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Oryza sativa
cluster # 10912 cluster # 10912       Sequences # 8       consensus # 5


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_10912#0 length = 1546 sequences # 4  
consensus_10912#1 length = 580 sequences # 1  
consensus_10912#2 length = 505 sequences # 1  
consensus_10912#3 length = 321 sequences # 1  
consensus_10912#4 length = 231 sequences # 1  

consensusID : consensus_10912#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1546
fasta sequence
                              [AACTCCGGCCGCCCGCCGCCGCCGCCGCCGCTCGCGTGCAGCAAGCGTTGTGCTAGCTAGCGCCGCCCCGCCCCTCCGGTGCCGACTAGTTGCTGTGGCTGGCGGCGCGCGCCGCCTGACTTCCTCTCCTTCTCCGGTGCCTCACCTCAGGCTCTGTTGAGAACAGGAGGGGTGAGGGGGAAGATGCCGAAGAAGGGGACGAAATCGAGGAAGGGCACGGACGATGAGCCCAAGCAGGAGGAGAAGAACAAGCTTCCGGAGCACCTTGAGGTCCAGCGGACGCGTGTGGTCTGCAAGGGCGACGCCCCCGTAAATACTGAAGGTTTTCAATACGCTGGTGCTTTTGCTGCTATGGGAATCGATAACAGTGTCTCAGCGGATAAGTTTTGCAAAAACTTTAAAGTCGTGGTAAATCGACTAACGGAAGATGATATGGAGTTTGATATGATTGGTATTGATGCATCAATGGCTAATGCTTTTCGGAGAATCCTTATAGCAGAGGTTCCTACAATGGCAATTGAGAAAGTTTTAATGGCTGACAATACCTCAGTTATAGCAGATGAAGTTCTTTCACATAGACTTGGCCTTATTCCACTTGATGCAGATCCTAGGCTTTTTGAATATATCTCAGAAAATGATGTCCCAACTGAAAGAAACACTATTGTGTACAAACTCCATGTTTCATGTAAAAAGGGTTCCCCACGGCTTACAGTGAAGTCTGGTGATTTAGAGTGGCTGCCAGAAGGTAGCCAACTACCTTTGGCATCTCCTGCTCAATCTGGGGACAAACAAAAGACGTACACTTCCTTCAGCCAAAGCCAGAAGGATATCTTAGAAAAGCCTCTTGGTGTGAAATTTAAAGACATAACTATTGCGAGGCTTGGGCCAGGCCAGGCTATTGAACTTGAGGTACATGCTGTTAAGGGAATAGGAAAAGTGCATGCCAAGTGGTCCCCAGTTGCTACAGCTTGGTATAGAATGCTCCCTGAGGTTGTTCTTCGTGAAGAAATCAAAGATGCTGATGCAGAGATGCTAGTGGCAAAGTGCCCAGTCAATGTTTTTGACATCGAAGACCTGGGAAACGGGGAAAAGAGAGCGGTTGTTGCTAGGCCAAGAGCATGCACCCTTTGTAGGCAATGCGTTATGGGACCTACTGGGGAAGTTATGGGACCTACTGTGGAACAAGTAGAACTACGGCGTGTCAGAGACCACTTCATCTTTACGATTGAGTCTACTGGAGCTCTACCGCCGGAGATGCTGTTCACAGAGGCTGTGAGGATCCTCGAGGAGAAGTGCGAGAGAGTGATATCTGGACTGTCATGAGCTCTCTAGTGGTCACTGTAGTTTTTCACGGTTATATTCTGTTGGGAGGGTGTTTGTGCTAAGATTTATCTCCTGACGAAGAGCTGAGTTGGTAATGTTTCTTATAATCTTGTCTACATCAGGCTGCTGTAACAGAAACAAATTAAAGCTCGGCATTGGTTTTTTGTTGTTCCAGTTTACCATGCACCCTAGTTGCAGTTTACAGTACTTGTTATTCAGGCAC]

[+] EMBL CB618756             [AACTCCGGCCGCCCGCCGCCGCCGCCGCCGCTCGCGTGCAGCAAGCGTTGTGCTAGCTAGCGCCGCCCCGCCCCTCCGGTGCCGACTAGTTGCTGTGGCTGGCGGCGCGCGCCGCCTGACTTCCTCTCCTTCTCCGGTGCCTCACCTCAGGCTCTGTTGAGAACAGGAGGGGTGAGGGGGAAGATGCCGAAGAAGGGGACGAAATCGAGGAAGGGCACGGACGATGAGCCCAAGCAGGAGGAGAAGAACAAGCTTCCGGAGCACCTTGAGGTCCAGCGGACGCGTGTGGTCTGCAAGGGCGACGCCCCCGTAAATACTGAAGGTTTTCAATACGCTGGTGCTTTTGCTGCTATGGGAATCGATAACAGTGTCTCAGCGGATAAGTTTTGCAAAAACTTTAAAGTCGTGGTAAATCGACTAACGGAAGATGATATGGAGTTTGATATGATTGGTATTGATGCATCAATGGCTAATGCTTTTCGGAGAATCCTTATAGCAGAGGTTCCTACAATGGCAATTGAGAAAGTTTTAATGGCTGACAATACCTCAGTTATAGCAGATGAAGTTCTTTCACATAGACTTGGCCTTATTCCACTTGATGCAGATCCTAGGCTTTTTGAATATATCTCAGAAAATGATGTCCCAACTGAAAGAAACACTATTGTGTACAAACTCCATGTTTCATGTAAAAAGGGTTCCCCACGGCTTACAGTGAAGTCTGGTGATTTAGAGTGGCTGCCAGAAGGTAGCCAACTACCTTTGGCATCTCCTGCTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL AK102201             [   TCCGGCCGCCCGCCGCCGCCGCCGCCGCTCGCGTGCAGCAAGCGTTGTGCTAGCTAGCGCCGCCCCACCCCTCCGGTGCCGACTAGTTGCTGTGGCTGGCGGCGCGCGCCGCCTGACTTCCTCTCCTTCTCCGGTGCCTCACCTCAGGCTCTGTTGAGAACAGGAGGGGTGAGGGGGAAGATGCCGAAGAAGGGGACGAAATCGAGGAAGGGCACGGACGATGAGCCCAAGCAGGAGGAGAAGAACAAGCTTCCGGAGCACCTTGAGGTCCAGCGGACGCGTGTGGTCTGCAAGGGCGACGCCCCCGTAAATACTGAAGGTTTTCAATACGCTGGTGCTTTTGCTGCTATGGGAATCGATAACAGTGTCTCAGCGGATAAGTTTTGCAAAAACTTTAAAGTCGTGGTAAATCGACTTACGGAAGATGATATGGAGTTTGATATGATTGGTATTGATGCATCAATGGCTAATGCTTTTCGGAGAATCCTTATAGCAGAGGTTCCTACAATGGCAATTGAGAAAGTTTTAATGGCTGACAATACCTCAGTTATAGCAGATGAAGTTCTTTCACATAGACTTGGCCTTATTCCACTTGATGCAGATCCTAGGCTTTTTGAATATATCTCAGAAAATGATGTCCCAACTGAAAGAAACACTATTGTGTACAAACTCCATGTTTCATGTAAAAAGGGTTCCCCACGGCTTACAGTGAAGTCTGGTGATTTAGAGTGGCTGCCAGAAGGTAGCCAACTACCTTTGGCATCTCCTGCTCAATCTGGGGACAAACAAAAGACGTACACTTCCTTCAGCCAAAGCCAGAAGGATATCTTAGAAAAGCCTCTTGGTGTGAAATTTAAAGACATAACTATTGCGAGGCTTGGGCCAGGCCAGGCTATTGAACTTGAGGTACATGCTGTTAAGGGAATAGGAAAAGTGCATGCCAAGTGGTCCCCAGTTGCTACAGCTTGGTATAGAATGCTCCCTGAGGTTGTTCTTCGTGAAGAAATCAAAGATGCTGATGCAGAGATGCTAGTGGCAAAGTGCCCAGTCAATGTTTTTGACATCGAAGACCTGGGAAACGGGGAAAAGAGAGCGGTTGTTGCTAGGCCAAGAGCATGCACCCTTTGTAGGCAATGCGTTATGGGACCTACTGGGGAAGTTATGGGACCTACTGTGGAACAAGTAGAACTACGGCGTGTCAGAGACCACTTCATCTTTACGATTGAGTCTACTGGAGCTCTACCGCCGGAGATGCTGTTCACAGAGGCTGTGAGGATCCTCGAGGAGAAGTGCGAGAGAGTGATATCTGGACTGTCATGAGCTCTCTAGTGGTCACTGTAGTTTTTCACGGTTATATTCTGTTGGGAGGGTGTTTGTGCTAAGATTTATCTCCTGACGAAGAGCTGAGTTGGTAATGTTTCTTATAATCTTGTCTACATCAGGCTGCTGTAACAGAAACAAATTAAAGCTCGGCATTGGTTTTTTGTTGTTCCAGTTTACCATGCACCCTAGTTGCAGTTTACAGTACTTGTTATTCAGGCAC]
[-] EMBL CB618757             [                                                                                                                                                                                                                                                                                                                                                                                                           CTTTAAAGTCGTGGTAAATCGACTAACGGAAGATGATATGGAGTTGNATATGATTGGTATTGATGCATCAATGGCTAATGCTTTTCGGAGAATCCTTATAGCAGAGGTTCCTACAATGGCAATTGAGAAAGTTTTAATGGCTGACAATACCTCAGTTATAGCAGATGAAGTTCTTTCACATAGACTTGGCCTTATTCCACTTGATGCAGATCCTAGGCTTTTTGAATATATCTCAGAAAATGATGTCCCAACTGAAAGAAACACTATTGTGTACAAACTCCATGTTTCATGTAAAAAGGGTTCCCCACGGCTTACAGTGAAGTCTGGTGATTTAGAGTGGCTGCCAGAAGGTAGCCAACTACCTTTGGCATCTCCTGCTCAATCTGGGGACAAACAAAAGACGTACACTTCCTTCAGCCAAAGCCAGAAGGATATCTTAGAAAAGCCTCTTGGTGTGAAATTTAAAGACATAACTATTGCGAGGCTTGGGCCAGGCCAGGCTATTGAACTTGAGGTACATGCTGTTAAGGGAATAGGAAAAGTGCATGCCAAGTGGTCCCCAGTTGCTACAGCTTGGTATAGAATGCTCCCTGAGGTTGTTCTTCGTGAAGAAATCAAAGATGCTGATGCAGAGATGCTAGTGGCAAAGTGCCCAGTCAATGTTTTTGACATTGAAGACCTGGGAAACGGGGAAAAGAGAGCGGTTGTTGCTAGGCCAAGAGCATGCACCCTTTGTAGGCAATGCGTTATGGGACCTACTGGGGAAGTTATGGGACCTACTGTGGAACAAGTAGAACTACGGCGTGTCAGAGACCACTTCATCTTTACGATTGAGTCTACTGGAGCTCTACCGCCAGAGATGCTGTTCACAGAGGCT                                                                                                                                                                                                                                                                                  ]
[+] EMBL OS2045A              [                                                                                                                                                                                                                                                                                                                                                                                                                                                      TTTGATATGATTGGTATTGATGCATCAATGGCTAATGCTTTTCGGAGAATCCTTATAGCAGAGGTTCCTACAATGGCAATTGAGAAAGTTTTAATGGCTGACAATACCTCAGTTATAGCAGATGAAGTTCTTTCACATAGACTTGGCCTTATTCCACTTGATGCAGATCCTAGGCTTTTTGA  ATATCTCAGAAAATGATGTCCCAACTGAAAGAAACACTATTGTGTACAAACTCCATGTTTCATGTAAAAAGGGTTCCCCACGGCTTACAGTGAAGTCTGGTGATTTAGAGTGGCTGCCAGAAGGTAGCCANCTACCTTTGGCATCTCCTGCTCAATCTGGGGACAAACAAAAGACGNAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]


>consensus_10912#0 AACTCCGGCCGCCCGCCGCCGCCGCCGCCGCTCGCGTGCAGCAAGCGTTGTGCTAGCTAG CGCCGCCCCGCCCCTCCGGTGCCGACTAGTTGCTGTGGCTGGCGGCGCGCGCCGCCTGAC TTCCTCTCCTTCTCCGGTGCCTCACCTCAGGCTCTGTTGAGAACAGGAGGGGTGAGGGGG AAGATGCCGAAGAAGGGGACGAAATCGAGGAAGGGCACGGACGATGAGCCCAAGCAGGAG GAGAAGAACAAGCTTCCGGAGCACCTTGAGGTCCAGCGGACGCGTGTGGTCTGCAAGGGC GACGCCCCCGTAAATACTGAAGGTTTTCAATACGCTGGTGCTTTTGCTGCTATGGGAATC GATAACAGTGTCTCAGCGGATAAGTTTTGCAAAAACTTTAAAGTCGTGGTAAATCGACTA ACGGAAGATGATATGGAGTTTGATATGATTGGTATTGATGCATCAATGGCTAATGCTTTT CGGAGAATCCTTATAGCAGAGGTTCCTACAATGGCAATTGAGAAAGTTTTAATGGCTGAC AATACCTCAGTTATAGCAGATGAAGTTCTTTCACATAGACTTGGCCTTATTCCACTTGAT GCAGATCCTAGGCTTTTTGAATATATCTCAGAAAATGATGTCCCAACTGAAAGAAACACT ATTGTGTACAAACTCCATGTTTCATGTAAAAAGGGTTCCCCACGGCTTACAGTGAAGTCT GGTGATTTAGAGTGGCTGCCAGAAGGTAGCCAACTACCTTTGGCATCTCCTGCTCAATCT GGGGACAAACAAAAGACGTACACTTCCTTCAGCCAAAGCCAGAAGGATATCTTAGAAAAG CCTCTTGGTGTGAAATTTAAAGACATAACTATTGCGAGGCTTGGGCCAGGCCAGGCTATT GAACTTGAGGTACATGCTGTTAAGGGAATAGGAAAAGTGCATGCCAAGTGGTCCCCAGTT GCTACAGCTTGGTATAGAATGCTCCCTGAGGTTGTTCTTCGTGAAGAAATCAAAGATGCT GATGCAGAGATGCTAGTGGCAAAGTGCCCAGTCAATGTTTTTGACATCGAAGACCTGGGA AACGGGGAAAAGAGAGCGGTTGTTGCTAGGCCAAGAGCATGCACCCTTTGTAGGCAATGC GTTATGGGACCTACTGGGGAAGTTATGGGACCTACTGTGGAACAAGTAGAACTACGGCGT GTCAGAGACCACTTCATCTTTACGATTGAGTCTACTGGAGCTCTACCGCCGGAGATGCTG TTCACAGAGGCTGTGAGGATCCTCGAGGAGAAGTGCGAGAGAGTGATATCTGGACTGTCA TGAGCTCTCTAGTGGTCACTGTAGTTTTTCACGGTTATATTCTGTTGGGAGGGTGTTTGT GCTAAGATTTATCTCCTGACGAAGAGCTGAGTTGGTAATGTTTCTTATAATCTTGTCTAC ATCAGGCTGCTGTAACAGAAACAAATTAAAGCTCGGCATTGGTTTTTTGTTGTTCCAGTT TACCATGCACCCTAGTTGCAGTTTACAGTACTTGTTATTCAGGCAC



consensusID : consensus_10912#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 580
fasta sequence
                              [AATCTGGGNCCAAACCAAAAGACGTACACTCCCTTCAGCCAAAGCCAGAAGGATTATCTTAGAAAAGCCTCTTGGTNTGAAATTTAAAGACATTACCTATTGCCGAGGCTTGGCCCAGGCCAGGCTATTGAACTTGAGGTACNATGCTGTTAAGGGAATGGGAAAAGTGCATGCCCAAGTGGTCCCCAGTTGCTACAGCTTGGTATAGAATGCTCCCTGAGGTTGGTTCTTCGTGAAGAAATCAAAGATGCTGATGCAGAGATGCTAGTGGCAAAGTGCCCAGTCAATGTTTTTGACATCGAAGACCTGGGAAACGGGGAAAAGAGAGCGGTTGTTGCTAGGCCAAGAGCATGCACCCTTTGTAGGCAATGCGTTATGGGACCTACTGGGGAAGTTATGGGACCTACTGTAGTTTTTCACGGTTATATTCTGTTGGGAGGGTGTTTGTGCTAAGATTTATCTCCTGACGAAGAGCTGAGTTGGTAATGTTTCTTATAATCTTGTCTACATCAGGCTGCTGTAACAGAAACAAATTAAAGCTCGGCATTGGTTTTTAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL C98350               [AATCTGGGNCCAAACCAAAAGACGTACACTCCCTTCAGCCAAAGCCAGAAGGATTATCTTAGAAAAGCCTCTTGGTNTGAAATTTAAAGACATTACCTATTGCCGAGGCTTGGCCCAGGCCAGGCTATTGAACTTGAGGTACNATGCTGTTAAGGGAATGGGAAAAGTGCATGCCCAAGTGGTCCCCAGTTGCTACAGCTTGGTATAGAATGCTCCCTGAGGTTGGTTCTTCGTGAAGAAATCAAAGATGCTGATGCAGAGATGCTAGTGGCAAAGTGCCCAGTCAATGTTTTTGACATCGAAGACCTGGGAAACGGGGAAAAGAGAGCGGTTGTTGCTAGGCCAAGAGCATGCACCCTTTGTAGGCAATGCGTTATGGGACCTACTGGGGAAGTTATGGGACCTACTGTAGTTTTTCACGGTTATATTCTGTTGGGAGGGTGTTTGTGCTAAGATTTATCTCCTGACGAAGAGCTGAGTTGGTAATGTTTCTTATAATCTTGTCTACATCAGGCTGCTGTAACAGAAACAAATTAAAGCTCGGCATTGGTTTTTAAAAAAAAAAAAAAAAAAAAAAAAA]


>consensus_10912#1 AATCTGGGNCCAAACCAAAAGACGTACACTCCCTTCAGCCAAAGCCAGAAGGATTATCTT AGAAAAGCCTCTTGGTNTGAAATTTAAAGACATTACCTATTGCCGAGGCTTGGCCCAGGC CAGGCTATTGAACTTGAGGTACNATGCTGTTAAGGGAATGGGAAAAGTGCATGCCCAAGT GGTCCCCAGTTGCTACAGCTTGGTATAGAATGCTCCCTGAGGTTGGTTCTTCGTGAAGAA ATCAAAGATGCTGATGCAGAGATGCTAGTGGCAAAGTGCCCAGTCAATGTTTTTGACATC GAAGACCTGGGAAACGGGGAAAAGAGAGCGGTTGTTGCTAGGCCAAGAGCATGCACCCTT TGTAGGCAATGCGTTATGGGACCTACTGGGGAAGTTATGGGACCTACTGTAGTTTTTCAC GGTTATATTCTGTTGGGAGGGTGTTTGTGCTAAGATTTATCTCCTGACGAAGAGCTGAGT TGGTAATGTTTCTTATAATCTTGTCTACATCAGGCTGCTGTAACAGAAACAAATTAAAGC TCGGCATTGGTTTTTAAAAAAAAAAAAAAAAAAAAAAAAA



consensusID : consensus_10912#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 505
fasta sequence
                              [GAGACCAAAACTNGANTTCTTTCATTGGGACAAACAAAANAGAAATTCTTCACCAAANCAGGAGGANTTTAGGAAANCTCTTGGTGTGAAATTAAAGACATAATATNGCGAGGCTTGGCCAGNCCAGGCTATTGAACTTGAGTAACATGCTGTTAAGGGAATAGGAAAAGTGCATGCCAAGTGTTCCCCAGTTGTACAGCTTGGTATAGAATGCTTCCCTGAGGTTGTTCTTTCGTGAAGAAATCAAAGATGCTGATGCAGAGATGCTAGTGGCAAAGTGCCCAGTCAATGTTTTTGACATCGAAGACCTGGGAAACGGGGAAAAGAGAGCGGTTGTTGCTAGGCCAAGAGCATGCACCCTTTGTAGGCAATGCGTTATGGGACCTACTGGGGAAGTTATGGGACCTACTGTGGAACAAGTAGAACTACGGCGTGTCAGAGACCACTTCATCTTTACGATTGAGTCTACTGGAGCTCTACCGCCGGAGATGCTGTTCACAGAGGC]

[+] EMBL AA753401             [GAGACCAAAACTNGANTTCTTTCATTGGGACAAACAAAANAGAAATTCTTCACCAAANCAGGAGGANTTTAGGAAANCTCTTGGTGTGAAATTAAAGACATAATATNGCGAGGCTTGGCCAGNCCAGGCTATTGAACTTGAGTAACATGCTGTTAAGGGAATAGGAAAAGTGCATGCCAAGTGTTCCCCAGTTGTACAGCTTGGTATAGAATGCTTCCCTGAGGTTGTTCTTTCGTGAAGAAATCAAAGATGCTGATGCAGAGATGCTAGTGGCAAAGTGCCCAGTCAATGTTTTTGACATCGAAGACCTGGGAAACGGGGAAAAGAGAGCGGTTGTTGCTAGGCCAAGAGCATGCACCCTTTGTAGGCAATGCGTTATGGGACCTACTGGGGAAGTTATGGGACCTACTGTGGAACAAGTAGAACTACGGCGTGTCAGAGACCACTTCATCTTTACGATTGAGTCTACTGGAGCTCTACCGCCGGAGATGCTGTTCACAGAGGC]


>consensus_10912#2 GAGACCAAAACTNGANTTCTTTCATTGGGACAAACAAAANAGAAATTCTTCACCAAANCA GGAGGANTTTAGGAAANCTCTTGGTGTGAAATTAAAGACATAATATNGCGAGGCTTGGCC AGNCCAGGCTATTGAACTTGAGTAACATGCTGTTAAGGGAATAGGAAAAGTGCATGCCAA GTGTTCCCCAGTTGTACAGCTTGGTATAGAATGCTTCCCTGAGGTTGTTCTTTCGTGAAG AAATCAAAGATGCTGATGCAGAGATGCTAGTGGCAAAGTGCCCAGTCAATGTTTTTGACA TCGAAGACCTGGGAAACGGGGAAAAGAGAGCGGTTGTTGCTAGGCCAAGAGCATGCACCC TTTGTAGGCAATGCGTTATGGGACCTACTGGGGAAGTTATGGGACCTACTGTGGAACAAG TAGAACTACGGCGTGTCAGAGACCACTTCATCTTTACGATTGAGTCTACTGGAGCTCTAC CGCCGGAGATGCTGTTCACAGAGGC



consensusID : consensus_10912#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 321
fasta sequence
                              [CGAGCTCGTSCANATNTCGCAGAGGTAAWAGAACACTATTTGTGTACANTNCATGTTTTCATGTAAAAAGGGTTCCCCACGGCTTACAGTGAAGTCTGGTGATTTAGAGTGGCTGCCAGAAGGTAGCCAACTACCTTTGGCATCTTCTGCTCAATCTGGGGACAAACAAAAGACGTACACTTCCTTCAGCCAAAGCCAGAAGGATATCTTAGAAAAGCCTCTTGGTGTGAAATTTAAAGACATAACTATTGCGAGRCTTGGGCCAGGCCAGGCTATTGAACTTGAGGTACATDCTGTTAAGGGAATAGGAAAGNGCATGCC]

[+] EMBL BE229455             [CGAGCTCGTSCANATNTCGCAGAGGTAAWAGAACACTATTTGTGTACANTNCATGTTTTCATGTAAAAAGGGTTCCCCACGGCTTACAGTGAAGTCTGGTGATTTAGAGTGGCTGCCAGAAGGTAGCCAACTACCTTTGGCATCTTCTGCTCAATCTGGGGACAAACAAAAGACGTACACTTCCTTCAGCCAAAGCCAGAAGGATATCTTAGAAAAGCCTCTTGGTGTGAAATTTAAAGACATAACTATTGCGAGRCTTGGGCCAGGCCAGGCTATTGAACTTGAGGTACATDCTGTTAAGGGAATAGGAAAGNGCATGCC]


>consensus_10912#3 CGAGCTCGTSCANATNTCGCAGAGGTAAWAGAACACTATTTGTGTACANTNCATGTTTTC ATGTAAAAAGGGTTCCCCACGGCTTACAGTGAAGTCTGGTGATTTAGAGTGGCTGCCAGA AGGTAGCCAACTACCTTTGGCATCTTCTGCTCAATCTGGGGACAAACAAAAGACGTACAC TTCCTTCAGCCAAAGCCAGAAGGATATCTTAGAAAAGCCTCTTGGTGTGAAATTTAAAGA CATAACTATTGCGAGRCTTGGGCCAGGCCAGGCTATTGAACTTGAGGTACATDCTGTTAA GGGAATAGGAAAGNGCATGCC



consensusID : consensus_10912#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 231
fasta sequence
                              [CGCTCGGTACAGCAAGCCTTGTGCTAGCTAGCCCCGCCCCACCCCTCCGCCACCGACTAGTTGCTGTGGCTGGCGGCAACATGACTTCCTCTCCTTTACCGGTGCCTCACCTCAGGCTCTGTTGAGAACAGGAGGGGTGAGGGGGAAGATGCGAAGAAGGGGACGAATCGAGGAGGGCACGGACGATGAGCCAAGCAGGAGGAGAAGAACAAGCTTCCGAGCACCTTCACG]

[+] EMBL D42434               [CGCTCGGTACAGCAAGCCTTGTGCTAGCTAGCCCCGCCCCACCCCTCCGCCACCGACTAGTTGCTGTGGCTGGCGGCAACATGACTTCCTCTCCTTTACCGGTGCCTCACCTCAGGCTCTGTTGAGAACAGGAGGGGTGAGGGGGAAGATGCGAAGAAGGGGACGAATCGAGGAGGGCACGGACGATGAGCCAAGCAGGAGGAGAAGAACAAGCTTCCGAGCACCTTCACG]


>consensus_10912#4 CGCTCGGTACAGCAAGCCTTGTGCTAGCTAGCCCCGCCCCACCCCTCCGCCACCGACTAG TTGCTGTGGCTGGCGGCAACATGACTTCCTCTCCTTTACCGGTGCCTCACCTCAGGCTCT GTTGAGAACAGGAGGGGTGAGGGGGAAGATGCGAAGAAGGGGACGAATCGAGGAGGGCAC GGACGATGAGCCAAGCAGGAGGAGAAGAACAAGCTTCCGAGCACCTTCACG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10912#1      ------------------------------------------------------------
consensus_10912#2      ------------------------------------------------------------
consensus_10912#3      ------------------------------------------------------------
consensus_10912#0      AACTCCGGCCGCCCGCCGCCGCCGCCGCCGCTCGCGTGCAGCAAGCGTTGTGCTAGCTAG 60
consensus_10912#4      ------------------------------------------------------------
                                                                                   

consensus_10912#1      ------------------------------------------------------------
consensus_10912#2      ------------------------------------------------------------
consensus_10912#3      ------------------------------------------------------------
consensus_10912#0      CGCCGCCCCGCCCCTCCGGTGCCGACTAGTTGCTGTGGCTGGCGGCGCGCGCCGCCTGAC 120
consensus_10912#4      ------------------------------------------------------------
                                                                                   

consensus_10912#1      ------------------------------------------------------------
consensus_10912#2      ------------------------------------------------------------
consensus_10912#3      ------------------------------------------------------------
consensus_10912#0      TTCCTCTCCTTCTCCGGTGCCTCACCTCAGGCTCTGTTGAGAACAGGAGGGGTGAGGGGG 180
consensus_10912#4      ------------------------------------------------------------
                                                                                   

consensus_10912#1      ------------------------------------------------------------
consensus_10912#2      ------------------------------------------------------------
consensus_10912#3      ------------------------------------------------------------
consensus_10912#0      AAGATGCCGAAGAAGGGGACGAAATCGAGGAAGGGCACGGACGATGAGCCCAAGCAGGAG 240
consensus_10912#4      ------------------------------------------------------------
                                                                                   

consensus_10912#1      ------------------------------------------------------------
consensus_10912#2      ------------------------------------------------------------
consensus_10912#3      ------------------------------------------------------------
consensus_10912#0      GAGAAGAACAAGCTTCCGGAGCACCTTGAGGTCCAGCGGACGCGTGTGGTCTGCAAGGGC 300
consensus_10912#4      ------------------------------------------------------------
                                                                                   

consensus_10912#1      ------------------------------------------------------------
consensus_10912#2      ------------------------------------------------------------
consensus_10912#3      ------------------------------------------------------------
consensus_10912#0      GACGCCCCCGTAAATACTGAAGGTTTTCAATACGCTGGTGCTTTTGCTGCTATGGGAATC 360
consensus_10912#4      ------------------------------------------------------------
                                                                                   

consensus_10912#1      ------------------------------------------------------------
consensus_10912#2      ------------------------------------------------------------
consensus_10912#3      ------------------------------------------------------------
consensus_10912#0      GATAACAGTGTCTCAGCGGATAAGTTTTGCAAAAACTTTAAAGTCGTGGTAAATCGACTA 420
consensus_10912#4      ------------------------------------------------------------
                                                                                   

consensus_10912#1      ------------------------------------------------------------
consensus_10912#2      ------------------------------------------------------------
consensus_10912#3      ------------------------------------------------------------
consensus_10912#0      ACGGAAGATGATATGGAGTTTGATATGATTGGTATTGATGCATCAATGGCTAATGCTTTT 480
consensus_10912#4      ------------------------------------------------------------
                                                                                   

consensus_10912#1      ------------------------------------------------------------
consensus_10912#2      ------------------------------------------------------------
consensus_10912#3      ------------------------------------------------------------
consensus_10912#0      CGGAGAATCCTTATAGCAGAGGTTCCTACAATGGCAATTGAGAAAGTTTTAATGGCTGAC 540
consensus_10912#4      ------------------------------------------------------------
                                                                                   

consensus_10912#1      ------------------------------------------------------------
consensus_10912#2      ------------------------------------------------------------
consensus_10912#3      ------------------------------------------------------------
consensus_10912#0      AATACCTCAGTTATAGCAGATGAAGTTCTTTCACATAGACTTGGCCTTATTCCACTTGAT 600
consensus_10912#4      ------------------------------------------------------------
                                                                                   

consensus_10912#1      ------------------------------------------------------------
consensus_10912#2      ------------------------------------------------------------
consensus_10912#3      ------------------------------------------------------------
consensus_10912#0      GCAGATCCTAGGCTTTTTGAATATATCTCAGAAAATGATGTCCCAACTGAAAGAAACACT 660
consensus_10912#4      ------------------------------------------------------------
                                                                                   

consensus_10912#1      ------------------------------------------------------------
consensus_10912#2      ------------------------------------------------------------
consensus_10912#3      ------------------------------------------------------------
consensus_10912#0      ATTGTGTACAAACTCCATGTTTCATGTAAAAAGGGTTCCCCACGGCTTACAGTGAAGTCT 720
consensus_10912#4      ------------------------------------------------------------
                                                                                   

consensus_10912#1      --------------------------------------------------------AATC 4
consensus_10912#2      -----------------------------------------GAGACCAAAACTNGANTTC 19
consensus_10912#3      -----------------------------------------------------CGAGCTC 7
consensus_10912#0      GGTGATTTAGAGTGGCTGCCAGAAGGTAGCCAACTACCTTTGGCATCTCCTGCTCAATCT 780
consensus_10912#4      ------------------------------------------------------------
                                                                                   

consensus_10912#1      TGGGNC-CAAACCAAAAGACGTACACTCCCTTCAGCCAAAGCCAGAAGGATTATCTTAGA 63
consensus_10912#2      TTTCAT-TGGGACAAACAAAANAGAAATTCTTCA--CCAAANCAGGAGGANT---TTAGG 73
consensus_10912#3      GTSCANATNTCGCAGAGGTAAWAGAACACTATTTGTGTACANTNCATGTTTTCATGTAAA 67
consensus_10912#0      GGGGAC---AAACAAAAGACGTACACTTCCTTCAGCCAAAGCCAGAAGGATA-TCTTAGA 836
consensus_10912#4      ------------------------------------------------------------
                                                                                   

consensus_10912#1      AAAGCCTCTTGGTNTGAAATTTAAAGACATTACCTATTGCCGAGGCTTGGCCCAGGCCAG 123
consensus_10912#2      AAANC-TCTTGGTGTGAAATT-AAAGACATAA--TATNGC-GAGGCTTGGCC-AGNCCAG 127
consensus_10912#3      AAGGGTTCCCCACGGCTTACAGTGAAGTCTGGTGATTTAGAGTGGCT-GCCAGAAGGTAG 126
consensus_10912#0      AAAGCCTCTTGGTGTGAAATTTAAAGACATAAC-TATTGC-GAGGCTTGGGCCAGGCCAG 894
consensus_10912#4      ------------------CGCTCGGTACAGCAAGCCTTGTGCTAGCTAGCCCCGCCCCAC 42
                                                           *       *** *         * 

consensus_10912#1      GCTATTGAACTTGAGGTACNATGCT-GTTAAGGGAATGGGAAAAGTGCATGCCCAAGTGG 182
consensus_10912#2      GCTATTGAACTTGAG-TAACATGCT-GTTAAGGGAATAGGAAAAGTGCATGCC-AAGTGT 184
consensus_10912#3      CCAACTACCTTTGGCATCTTCTGCTCAATCTGGGGACAAACAAAAGACGTAC-------- 178
consensus_10912#0      GCTATTGAACTTGAGGTA-CATGCT-GTTAAGGGAATAGGAAAAGTGCATGCC-AAGTGG 951
consensus_10912#4      CCCTCCGCCACCGAC------TAGTTGCTGTGGCTGGCGGCAACATGACTTCC------- 89
                        *          *        *  *   *  **        **      * *        

consensus_10912#1      TCCCCAGTTGCTACAGCTTGGTATAGAATGCT-CCCTGAGGTTGGTTCTTCGTGAAGAAA 241
consensus_10912#2      TCCCCAGTTG-TACAGCTTGGTATAGAATGCTTCCCTGAGGTTGTTCTTTCGTGAAGAAA 243
consensus_10912#3      -----ACTTCCTTCAGCCAAAGCCAGAAGGATATCTTAGAAAAGCCTCTTGGTGTGAAAT 233
consensus_10912#0      TCCCCAGTTGCTACAGCTTGGTATAGAATGCT-CCCTGAGGTTG-TTCTTCGTGAAGAAA 1009
consensus_10912#4      -TCTCCTTTACCGGTGCCTCACCTC--AGGCTCTGTTGAGAACA----GGAGGGGTGAGG 142
                              **      **          * * *    *              * *   *  

consensus_10912#1      TCAAAGATGCTGATGCAGAGATGCTAGTGGCAAAGTGCCCAGTCAATGTTTTTGACATCG 301
consensus_10912#2      TCAAAGATGCTGATGCAGAGATGCTAGTGGCAAAGTGCCCAGTCAATGTTTTTGACATCG 303
consensus_10912#3      TTAAAGACATAACTATTGCGAGRCTTGGGCCAG---GCCAGGCTATTGAACTTGAGGTAC 290
consensus_10912#0      TCAAAGATGCTGATGCAGAGATGCTAGTGGCAAAGTGCCCAGTCAATGTTTTTGACATCG 1069
consensus_10912#4      GGGAAGATGCGAAGAAGGGGACG--AATCGAGGAGGGCACGGACGATGAGCCAAGCAGGA 200
                          ****          * **               **   *    **            

consensus_10912#1      AAGACCTGGGAAACGGGGAAAAGAGAGCGGTTGTTGCTAGGCCAAGAGCATGCACCCTTT 361
consensus_10912#2      AAGACCTGGGAAACGGGGAAAAGAGAGCGGTTGTTGCTAGGCCAAGAGCATGCACCCTTT 363
consensus_10912#3      ATD--CTGTTAA--GGGAATAGGAAAGNGCATGCC------------------------- 321
consensus_10912#0      AAGACCTGGGAAACGGGGAAAAGAGAGCGGTTGTTGCTAGGCCAAGAGCATGCACCCTTT 1129
consensus_10912#4      GGA----GAAGAACAAGCTTCCGAGCACCTTCACG------------------------- 231
                              *   *    *     **                                    

consensus_10912#1      GTAGGCAATGCGTTATGGGACCTACTGGGGAAGTTATGGGACCTACTGTAGTTTTT-CAC 420
consensus_10912#2      GTAGGCAATGCGTTATGGGACCTACTGGGGAAGTTATGGGACCTACTGTGGAACAAGTAG 423
consensus_10912#3      ------------------------------------------------------------
consensus_10912#0      GTAGGCAATGCGTTATGGGACCTACTGGGGAAGTTATGGGACCTACTGTGGAACAAGTAG 1189
consensus_10912#4      ------------------------------------------------------------
                                                                                   

consensus_10912#1      GGTTATATTCTGTTGGGAGGGTGTTTGTGCTAAGATTTATCTCCTGACGAAGAGCTGA-G 479
consensus_10912#2      AACTACGGCGTGTCAGAGACCACTTCATCTTTACGATTGAGTC-TACTGGAGCTCTACCG 482
consensus_10912#3      ------------------------------------------------------------
consensus_10912#0      AACTACGGCGTGTCAGAGACCACTTCATCTTTACGATTGAGTC-TACTGGAGCTCTACCG 1248
consensus_10912#4      ------------------------------------------------------------
                                                                                   

consensus_10912#1      TTGGTAATGTTTCTTATAATCTTGTCTACATCAGGCTGCTGTAACAGAAACAAATTAAAG 539
consensus_10912#2      CCGGAGATGCTGTTCACAGAGGC------------------------------------- 505
consensus_10912#3      ------------------------------------------------------------
consensus_10912#0      CCGGAGATGCTGTTCACAGAGGCTGTGAGGATCCTCGAGGAGAAGTGCGAGAGAGTGATA 1308
consensus_10912#4      ------------------------------------------------------------
                                                                                   

consensus_10912#1      CTCGGCATTGGTTTTTAAAAAAAAAAAAAAAAAAAAAAAAA------------------- 580
consensus_10912#2      ------------------------------------------------------------
consensus_10912#3      ------------------------------------------------------------
consensus_10912#0      TCTGGACTGTCATGAGCTCTCTAGTGGTCACTGTAGTTTTTCACGGTTATATTCTGTTGG 1368
consensus_10912#4      ------------------------------------------------------------
                                                                                   

consensus_10912#1      ------------------------------------------------------------
consensus_10912#2      ------------------------------------------------------------
consensus_10912#3      ------------------------------------------------------------
consensus_10912#0      GAGGGTGTTTGTGCTAAGATTTATCTCCTGACGAAGAGCTGAGTTGGTAATGTTTCTTAT 1428
consensus_10912#4      ------------------------------------------------------------
                                                                                   

consensus_10912#1      ------------------------------------------------------------
consensus_10912#2      ------------------------------------------------------------
consensus_10912#3      ------------------------------------------------------------
consensus_10912#0      AATCTTGTCTACATCAGGCTGCTGTAACAGAAACAAATTAAAGCTCGGCATTGGTTTTTT 1488
consensus_10912#4      ------------------------------------------------------------
                                                                                   

consensus_10912#1      ----------------------------------------------------------
consensus_10912#2      ----------------------------------------------------------
consensus_10912#3      ----------------------------------------------------------
consensus_10912#0      GTTGTTCCAGTTTACCATGCACCCTAGTTGCAGTTTACAGTACTTGTTATTCAGGCAC 1546
consensus_10912#4      ----------------------------------------------------------
                                                                                 




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)