These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10915#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 895 fasta sequence [ATCACCGCCTCCCTCCTCCCCCTCCCCGCGACTTCCTCCTCCTCCGGCCGCCGCTCCCTCCCGCCGCCGACCACCACCTTCCCGAGACCTCCTCCTCCCCTCCGCCGCCACCGCCACCTCTCCTCCTCCTCCTCCTCCGCGTCGTCCACGGAGAGCGACGGCGGCGGCGGGAGCACGAACGGGTCGCTGCCGGGGCTCCCCCCCGTGGTCGTCGAGGAGGAGGAGGAGGAGTTCTGCCCGGTGGAGTGCGTGACGGAGTTCAAGACGGAGGAGGAGCTGGCCCGCGTCCTGGAGCGCGCCAAGGCGACGGGGGCGCTGGTGGTGGTGGACTTCTTCCGCCCGTCCTGCGGCAGCTGCAAGTACATCGAGCAAGGCTTCATGAAGCTCTGCAAGGGCTCCGGCGA-CCA-CGGCTCCTCCGTCGTCTTCCTCAAGCACAACGTCATCGACGAGTACGACGAGCAGTCAGAGGTGGCAGACCGGCTTCGCATCAAG-GTGGTGCCGCTGTTCCATTTCTACAAGAACGGGGTGCTGCTGGAGGCGTTCGCGACGCGGGACAAGGAGAGGATCATCGCCGCCATCCAGAAGTACACCGCTCCATCGTCGCCGCCTGCTGAATCAGAGGAGCCATCACAGGAGGGATGATTCCACACAGGGTTGAGTTGCGT-GTCATGAT-CTGAA-CT-CAAAGTATTAGCGATCTCA-CTACA-A-CGAAGAAATTGGCA-TTCTATATAGGCCAGTGTATCATTAAATTGTTCAGCACAAAGAGGATGCCGCTATAGTTATAGACTTATAGTTAA-CACTGCTGCATCTTTTGT-GCTACAGCACAATTGTACCATTCCTACGGGGTGTACATTTCCCCCTTAATAATAATAATAAAGAAAAGAAAAACTTAGCTGAA] [+] EMBL AK061487 [ATCACCGCCTCCCTCCTCCCCCTCCCCGCGACTTCCTCCTCCTCCGGCCGCCGCTCCCTCCCGCCGCCGACCACCACCTTCCCGAGACCTCCTCCTCCCCTCCGCCGCCACCGCCACCTCTCCTCCTCCTCCTCCTCCGCGTCGTCCACGGAGAGCGACGGCGGCGGCGGGAGCACGAACGGGTCGCTGCCGGGGCTCCCCCCCGTGGTCGTCGAGGAGGAGGAGGAGGAGTTCTGCCCGGTGGAGTGCGTGACGGAGTTCAAGACGGAGGAGGAGCTGGCCCGCGTCCTGGAGCGCGCCAAGGCGACGGGGGCGCTGGTGGTGGTGGACTTCTTCCGCCCGTCCTGCGGCAGCTGCAAGTACATCGAGCAAGGCTTCATGAAGCTCTGCAAGGGCTCCGGCGA CCA CGGCTCCTCCGTCGTCTTCCTCAAGCACAACGTCATCGACGAGTACGACGAGCAGTCAGAGGTGGCAGACCGGCTTCGCATCAAG GTGGTGCCGCTGTTCCATTTCTACAAGAACGGGGTGCTGCTGGAGGCGTTCGCGACGCGGGACAAGGAGAGGATCATCGCCGCCATCCAGAAGTACACCGCTCCATCGTCGCCGCCTGCTGAATCAGAGGAGCCATCACAGGAGGGATGATTCCACACAGGGTTGAGTTGCGT GTCATGAT CTGAA CT CAAAGTATTAGCGATCTCA CTACA A CGAAGAAATTGGCA TTCTATATAGGCCAGTGTATCATTAAATTGTTCAGCACAAAGAGGATGCCGCTATAGTTATAGACTTATAGTTAA CACTGCTGCATCTTTTGT GCTACAGCACAATTGTACCATTCCTACGGGGTGTACATTTCCCCCTTAATAATAATAA ] [+] EMBL AK066393 [ CGCCTCCCTCCTCCCCCTCCCCGCGACTTCCTCCTCCTCCGGCCGCCGCTCCCTCCCGCCGCCGACCACCACCTTCCCGAGACCTCCTCCTCCCCTCCGCCGCCACCGCCACCTCTCCTCCTCCTCCTCCTCCGCGTCGTCCACGGAGAGCGACGGCGGCGGCGGGAGCACGAACGGGTCGCTGCCGGGGCTCCCCCCCGTGGTCGTCGAGGAGGAGGAGGAGGAGTTCTGCCCGGTGGAGTGCGTGACGGAGTTCAAGACGGAGGAGGAGCTGGCCCGCGTCCTGGAGCGCGCCAAGGCGACGGGGGCGCTGGTGGTGGTGGACTTCTTCCGCCCGTCCTGCGGCAGCTGCAAGTACATCGAGCAAGGCTTCATGAAGCTCTGCAAGGGCTCCGGCGA CCA CGGCTCCTCCGTCGTCTTCCTCAAGCACAACGTCATCGACGAGTACGACGAGCAGTCAGAGGTGGCAGACCGGCTTCGCATCAAG GTGGTGCCGCTGTTCCATTTCTACAAGAACGGGGTGCTGCTGGAGGCGTTCGCGACGCGGGACAAGGAGAGGATCATCGCCGCCATCCAGAAGTACACCGCTCCATCGTCGCCGCCTGCTGAATCAGAGGAGCCATCACAGGAGGGATGATTCCACACAGGGTTGAGTTGCGT GTCATGAT CTGAA CT CAAAGTATTAGCGATCTCA CTACA A CGAAGAAATTGGCA TTCTATATAGGCCAGTGTATCATTAAATTGTTCAGCACAAAGAGGATGCCGCTATAGTTATAGACTTATAGTTAA CACTGCTGCATCTTTTGT GCTACAGCACAATTGTACCATTCCTACGGGGTGTACATTTCCCCCTTAATAATAATAATAAAGAAAAGAAA ] [+] EMBL CB685830 [ CTCCCTCCTCCCCCTCCCCGCGACTTCCTCCTCCTCCGGCCGCCGCTCCCTCCCGCCGCCGACCACCACCTTCCCGAGACCTCCTCCTCCCCTCCGCCGCCACCGCCACCTCTCCTCCTCCTCCTCCTCCGCGTCGTCCACGGAGAGCGACGGCGGCGGCGGGAGCACGAACGGGTCGCTGCCGGGGCTCCCCCCCGTGGTCGTCGAGGAGGAGGAGGAGGAGTTCTGCCCGGTGGAGTGCGTGACGGAGTTCAAGACGGAGGAGGAGCTGGCCCGCGTCCTGGAGCGCGCCAAGGCGACGGGGGCGCTGGTGGTGGTGGACTTCTTCCGCCCGTCCTGCGGCAGCTGCAAGTACATCGAGCAAGGCTTCATGAAGCTCTGCAAGGGCTCCGGCGA CCA CGGCTCCTCCGTCGTCTTCCTCAAGCACAACGTCATCGACGAGTACGACGAGCAGTCAGAGGTGGCAGACCGGCTTCGCATCAAG GTGGTGCCGCTGTTCCATTTCTACAAGAACGGGGTGCTGCTGGAGGCGTTCGCGACGCGGGACAAGGAGAGGATCATCGCCGCCATCCAGAAGTACACCGCTCCATCGTCGCCGCCTGCTGAATCAGAGGAGCCATCACAGGAGGGATGATTCCACACAGGGTTGAGTTGCGT GTCATGAT CTGAA CT CAAAGTATTAGCGATCTCA CTACA A CGAAGAAATTGGCA TTCTATATAGGCCAGTGTATCATTAAATTGTTCAGCACAAAGAGGATGCCGCTATAGTTATAGACTTATAGTTAA CACTGCTGCATCTTTTGT GCTACAGCACAATTGTACCATTCCTACGGGGTGTACATTTCCCCCTTAA ] [-] EMBL CB685831 [ GGCGGCGGCGGGAGCACGAACGGGTCGCTGCCGGGGCTCCCCCCCGTGGTCGTCGAGGAGGAGGAGGAGGAGTTCTGCCCGGTGGAGTGCGTGACGGAGTTCAAGACGGAGGAGGAGCTGGCCCGCGTCCTGGAGCGCGCCAAGGCGACGGGGGCGCTGGTGGTGGTGGACTTCTTCCGCCCGTCCTGCGGCAGCTGCAAGTACATCGAGCAAGGCTTCATGAAGCTCTGCAAGGGCTCCGGCGA CCA CGGCTCCTCCGTCGTCTTCCTCAAGCACAACGTCATCGACGAGTACGACGAGCAGTCAGAGGTGGCAGACCGGCTTCGCATCAAG GTGGTGCCGCTGTTCCATTTCTACAAGAACGGGGTGCTGCTGGAGGCGTTCGCGACGCGGGACAAGGAGAGGATCATCGCCGCCATCCAGAAGTACACCGCTCCATCGTCGCCGCCTGCTGAATCAGAGGAGCCATCACAGGAGGGATGATTCCACACAGGGTTGAGTTGCGT GTCATGAT CTGAA CT CAAAGTATTAGCGATCTCA CTACA A CGAAGAAATTGGCA TTCTATATAGGCCAGTGTATCATTAAATTGTTCAGCACAAAGAGGATGCCGCTATAGTTATAGACTTATAGTTAA CACTGCTGCATCTTTTGT GCTACAGCACAATTGTACCATTCCTACGGGGTGTACATTTCCCCCTTAATAATAATAATAAAGAAAAGAAAAACTTAGCTG ] [+] EMBL CB681612 [ GCCAACGTGACGGGGGCGCTGGTGGTGGTGGACTTCTTCCGCCCGTCCTGCGGCAGCTGCAAGTACATCGAGCAAGGCTTCATGAAGCTCTGCAAGGGCTCCGGCGA CCA CGGCTCCTCCGTCGTCTTCCTCAAGCACAACGTCATCGACGAGTACGACGAGCAGTCAGAGGTGGCAGACCGGCTTCGCATCAAG GTGGTGCCGCTGTTCCATTTCTACAAGAACGGGGTGCTGCTGGAGGCGTTCGCGACGCGGGACAAGGAGAGGATCATCGCCGCCATCCAGAAGTACACCGCTCCATCGTCGCCGCCTGCTGAATCAGAGGAGCCATCACAGGAGGGATGATTCCACACAGGGTTGAGTTGCGT GTCATGAT CTGAA CT CAAAGTATTAGCGATCTCA CTACA A CGAAGAAATTGGCA TTCTATATAGGCCAGTGTATCATTAAATTGTTCAGCACAAAGAGGATGCCGCTATAGTTATAGACTTATAGTTAA CACTGCTGCATCTTTTGT GCTACAGCACAATTGTACCATTCCTACGGGGTGTACATTTCCCCCTTAATAATAATAATAAAGAAAAGAAAAACT ] [+] EMBL BI799381 [ CCGGCGACCCACCGGCTCCCCCGTCGTCTTCCTCAAGCACAACGTCATCGACGAGTACGACGAGCAGTCAGAGGTGGCAGACCGGCTTCGCATCAAGCGTGGTGCCGCTGTTCCATTTCTACAAGAACGGGGTGCTGCTGGAGGCGTTCGCGACGCGGGACAAGGAGAGGATCATCGCCGCCATCCAGAAGTACACCGCTCCATCGTCGCCGCCTGCTGAATCAGAGGAGCCATCACAGGAGGGATGATTCCACACAGGGTTGAGTTGCGTCGTCATGATCCTGAACCTCCAAAGTATTAGCGATCTCAGCTACACAGCGAAGAAATTGGCACTTCTATATAGGCCAGTGTATCATTAAATTGTTCAGCACCAAGAGGATCCCGCTATAGTTATAGACTTATAGTTAACCCCTGCTGCATCTTTTGTCGCTACAGCACAATTGTACCATTCCTACGGGGTGTACATTTCCCCCTTAATAATAATAATAAAGAAAAGAAAAACTTAaaaaaa] consensusID : consensus_10915#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 795 fasta sequence [TGCTCCTCCGGCCGCCGCTCCCTCCCGCCGCCGACCACCACCTTCCCGAGACCTCCTCCTCCCCTCCGCCGCCACCGCCACCTCTCCTCCTCCTCCTCCTCCGCGTCGTCCACGGAGAGCGACGGCGGCGGCGGGAGCACGAACGGGTCGCTGCCGGGGCTCACCCCCGTGGTCGTCGAGGAGGAGGAGGAGGAGTTCTGCCCGGTGGAGTGCGTGACGGAGTTCAAGACGGAGGAGGAGCTGGCCCGCGTCCTGGAGCGCGCCAAGGCGACGGGGGCGCTGGTGGTGGTGGACTTCTTCCGCCCGTCCTGCGGCAGCTGCAAGTACATCGAGCAAGGCTTCATGAAGCTCTGCAAGGGCTCCGGCGACCACGGCTCCCCCGTCGTCTTCCTCAAGCACAACGTCATCGACGAGTACGACGAGCAAGCAGAGGTGGCAGACCGGCTTCGCATCAAGGTGGTGCCGCTGTTCCATTTCTACAAGAACGGGGTGCTGCTGGAGGCGTTCGCGACGCGGGACAAGGAGAGGATCATCGNCGCCATCCAGAAGTACACCGCTCCATCGTCGCCCGCTGCTGAATCAGAGGAGCCATGACAGGAGGGATGATTCCACACAGGGTTGAGGTGCGTGTCATGATCTGAACTCAAAGTATTAGCGATCTCACTACAACGAAGAAATTGGCATTCTATATAGGAGAGAGGATCATTAAATTGGTCAGCACAAAGAGGATGCCGTTTAGTTGAGGACTAGTAGTAACACTGATGGATTTTTGGGAGCAGACAACGGGNCCTTCTA] [+] EMBL BE040666 [TGCTCCTCCGGCCGCCGCTCCCTCCCGCCGCCGACCACCACCTTCCCGAGACCTCCTCCTCCCCTCCGCCGCCACCGCCACCTCTCCTCCTCCTCCTCCTCCGCGTCGTCCACGGAGAGCGACGGCGGCGGCGGGAGCACGAACGGGTCGCTGCCGGGGCTCACCCCCGTGGTCGTCGAGGAGGAGGAGGAGGAGTTCTGCCCGGTGGAGTGCGTGACGGAGTTCAAGACGGAGGAGGAGCTGGCCCGCGTCCTGGAGCGCGCCAAGGCGACGGGGGCGCTGGTGGTGGTGGACTTCTTCCGCCCGTCCTGCGGCAGCTGCAAGTACATCGAGCAAGGCTTCATGAAGCTCTGCAAGGGCTCCGGCGACCACGGCTCCCCCGTCGTCTTCCTCAAGCACAACGTCATCGACGAGTACGACGAGCAAGCAGAGGTGGCAGACCGGCTTCGCATCAAGGTGGTGCCGCTGTTCCATTTCTACAAGAACGGGGTGCTGCTGGAGGCGTTCGCGACGCGGGACAAGGAGAGGATCATCGNCGCCATCCAGAAGTACACCGCTCCATCGTCGCCCGCTGCTGAATCAGAGGAGCCATGACAGGAGGGATGATTCCACACAGGGTTGAGGTGCGTGTCATGATCTGAACTCAAAGTATTAGCGATCTCACTACAACGAAGAAATTGGCATTCTATATAGGAGAGAGGATCATTAAATTGGTCAGCACAAAGAGGATGCCGTTTAGTTGAGGACTAGTAGTAACACTGATGGATTTTTGGGAGCAGACAACGGGNCCTTCTA] consensusID : consensus_10915#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 345 fasta sequence [GGAGGAGGAGGAGCTGGCCCGCGTCCTGGAGCGCGCCAAGGCGACGGGGGCGCTGGTGGTGGTGGACTTCTTCCGCCCGTCCTGCGGCAGCTGCAAGTACATCGAGCAAGGCTTCATGAAGCTCTGCAAGGGCTCCGGCGACCACGGCTCCCCCGTCGTCTTCCTCAAGCACAACGTCATCGACGAGTACGACGAGCAGTCAGAGGTGGCAGACCGGCTTCGCATCAAGGTGGTGCCGCTGTTCCATTTCTACNAGAACGGGGTGCTGCTGGANNCGTTCGCGACGCGGGACAAGGNNAGGATCATCGCCGCCATCNAGNNNTACACCGCNNNATCNNNGNNGCC] [+] EMBL CF197396 [GGAGGAGGAGGAGCTGGCCCGCGTCCTGGAGCGCGCCAAGGCGACGGGGGCGCTGGTGGTGGTGGACTTCTTCCGCCCGTCCTGCGGCAGCTGCAAGTACATCGAGCAAGGCTTCATGAAGCTCTGCAAGGGCTCCGGCGACCACGGCTCCCCCGTCGTCTTCCTCAAGCACAACGTCATCGACGAGTACGACGAGCAGTCAGAGGTGGCAGACCGGCTTCGCATCAAGGTGGTGCCGCTGTTCCATTTCTACNAGAACGGGGTGCTGCTGGANNCGTTCGCGACGCGGGACAAGGNNAGGATCATCGCCGCCATCNAGNNNTACACCGCNNNATCNNNGNNGCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10915#0 ATCACCGCCTCCCTCCTCCCCCTCCCCGCGACTTCCTCCTCCTCCGGCCGCCGCTCCCTC 60 consensus_10915#1 ------------------------------------TGCTCCTCCGGCCGCCGCTCCCTC 24 consensus_10915#2 ------------------------------------------------------------ consensus_10915#0 CCGCCGCCGACCACCACCTTCCCGAGACCTCCTCCTCCCCTCCGCCGCCACCGCCACCTC 120 consensus_10915#1 CCGCCGCCGACCACCACCTTCCCGAGACCTCCTCCTCCCCTCCGCCGCCACCGCCACCTC 84 consensus_10915#2 ------------------------------------------------------------ consensus_10915#0 TCCTCCTCCTCCTCCTCCGCGTCGTCCACGGAGAGCGACGGCGGCGGCGGGAGCACGAAC 180 consensus_10915#1 TCCTCCTCCTCCTCCTCCGCGTCGTCCACGGAGAGCGACGGCGGCGGCGGGAGCACGAAC 144 consensus_10915#2 ------------------------------------------------------------ consensus_10915#0 GGGTCGCTGCCGGGGCTCCCCCCCGTGGTCGTCGAGGAGGAGGAGGAGGAGTTCTGCCCG 240 consensus_10915#1 GGGTCGCTGCCGGGGCTCACCCCCGTGGTCGTCGAGGAGGAGGAGGAGGAGTTCTGCCCG 204 consensus_10915#2 ------------------------------------------------------------ consensus_10915#0 GTGGAGTGCGTGACGGAGTTCAAGACGGAGGAGGAGCTGGCCCGCGTCCTGGAGCGCGCC 300 consensus_10915#1 GTGGAGTGCGTGACGGAGTTCAAGACGGAGGAGGAGCTGGCCCGCGTCCTGGAGCGCGCC 264 consensus_10915#2 -----------------------GGAGGAGGAGGAGCTGGCCCGCGTCCTGGAGCGCGCC 37 * ********************************** consensus_10915#0 AAGGCGACGGGGGCGCTGGTGGTGGTGGACTTCTTCCGCCCGTCCTGCGGCAGCTGCAAG 360 consensus_10915#1 AAGGCGACGGGGGCGCTGGTGGTGGTGGACTTCTTCCGCCCGTCCTGCGGCAGCTGCAAG 324 consensus_10915#2 AAGGCGACGGGGGCGCTGGTGGTGGTGGACTTCTTCCGCCCGTCCTGCGGCAGCTGCAAG 97 ************************************************************ consensus_10915#0 TACATCGAGCAAGGCTTCATGAAGCTCTGCAAGGGCTCCGGCGACCACGGCTCCTCCGTC 420 consensus_10915#1 TACATCGAGCAAGGCTTCATGAAGCTCTGCAAGGGCTCCGGCGACCACGGCTCCCCCGTC 384 consensus_10915#2 TACATCGAGCAAGGCTTCATGAAGCTCTGCAAGGGCTCCGGCGACCACGGCTCCCCCGTC 157 ****************************************************** ***** consensus_10915#0 GTCTTCCTCAAGCACAACGTCATCGACGAGTACGACGAGCAGTCAGAGGTGGCAGACCGG 480 consensus_10915#1 GTCTTCCTCAAGCACAACGTCATCGACGAGTACGACGAGCAAGCAGAGGTGGCAGACCGG 444 consensus_10915#2 GTCTTCCTCAAGCACAACGTCATCGACGAGTACGACGAGCAGTCAGAGGTGGCAGACCGG 217 ***************************************** ***************** consensus_10915#0 CTTCGCATCAAGGTGGTGCCGCTGTTCCATTTCTACAAGAACGGGGTGCTGCTGGAGGCG 540 consensus_10915#1 CTTCGCATCAAGGTGGTGCCGCTGTTCCATTTCTACAAGAACGGGGTGCTGCTGGAGGCG 504 consensus_10915#2 CTTCGCATCAAGGTGGTGCCGCTGTTCCATTTCTACNAGAACGGGGTGCTGCTGGANNCG 277 ************************************ ******************* ** consensus_10915#0 TTCGCGACGCGGGACAAGGAGAGGATCATCGCCGCCATCCAGAAGTACACCGCTCCATCG 600 consensus_10915#1 TTCGCGACGCGGGACAAGGAGAGGATCATCGNCGCCATCCAGAAGTACACCGCTCCATCG 564 consensus_10915#2 TTCGCGACGCGGGACAAGGNNAGGATCATCGCCGCCATCNAGNNNTACACCGCNNNATCN 337 ******************* ********** ******* ** ******** *** consensus_10915#0 TCGCCGCCTGCTGAATCAGAGGAGCCATCACAGGAGGGATGATTCCACACAGGGTTGAGT 660 consensus_10915#1 TCGCCCGCTGCTGAATCAGAGGAGCCATGACAGGAGGGATGATTCCACACAGGGTTGAGG 624 consensus_10915#2 NNGNNGCC---------------------------------------------------- 345 * * consensus_10915#0 TGCGTGTCATGATCTGAACTCAAAGTATTAGCGATCTCACTACAACGAAGAAATTGGCAT 720 consensus_10915#1 TGCGTGTCATGATCTGAACTCAAAGTATTAGCGATCTCACTACAACGAAGAAATTGGCAT 684 consensus_10915#2 ------------------------------------------------------------ consensus_10915#0 TCTATATAGGCCAGTGTATCATTAAATTGTTCAGCACAAAGAGGATGCCGCTATAGTTAT 780 consensus_10915#1 TCTATATAGGAGAGAGGATCATTAAATTGGTCAGCACAAAGAGGATGCCGTT-TAGTTGA 743 consensus_10915#2 ------------------------------------------------------------ consensus_10915#0 AGACTTATAGTTAACACTGCTGCATCTTTTGTGCTACAGCACAATTGTACCATTCCTACG 840 consensus_10915#1 GGACTAGTAGT-AACACTGATGGATTTTTGGGA--GCAG-ACAACGGGNCC--TTCTA-- 795 consensus_10915#2 ------------------------------------------------------------ consensus_10915#0 GGGTGTACATTTCCCCCTTAATAATAATAATAAAGAAAAGAAAAACTTAGCTGAA 895 consensus_10915#1 ------------------------------------------------------- consensus_10915#2 ------------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||