These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10914#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1479 fasta sequence [TCGTTGCCTTCTCCGTGCCGAACACCACAGCGCGCGCGCGGGGGGGCGGGTTCGGCTCTCTCGCGAGCTCTGCTCTCTGTCCCTCTCTCTCTCTCGCCGCCTCCTGCCTCGCACACTCGAGATTGGTGGGGTGGATTTGGGGGAGGAGGAGGTGGGGTGGGGTGGGGTGGTTGCTGAGGAGGAGGTGGTGGTGAGAG-ATCGGGCGGCGGGTTGCCGCCGGAGGAGGTAGAGGGATCCTCGGGGGAGGGCGGTTCTTGGGTCGGGGGACCCCCCCATGGCGTGAGGAGAGGGTGCCCTCCGGGAGATCTTGCGGGGCGGGTGTGTGGTGTTGCTAGCTGAGGCTGTTGGGTGGGTACCCCCGAGCGGCCGGGGAATCTCCTCCCTTCTCGAGCGACCGCCCGCGTCGCTCCGCCATGGCCGGCAGCGACGAGGTCAACCGCAACGAGTGCAAGACGGTGGTGCCGCTCCACACATGGGTGCTCATCTCCAACTTCAAGCTGTCGTACAACATTCTGCGGCGGGCGGACGGGACGTTCGAGCGGGACCTCGGGGAGTACCTGGA-CAGGAGGGTGCCGGCGAACGCGCGGCCGCTGGAGGGGGTGTCGTCGTTCGACCACATCATCGACCAGTCGGTGGGGCTGGAGGTGCGCATCTACCGGGCGGCGGCGGAGGGTGACGCGGAGGAGGGGGCGGCGGCGGTGACGCGGCCCATCCTTGAGTTCCTGACGGACGCGCCAGCGGCGGAGCCGTTCCCGGTGATCATATTCTTCCACGGCGGCAGCTTCGTGCACTCGTCGGCCAGCTCGACCATCTACGACAGTCTGTGCCGCCGGTTCGTGAAGCTGAGCAAGGGCGTCGTGGTGTCCGTCAACTACCGGCGCGCGCCGGAGCACCGCTACCCGTGCGCGTACGACGACGGGTGGACCGCGCTCAAGTGGGTCATGTCGCAGCCGTTCATGCGCAGCGGCGGCGACGCGCAGGCCCGCGTGTTCCTCTCCGGCGACAGCTCCGGCGGCAACATCGCCCACCACGTCGCCGTCCGCGCCGCCGACGAGGGCGTCAAGGTCTGCGGCAACATCCTGCTCAACGCCATGTTCGGCGGCACCGAGCGCACGGAGTCGGAGCGGCGGCTCGACGGCAAGTACTTCGTGACGCTCCAGGACAGGGACTGGTACTGGAAGGCGTACCTGCCGGAGGACGCCGACCGGGACCATCCGGCGTGCAACCCGTTCGGCCCGAACGGCCGGCGGCTCGGGGGCCTCCCCTTCGCCAAGAGCCTCATCATCGTGTCGGGCCTGGACCTCACCTGCGACCGGCAGCTCGCCTACGCCGACGCCCTCCGGGAGGACGGCCACCACGTCAAGGTTGTCCAATGCGAGAACGCCACGGTGGGGTTCTACCTGTTGCCCAACACCGTCCACTACCACGAGGTCATGGAGGAGATCTCCGACTTCCTCAACGCTAACCTCTACTACTAGT] [+] EMBL AK074026 [TCGTTGCCTTCTCCGTGCCGAACACCACAGCGCGCGCGCGGGGGGGCGGGTTCGGCTCTCTCGCGAGCTCTGCTCTCTGTCCCTCTCTCTCTCTCGCCGCCTCCTGCCTCGCACACTCGAGATTGGTGGGGTGGATTTGGGGGAGGAGGAGGTGGGGTGGGGTGGGGTGGTTGCTGAGGAGGAGGTGGTGGTGAGAG ATCGGGCGGCGGGTTGCCGCCGGAGGAGGTAGAGGGATCCTCGGGGGAGGGCGGTTCTTGGGTCGGGGGACCCCCCCATGGCGTGAGGAGAGGGTGCCCTCCGGGAGATCTTGCGGGGCGGGTGTGTGGTGTTGCTAGCTGAGGCTGTTGGGTGGGTACCCCCGAGCGGCCGGGGAATCTCCTCCCTTCTCGAGCGACCGCCCGCGTCGCTCCGCCATGGCCGGCAGCGACGAGGTCAACCGCAACGAGTGCAAGACGGTGGTGCCGCTCCACACATGGGTGCTCATCTCCAACTTCAAGCTGTCGTACAACATTCTGCGGCGGGCGGACGGGACGTTCGAGCGGGACCTCGGGGAGTACCTGGA CAGGAGGGTGCCGGCGAACGCGCGGCCGCTGGAGGGGGTGTCGTCGTTCGACCACATCATCGACCAGTCGGTGGGGCTGGAGGTGCGCATCTACCGGGCGGCGGCGGAGGGTGACGCGGAGGAGGGGGCGGCGGCGGTGACGCGGCCCATCCTTGAGTTCCTGACGGACGCGCCAGCGGCGGAGCCGTTCCCGGTGATCATATTCTTCCACGGCGGCAGCTTCGTGCACTCGTCGGCCAGCTCGACCATCTACGACAGTCTGTGCCGCCGGTTCGTGAAGCTGAGCAAGGGCGTCGTGGTGTCCGTCAACTACCGGCGCGCGCCGGAGCACCGCTACCCGTGCGCGTACGACGACGGGTGGACCGCGCTCAAGTGGGTCATGTCGCAGCCGTTCATGCGCAGCGGCGGCGACGCGCAGGCCCGCGTGTTCCTCTCCGGCGACAGCTCCGGCGGCAACATCGCCCACCACGTCGCCGTCCGCGCCGCCGACGAGGGCGTCAAGGTCTGCGGCAACATCCTGCTCAACGCCATGTTCGGCGGCACCGAGCGCACGGAGTCGGAGCGGCGGCTCGACGGCAAGTACTTCGTGACGCTCCAGGACAGGGACTGGTACTGGAAGGCGTACCTGCCGGAGGACGCCGACCGGGACCATCCGGCGTGCAACCCGTTCGGCCCGAACGGCCGGCGGCTCGGGGGCCTCCCCTTCGCCAAGAGCCTCATCATCGTGTCGGGCCTGGACCTCACCTGCGACCGGCAGCTCGCCTACGCCGACGCCCTCCGGGAGGACGGCCACCACGTCAAGGTTGTCCAATGCGAGAACGCCACGGTGGGGTTCTACCTGTTGCCCAACACCGTCCACTACCACGAGGTCATGGAGGAGATCTCCGACTTCCTCAACGCTAACCTCTACTACTAGT] [+] EMBL AU070784 [ GAGATTGGTGGGGTGGATTTGGGGGAGGAGGAGGTGGGGTGGGGTGGGGTGGTTGCTGAGGAGGAGGTGGTGGTGAGAG ATCGGGCGGCGGGTTGCCGCCGGAGGAGGTAGAGGGATCCTCGGGGGAGGGCGGTTCTTGGGTCGGGGGACCCCCCCATGGCGTGAGGAGAGGGTGCCCTCCGGGAGATCTTGCGGGGCGGGTGTGTGGTGTTGCTAGCTGAGGCTGTTGGGTGGGTACCCCCGAGCGGCCGGGGAATCTCCTCCCTTCTCGAGCGACCGCCCGCGTCGCTCCGCCATGGCCGGCAGCGACGAGGTCAACCGCAACGAGTGCAAGACGGTGGTGCCGCTCCACACATGGGTGCTCATCTCCAACTTCAAGCTGTCGTACAACATTCTGCGGCGGGCGGACGGGACGTTCGAGCGGGACCTCGGGGAGTACCTGGA CAGGAGGGTGC ] [+] EMBL AU091999 [ AGGAGGTGGTGGTGAGAGAATCGGGCGGCGGGTTNCCGCCGGAGGAGGTAGAGGGATCCTCGGGGGAGGGCGGTTCTTGGGTCGGGGGACCCCCCCATGGCGTGAGGAGAGGGTGCCCTCCGGGAGATCTTGCGGGGCGGGTGTGTGGTGTTGCTAGCTGAGGCTGTTGGGTGGGTACCCCCGAGCGGCCGGGGAATCTCCTCCCTTCTCGAGCGACCGCCCGCGTCG TCCGCCATGGCCGGCAGCGACGAGGTCAACCGCAACGAGTGCAAGACGGTGGTGCCGCTCCACACATGGGTGCTCATCTCCAACTTCAAGCTGTCGTACAACATTCTGCGGCGGGCGGACGGGACGTTCGAGCGGGACCTCGGGGAGTACCTGGA CAGGAGGGTGCCGGCGA ] [+] EMBL BI798708 [ CGGGGGA GGCGGTTCTT GGTCGGGGGACCCCCCCATGGCGTGAGGAGAGGGTGCCCTCCGGGAGATCTTGCGGGGCGGGTGTGTGGTGTTGCTAGCTGAGGCTGTTGGGTGGGTACCCCCGAGCGGCCGGGGAATCTCCTCCCTTCTCGAGCGACCGCCCGCGTCGCTCCGCCATGGCCGGCAGCGACGAGGTCAACCGCAACGAGTGCAAGACGGTGGTCCCGCTCCACACATGGGTGCTCATCTCCAACTTCAAGCTGTCGTACAACATTCTGCGGC GGCGGACGGGACGTTCGACCGGGACCTCGGGGAGTACCTGGACCAGGA GGTGCCG ] [+] EMBL CB674742 [ TGAGGCTGTTGGGTGGGTACCCCCGAGCGGCCGGGGAATCTCCTCCCTTCTCGAGCGACCGCCCGCGTCGCTCCGCCATGGCCGGCAGCGACGAGGTCAACCGCAACGAGTGCAAGACGGTGGTGCCGCTCCACACATGGGTGCTCATCTCCAACTTCAAGCTGTCGTACAACATTCTGCGGCGGGCGGACGGGACGTTCGAGCGGGACCTCGGGGAGTACCTGGA CAGGAGGGTGCCGGCGAACGCGCGGCCGCTGGAGGGGGTGTCGTCGTTCGACCACATCATCGACCAGTCGGTGGGGCTGGAGGTGCGCATCTACCGGGCGGCGGCGGAGGGTGACGCGGAGGAGGGGGCGGCGGCGGTGACGCGGCCCATCCTTGAGTTCCTGACGGACGCGCCAGCGGCGGAGCCGTTCCCGGTGATCATATTCTTCCACGGCGGCAGCTTCGTGCACTCGTCGGCCAGCTCGACCATCTACGACAGTCTGTGCCGCCGGTTCGTGAAGCTGAGCAAGGGCGTCGTGGTGTCCGTCAACTACCGGCGCGCGCCGGAGCACCGCTACCCGTGCGCGTACGACGACGGGTGGACCGCGCTCAAGTGGGTCATGTCGCAGCCGTTCATGCGCAGCGGCGGCGACGCGCAGGCCCGCGTGTTCCTCTCCGGCGACAGCTCCGGCGGCAACATCGCCCACCACGTCGCCGTCC ] [+] EMBL AU091751 [ TGTCGTCGTTCGACCACATCATCGACCAGTCGGTGGGGCTGGAGGTGCGCATCTACCGGGCGGCGGCGGAGGGTGACGCGGAGNAGGGGGCGGCGGCGGTGACGCGGCCCATCCTTGAGTTCCTGACGGACGCGCCA C GCGGAGCCTTTCCCGGTGATCATATTCTTCCACGGCGGCAGCTTCGTGCACTCGTCGGCCAGCTCGACCATCTACGACAGTCTGTGCCGCCGGTTCGTGAAGCTGAGCAAGGGCGTCGTGGTGTCCGTCAACTACCGGCGCGCGCCGGAGCACCGCTACCCGTGCGCGTACGACGACGGGTGGACCGCGCTCAAGTGGGTCATGTCGCAGCCGTTCATGCGCA CGGCGGCGACGCGCAGGCCCGCGTGTTCCTC ] [+] EMBL AU101435 [ TCGTCGTTCGACCACATCATCGACCAGTCGGTGGGGCTGGAGGTGCGCATCTACCGGGCGGCGGCGGAGGGTGACGCGGAGGAGGGGGCGGCGGCGGTGACGCGGCCCATCCTTGAGTTCCTGACGGACGCGCCA C GCGGAGCNTNTCCCGGTGATCATATTCTTCCACGGCGGCAGCTTCGTGCACTCGTCGGCCAGCTCGACCATCTACGACAGTCTGTGCCGCCGGTTCGTGAAGCTGAGCAAGGGCGTCGTGGTGTCCGTCAACTACCGGCGCGCGCCGGAGCACCGCTACCCGTGCGCGTACGACGACGGGTGGACCGCGCTCAAGTGGG ] consensusID : consensus_10914#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 419 fasta sequence [GGTTGTTTCTTTTTTGTCCGAGCAGGAATCAGCAAAGAAAAACATACGCATATGCACACCGATTGATTGATTGCTCTGGTTTCGCTTCCGCGATTGCGAGATAGTAGTAGTAGTAGAGGGTCGCTCACTGTGGTTGTGGTTGTGGTTGGTTGTGGTGCAGACGGTGGTGCCGCTCCACACATGGGTGCTCATCTCCAACTTCAAGCTGTCGTACAACATTCTGCGGCGGGCGGACGGGACGTTCGAGCGGGACCTCGGGGAGTACCTGGATAGGAGGGTGCCGGCGAACGCGCGGCCGCTGGAGGGGGTGTCGTCGTTCGACCACATCATCGACCAGTCGGTGGGGCTGGAGGTGCGCATCTACCGGGCGGCGGCGGAGGGTGACGCGGAGGAGGGGGCGGCGGCGGTGACGCGGCCCA] [-] EMBL AK111484 [GGTTGTTTCTTTTTTGTCCGAGCAGGAATCAGCAAAGAAAAACATACGCATATGCACACCGATTGATTGATTGCTCTGGTTTCGCTTCCGCGATTGCGAGATAGTAGTAGTAGTAGAGGGTCGCTCACTGTGGTTGTGGTTGTGGTTGGTTGTGGTGCAGACGGTGGTGCCGCTCCACACATGGGTGCTCATCTCCAACTTCAAGCTGTCGTACAACATTCTGCGGCGGGCGGACGGGACGTTCGAGCGGGACCTCGGGGAGTACCTGGATAGGAGGGTGCCGGCGAACGCGCGGCCGCTGGAGGGGGTGTCGTCGTTCGACCACATCATCGACCAGTCGGTGGGGCTGGAGGTGCGCATCTACCGGGCGGCGGCGGAGGGTGACGCGGAGGAGGGGGCGGCGGCGGTGACGCGGCCCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10914#0 TCGTTGCCTTCTCCGTGCCGAACACCACAGCGCGCGCGCGGGGGGGCGGGTTCGGCTCTC 60 consensus_10914#1 ------------------------------------------------------------ consensus_10914#0 TCGCGAGCTCTGCTCTCTGTCCCTCTCTCTCTCTCGCCGCCTCCTGCCTCGCACACTCGA 120 consensus_10914#1 ------------------------------------------------------------ consensus_10914#0 GATTGGTGGGGTGGATTTGGGGGAGGAGGAGGTGGGGTGGGGTGGGGTGGTTGCTGAGGA 180 consensus_10914#1 ------------------------------------------------------------ consensus_10914#0 GGAGGTGGTGGTGAGAGATCGGGCGGCGGGTTGCCGCCGGAGGAGGTAGAGGGATCCTCG 240 consensus_10914#1 ------------------------------------------------------------ consensus_10914#0 GGGGAGGGCGGTTCTTGGGTCGGGGGACCCCCCCATGGCGTGAGGAGAGGGTGCCCTCCG 300 consensus_10914#1 ------------------------GGTTGTTTCTTTTTTGTCCGAGCAGGAATCAGCAAA 36 ** * * ** * *** * consensus_10914#0 GGAGATCTTGCGGGGCGGGTGTGTGGTGTTGCTAGCTGAGGCTGTTGGGTGGGTACCCCC 360 consensus_10914#1 GAAAAACATACG---CATATGCACACCGAT--TGATTGA--TTGCT--CTGGTTTCGCTT 87 * * * * * ** * ** * * * *** ** * *** * * * consensus_10914#0 GAGCGGCCGGGGAATCTCCTCCCTTCTCGAGCGACCGCCCGCGTCGCTCCGCCATGGCCG 420 consensus_10914#1 CCGCGATTGCGAGATAGTAGTAGTAGTAGAGGG----------TCGCTC-ACTGTGGTTG 136 *** * * ** * * *** * ****** * *** * consensus_10914#0 GCAGCGACGAGGTCAACCGCAACGAGTGCAAGACGGTGGTGCCGCTCCACACATGGGTGC 480 consensus_10914#1 ---TGGTTGTGGTTGGTTGTG----GTGCA-GACGGTGGTGCCGCTCCACACATGGGTGC 188 * * *** * ***** ***************************** consensus_10914#0 TCATCTCCAACTTCAAGCTGTCGTACAACATTCTGCGGCGGGCGGACGGGACGTTCGAGC 540 consensus_10914#1 TCATCTCCAACTTCAAGCTGTCGTACAACATTCTGCGGCGGGCGGACGGGACGTTCGAGC 248 ************************************************************ consensus_10914#0 GGGACCTCGGGGAGTACCTGGACAGGAGGGTGCCGGCGAACGCGCGGCCGCTGGAGGGGG 600 consensus_10914#1 GGGACCTCGGGGAGTACCTGGATAGGAGGGTGCCGGCGAACGCGCGGCCGCTGGAGGGGG 308 ********************** ************************************* consensus_10914#0 TGTCGTCGTTCGACCACATCATCGACCAGTCGGTGGGGCTGGAGGTGCGCATCTACCGGG 660 consensus_10914#1 TGTCGTCGTTCGACCACATCATCGACCAGTCGGTGGGGCTGGAGGTGCGCATCTACCGGG 368 ************************************************************ consensus_10914#0 CGGCGGCGGAGGGTGACGCGGAGGAGGGGGCGGCGGCGGTGACGCGGCCCATCCTTGAGT 720 consensus_10914#1 CGGCGGCGGAGGGTGACGCGGAGGAGGGGGCGGCGGCGGTGACGCGGCCCA--------- 419 *************************************************** consensus_10914#0 TCCTGACGGACGCGCCAGCGGCGGAGCCGTTCCCGGTGATCATATTCTTCCACGGCGGCA 780 consensus_10914#1 ------------------------------------------------------------ consensus_10914#0 GCTTCGTGCACTCGTCGGCCAGCTCGACCATCTACGACAGTCTGTGCCGCCGGTTCGTGA 840 consensus_10914#1 ------------------------------------------------------------ consensus_10914#0 AGCTGAGCAAGGGCGTCGTGGTGTCCGTCAACTACCGGCGCGCGCCGGAGCACCGCTACC 900 consensus_10914#1 ------------------------------------------------------------ consensus_10914#0 CGTGCGCGTACGACGACGGGTGGACCGCGCTCAAGTGGGTCATGTCGCAGCCGTTCATGC 960 consensus_10914#1 ------------------------------------------------------------ consensus_10914#0 GCAGCGGCGGCGACGCGCAGGCCCGCGTGTTCCTCTCCGGCGACAGCTCCGGCGGCAACA 1020 consensus_10914#1 ------------------------------------------------------------ consensus_10914#0 TCGCCCACCACGTCGCCGTCCGCGCCGCCGACGAGGGCGTCAAGGTCTGCGGCAACATCC 1080 consensus_10914#1 ------------------------------------------------------------ consensus_10914#0 TGCTCAACGCCATGTTCGGCGGCACCGAGCGCACGGAGTCGGAGCGGCGGCTCGACGGCA 1140 consensus_10914#1 ------------------------------------------------------------ consensus_10914#0 AGTACTTCGTGACGCTCCAGGACAGGGACTGGTACTGGAAGGCGTACCTGCCGGAGGACG 1200 consensus_10914#1 ------------------------------------------------------------ consensus_10914#0 CCGACCGGGACCATCCGGCGTGCAACCCGTTCGGCCCGAACGGCCGGCGGCTCGGGGGCC 1260 consensus_10914#1 ------------------------------------------------------------ consensus_10914#0 TCCCCTTCGCCAAGAGCCTCATCATCGTGTCGGGCCTGGACCTCACCTGCGACCGGCAGC 1320 consensus_10914#1 ------------------------------------------------------------ consensus_10914#0 TCGCCTACGCCGACGCCCTCCGGGAGGACGGCCACCACGTCAAGGTTGTCCAATGCGAGA 1380 consensus_10914#1 ------------------------------------------------------------ consensus_10914#0 ACGCCACGGTGGGGTTCTACCTGTTGCCCAACACCGTCCACTACCACGAGGTCATGGAGG 1440 consensus_10914#1 ------------------------------------------------------------ consensus_10914#0 AGATCTCCGACTTCCTCAACGCTAACCTCTACTACTAGT 1479 consensus_10914#1 --------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||