCCCGGTCGGACCCGCGGTGCCCNCGGTGCGAGTCGCACGTGCCGCCGCCGCCGTCGCCGGCGCCGAA GAAGAAGCCCCGGATCGACCTCAACGTGGGGTTCCTCGGCACCTAGCTTTCCTACCCTACCTTCACCTGCATCGCCACGGTGGACACATGTGACTAGCCATAGCTAGCTAGCCA GCCATGC CCCCAATTCTGTTAGGAAATCAATGAATCAATCAATCAAACACGTACTCCATAGAACACGAGGATGATCATGACGATGATGATGATGATACTAGTAGTCCTAGCTCCACTATGTAATTGATCAAAAAGCATTTTCGCCCTTAAATCAACTTTTCCATTTTTGTCTTCAAAAAA]
[+] EMBL BI810001 [ GACACATGTGACTAGCCATAGCTAGCTAGCCATGCCATGCACCCCAATTCTGTTAGGAAATCAATGAATCAATCAATCAAACACGTACTCCATAG ACACGAGGATGATCATGACGATGATGATGATGATACTAGTAGTCCTAGCTCCACTATGTAATTGATC AAAA CATTTTCGCCCTTAAAaaaaaaa ]
consensusID : consensus_10911#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 480 fasta sequence
[CCCGGGGGGGGGTTTTTGNAGGGCNNGGGGAAAAGGGAAAGNTTTAATTTCCCTTTCNGGGGGGGGGGGGGGATGGGCCCCCNCGNGCCCNAGGNGGTTTTNCGNAAAGGTTTNTTTTTCCGTTGNAACCCNGGGGCCCCNGGGGNGGGGTTNAAAANGCCCCCCCCCCCCTTTTCCCGGGCCGGNGAAGANCCCCCGTTTGAACTTTAAAGGGGGTTTCTTGGAACTNAGTTTNCAACCCTACCTTTANCNGGATTGCCAAGGGNGACACATGTGACTAGCCATAGCTAGCTAGCCAGCCATGCCCCCAATTCTGTTAGGAAATCAATGAATCAATCAATCAAACACGTACTCCATAGAACACGAGGATGATCATGACGATGATGATGATGATATTAGTATTCCTAGTTCCACTATGTAATTGATCAAAAAGCATTTTCGCCCTTAAATCAACTTTTCCATTTTTGTCAAAAAAAAAAA]
[+] EMBL AA753410 [CCCGGGGGGGGGTTTTTGNAGGGCNNGGGGAAAAGGGAAAGNTTTAATTTCCCTTTCNGGGGGGGGGGGGGGATGGGCCCCCNCGNGCCCNAGGNGGTTTTNCGNAAAGGTTTNTTTTTCCGTTGNAACCCNGGGGCCCCNGGGGNGGGGTTNAAAANGCCCCCCCCCCCCTTTTCCCGGGCCGGNGAAGANCCCCCGTTTGAACTTTAAAGGGGGTTTCTTGGAACTNAGTTTNCAACCCTACCTTTANCNGGATTGCCAAGGGNGACACATGTGACTAGCCATAGCTAGCTAGCCAGCCATGCCCCCAATTCTGTTAGGAAATCAATGAATCAATCAATCAAACACGTACTCCATAGAACACGAGGATGATCATGACGATGATGATGATGATATTAGTATTCCTAGTTCCACTATGTAATTGATCAAAAAGCATTTTCGCCCTTAAATCAACTTTTCCATTTTTGTCAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10911#1 ------------------------------------------------------------
consensus_10911#2 ------------------------------------------------------------
consensus_10911#0 TCCCCCTCTCCCTCTCCCTTGCTCTCTCTTCTTTAACCTGTTTATATTTATCTCCCCCTC 60
consensus_10911#1 ------------------------------------------------------------
consensus_10911#2 ------------------------------------------------------------
consensus_10911#0 TCCGTCTCGCCGTCTCTCAGCTCTCTCTGCTACTCCTCCTAGCTGCATGCTAAGCTAAAT 120
consensus_10911#1 ------------------------------------------------------------
consensus_10911#2 ------------------------------------------------------------
consensus_10911#0 CTTCTGTTGGATTGCCTAGCTTTGCTGCTTTGCTTGCTTGCTGTGGTGTGGTGTGGTGTG 180
consensus_10911#1 ------------------------------------------------------------
consensus_10911#2 ------------------------------------------------------------
consensus_10911#0 AATTTTGTTGATTGGTCGGAGCTTGGGGTTGTGTATGGTGGTGGTGGTGTGGTAGCTAGT 240
consensus_10911#1 ------------------------------------------------------------
consensus_10911#2 ------------------------------------------------------------
consensus_10911#0 AGCTGCTAGTGCTAGATGGTCGCAGGGGCGTTGGGGTACATGGCGAGAGCGGCGGACGGC 300
consensus_10911#1 ------------------------------------------------------------
consensus_10911#2 ------------------------------------------------------------
consensus_10911#0 GGCAGGGCGGCGGACTCGTCACCAGGGATTTCCTCGGCGGCTGCGTCGCGCCGACGACGC 360
consensus_10911#1 ------------------------------------------------------------
consensus_10911#2 ------------------------------------------------------------
consensus_10911#0 CAGGGACGCCGCCGCCGCCGCAGCAGCAACTGCCAGGCACGACTCCGTGTCCGGCAAGCT 420
consensus_10911#1 ------------------------------------------------------------
consensus_10911#2 ------------------------------------------------------------
consensus_10911#0 GTCCCTGCAGAAGCAGACGTGCCCGGCGACGCCGACAGACCTCAACCTCTTCCCCGTCCC 480
consensus_10911#1 ---------------------------------------------AAGCCCCCGTGCGGC 15
consensus_10911#2 ------------------------------------------------------CCCGGG 6
consensus_10911#0 CGGCGCCGCCGCGTCCGCCGCCAAGCCGTGCCCGTCGTCTACGGCGGCGGCGGCCTCCGG 540
* *
consensus_10911#1 GTCGGCTTCGGCGACGGCGCGGTGGACCAGGCGACGGTGCGACTCCCGTCCCGGCGGCGC 75
consensus_10911#2 GGGGGGTTTTTGNAGGGCNNGG-GGAAAAGGGAAAGNTTTAATTTCCCTTTCNGGGGGGG 65
consensus_10911#0 CGCAGGCGGCACCACGACGACGACGACGACGTACCACAGCGTGTGCACGATCGAGAAGGT 600
* * * * * ** * * * * * *
consensus_10911#1 GGCGCATG---GTGGCCGCCGCGTGCCCGAGGTG-CTTCCTGTACGTGCTCATCTCCCGG 131
consensus_10911#2 GGGGGGGA---TGGGCCCCCNCGNGCCCNAGGNGGTTTTNCGNAAAGGTTTNTTTTTCCG 122
consensus_10911#0 GAAGACGGCGCTGGAGCGGTTCGAGCGCGGCAAG---CACCAGCACCACCAGCACCAGCA 657
* * * * ** ** * *
consensus_10911#1 TCGGACCCGCGGTGCCCGCGGTGCGAG--TCGCACGTGCCGCCGCCGCCGT----CGCCG 185
consensus_10911#2 TTGNAACCCNGGGGCCCCNGGGGNGGGGTTNAAAANGCCCCCCCCCCCCTT----TTCCC 178
consensus_10911#0 GCACAGCGCCGGCGCGTCCCCGTCGTCGTCGTCCGTCACCACCTCCTCCGTGAAGCGCCG 717
* * ** ** * ** ** ** ** * **
consensus_10911#1 GCGCCGAAGAAGAAGCCCCGGATCGACCTCAACGTGGGGTTCCTCGGCACCTAGCTTTCC 245
consensus_10911#2 GGGCCGGNGAAGANCCCCCGTTTGAACTTTAAAG-GGGGTTTCTTGGAACTNAG-TTTNC 236
consensus_10911#0 GCGCCGAAGAAGAAGCCCCGGATCGACCTCAACGTGGGGTTCCTCGGCACCTAGCTTTCC 777
* **** ***** ***** * ** * ** * ****** ** ** ** ** *** *
consensus_10911#1 TACCCTACCTTCACCTGCATCGCCACGGTGGACACATGTGACTAGCCATAGCTAGCTAGC 305
consensus_10911#2 AACCCTACCTTTANCNGGATTGCCAAGGGNGACACATGTGACTAGCCATAGCTAGCTAGC 296
consensus_10911#0 TACCCTACCTTCACCTGCATCGCCACGGTGGACACATGTGACTAGCCATAGCTAGCTAGC 837
********** * * * ** **** ** ******************************
consensus_10911#1 CAGCCATGCCCCCAATTCTGTTAGGAAATCAATGAATCAATCAATCAAACACGTACTCCA 365
consensus_10911#2 CAGCCATGCCCCCAATTCTGTTAGGAAATCAATGAATCAATCAATCAAACACGTACTCCA 356
consensus_10911#0 CAGCCATGCCCCCAATTCTGTTAGGAAATCAATGAATCAATCAATCAAACACGTACTCCA 897
************************************************************
consensus_10911#1 TAGAACACGAGGATGATCATGACGATGATGATGATGATACTAGTAGTCCTAGCTCCACTA 425
consensus_10911#2 TAGAACACGAGGATGATCATGACGATGATGATGATGATATTAGTATTCCTAGTTCCACTA 416
consensus_10911#0 TAGAACACGAGGATGATCATGACGATGATGATGATGATACTAGTAGTCCTAGCTCCACTA 957
*************************************** ***** ****** *******
consensus_10911#1 TGTAATTGATCAAAA-GCATTTTCGCCCTTAAATCAACTTTTCCATTTTTGTCTTCAAAA 484
consensus_10911#2 TGTAATTGATCAAAAAGCATTTTCGCCCTTAAATCAACTTTTCCATTTTTGTCAAAAAAA 476
consensus_10911#0 TGTAATTGATCAAAAAGCATTTTCGCCCTTAAATCAACTTTTC----------------- 1000
*************** ***************************
consensus_10911#1 AA-- 486
consensus_10911#2 AAAA 480
consensus_10911#0 ----
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||