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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10931#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1384 fasta sequence
[GTCCTAACCAACAGTCAGGAACAGCAACAAAAGTAAGCCAAGAATCTCTCTGCCTCCCACCAACAACCACACACACTCACAGCTTTGGTCATGGAGGTCACCCCCAACCACACGCAGACCGTCTCCGGCTGGGCCGCCATGGACGAGTCCGGCAAGATCGTGCCCTTCGTCTTCAAGAGAAGGGAGAACGGGGTGGACGACGTGACGATCAAGGTGAAGTACTGCGGGATGTGCCACACGGACCTGCACTTCATCCACAACGACTGGGGGATCACCATGTACCCGGTGGTGCCGGGGCACGAGATCACCGGCGTGGTGACCAAGGTGGGCACCAACGTGGCCGGGTTCAAGGTGGGCGACCGCGTGGGCGTGGGGTGCATCGCGGCGTCGTGCCTCGACTGCGAGCACTGCCGGCGGTCGGAGGAGAACTACTGCGACAAGGTGGCGCTCACCTACAACGGCATCTTCTGGGACGGCAGCATCACCTACGGCGGCTACTCCGGCATGCTGGTGGCGCACAAGCGGTTCGTCGTGCGGATCCCGGACACCCTCCCGCTGGACGCCGCGGCGCCGCTGCTGTGCGCGGGCATCACGGTGTACAGCCCCATGAAGCAGCACGGCATGCTGCAGGCCGACGCGGCCGGCCGGCGGCTCGGCGTGGTCGGCCTCGGCGGCCTCGGCCACGTCGCCGTCAAGTTCGGCAAGGCGTTCGGCCTCCACGTCACCGTCATCAGCACGTCTCCGGCCAAGGAGCGCGAGGCCAGGGAGAACCTCAAGGCCGACAACTTCGTCGTCAGCACCGACCAGAAGCAGATGCAGGCTATGACGAGGAGCCTTGACTACATCATTGACACGGTCGCGGCGACGCACTCTCTGGGTCCGATCCTGGAGCTGCTCAAGGTCAACGGCAAGCTGGTGCTCGTGGGCGCGCCGGAGAAGCCCGTCGAGCTCCCTTCCTTCCCTC-TC-ATCTTCGGTAAGAGGA-CGGTGAGT--GGGAGCA-TGACGG-GTGGGATG-AAGGAGACG-CAGGAGATGATGGACA-TTTGCGGGGAGCACAACATCACCTGC-GACAT-CGAGATCGTGTCCACGGACAGGATCAACGATGCGCTCGCCAGGTTGGCG-CGCAACG-ACGTCCGCTACCGCTTCGTCATCAACGTT-GGGGGCGACTC-CAAGCTCTAGACTCATGCTACTATCATATTGCTACCTAGTACCAACCTCCATGCCTTTCTTAATTTAATTTATTGGAGGCTCTGCACGCAGAATGGGACAGTTCGAGCTGTCGTTTTCTCGTTGGCCACGTGAAGTAACTGTACGCACTTTGTACTTATTCGAGAAATGATCAGTGATAAATCATCAATGGCCTTATTTTATTCTTAAAAAAAAAAAAAAA]
[+] EMBL AK071484 [GTCCTAACCAACAGTCAGGAACAGCAACAAAAGTAAGCCAAGAATCTCTCTGCCTCCCACCAACAACCACACACACTCACAGCTTTGGTCATGGAGGTCACCCCCAACCACACGCAGACCGTCTCCGGCTGGGCCGCCATGGACGAGTCCGGCAAGATCGTGCCCTTCGTCTTCAAGAGAAGGGAGAACGGGGTGGACGACGTGACGATCAAGGTGAAGTACTGCGGGATGTGCCACACGGACCTGCACTTCATCCACAACGACTGGGGGATCACCATGTACCCGGTGGTGCCGGGGCACGAGATCACCGGCGTGGTGACCAAGGTGGGCACCAACGTGGCCGGGTTCAAGGTGGGCGACCGCGTGGGCGTGGGGTGCATCGCGGCGTCGTGCCTCGACTGCGAGCACTGCCGGCGGTCGGAGGAGAACTACTGCGACAAGGTGGCGCTCACCTACAACGGCATCTTCTGGGACGGCAGCATCACCTACGGCGGCTACTCCGGCATGCTGGTGGCGCACAAGCGGTTCGTCGTGCGGATCCCGGACACCCTCCCGCTGGACGCCGCGGCGCCGCTGCTGTGCGCGGGCATCACGGTGTACAGCCCCATGAAGCAGCACGGCATGCTGCAGGCCGACGCGGCCGGCCGGCGGCTCGGCGTGGTCGGCCTCGGCGGCCTCGGCCACGTCGCCGTCAAGTTCGGCAAGGCGTTCGGCCTCCACGTCACCGTCATCAGCACGTCTCCGGCCAAGGAGCGCGAGGCCAGGGAGAACCTCAAGGCCGACAACTTCGTCGTCAGCACCGACCAGAAGCAGATGCAGGCTATGACGAGGAGCCTTGACTACATCATTGACACGGTCGCGGCGACGCACTCTCTGGGTCCGATCCTGGAGCTGCTCAAGGTCAACGGCAAGCTGGTGCTCGTGGGCGCGCCGGAGAAGCCCGTCGAGCTCCCTTCCTTCCCTC TC ATCTTCGGTAAGAGGA CGGTGAGT GGGAGCA TGACGG GTGGGATG AAGGAGACG CAGGAGATGATGGACA TTTGCGGGGAGCACAACATCACCTGC GACAT CGAGATCGTGTCCACGGACAGGATCAACGATGCGCTCGCCAGGTTGGCG CGCAACG ACGTCCGCTACCGCTTCGTCATCAACGTT GGGGGCGACTC CAAGCTCTAGACTCATGCTACTATCATATTGCTACCTAGTACCAACCTCCATGCCTTTCTTAATTTAATTTATTGGAGGCTCTGCACGCAGAATGGGACAGTTCGAGCTGTCGTTTTCTCGTTGGCCACGTGAAGTAACTGTACGCACTTTGTACTTATTCGAGAAATGATCAGTGATAAATCATCAATGGCCTTA ]
[+] EMBL AK099270 [ CTAACCAACAGTCAGGAACAGCAACAAAAGTAAGCCAAGAATCTCTCTGCCTCCCACCAACAACCACACACACTCACAGCTTTGGTCATGGAGGTCACCCCCAACCACACGCAGACCGTCTCCGGCTGGGCCGCCATGGACGAGTCCGGCAAGATCGTGCCCTTCGTCTTCAAGAGAAGGGAGAACGGGGTGGACGACGTGACGATCAAGGTGAAGTACTGCGGGATGTGCCACACGGACCTGCACTTCATCCACAACGACTGGGGGATCACCATGTACCCGGTGGTGCCGGGGCACGAGATCACCGGCGTGGTGACCAAGGTGGGCACCAACGTGGCCGGGTTCAAGGTGGGCGACCGCGTGGGCGTGGGGTGCATCGCGGCGTCGTGCCTCGACTGCGAGCACTGCCGGCGGTCGGAGGAGAACTACTGCGACAAGGTGGCGCTCACCTACAACGGCATCTTCTGGGACGGCAGCATCACCTACGGCGGCTACTCCGGCATGCTGGTGGCGCACAAGCGGTTCGTCGTGCGGATCCCGGACACCCTCCCGCTGGACGCCGCGGCGCCGCTGCTGTGCGCGGGCATCACGGTGTACAGCCCCATGAAGCAGCACGGCATGCTGCAGGCCGACGCGGCCGGCCGGCGGCTCGGCGTGGTCGGCCTCGGCGGCCTCGGCCACGTCGCCGTCAAGTTCGGCAAGGCGTTCGGCCTCCACGTCACCGTCATCAGCACGTCTCCGGCCAAGGAGCGCGAGGCCAGGGAGAACCTCAAGGCCGACAACTTCGTCGTCAGCACCGACCAGAAGCAGATGCAGGCTATGACGAGGAGCCTTGACTACATCATTGACACGGTCGCGGCGACGCACTCTCTGGGTCCGATCCTGGAGCTGCTCAAGGTCAACGGCAAGCTGGTGCTCGTGGGCGCGCCGGAGAAGCCCGTCGAGCTCCCTTCCTTCCCTC TC ATCTTCGGTAAGAGGA CGGTGAGT GGGAGCA TGACGG GTGGGATG AAGGAGACG CAGGAGATGATGGACA TTTGCGGGGAGCACAACATCACCTGC GACAT CGAGATCGTGTCCACGGACAGGATCAACGATGCGCTCGCCAGGTTGGCG CGCAACG ACGTCCGCTACCGCTTCGTCATCAACGTT GGGGGCGACTC CAAGCTCTAGACTCATGCTACTATCATATTGCTACCTAGTACCAACCTCCATGCCTTTCTTAATTTAATTTATTGGAGGCTCTGCACGCAGAATGGGACAGTTCGAGCTGTCGTTTTCTCGTTGGCCACGTGAAGTAACTGTACGCACTTTGTACTTATTCGAGAAATGATCAGTG ]
[+] EMBL AU062517 [ ACAGCAACAAAAGTAAGCCAAGAATCTCTCTGCCTCCCACCAACAACCACACACACTCACAGCTTTGGTCATGGAGGTCACCCCCAACCACACGCAGACCGTCTCCGGCTGGGCCGCCATGGACGAGTCCGGCAAGATCGTGCCCTTCGTCTTCAAGAGAAGGGAGAACGGGGTGGACGACGTGACGATCAAGGTGAAGTACTGCGGGATGTGCCACACGGACCTGCACTTCATCCACAACGACTGGGGGATCACCATGTACCCGGTGGTGCCGGGGCACGAGATCACCGGCGTGGTGACCAAGGTGGGCANCAACGTGGCCGGGTTCAAG ]
[-] EMBL CA759729 [ caGAGGGCGA CAAGGGGGAACCTCAAGGCCGACAAATTTGTTGTCAGCACCGACCAGAAGCAGATGCGGGCTATGACGAGGAGCCTTGACTACATCATTGACACGGTCGGGGCGACGCACTCTCTGGGTCCGATCCTGGAGCTGCTCAAGGTCAACGGCAAACTGGTGCTCGTGGGCGCGCCGGAGAAGCCCGTCGAGCTCCCTTCCTTCCCTC TC ATTTTCGGTAAGAGGA CGGTGAGT GGGAGCA TGACGG GTGGGATG AAGGAGCCG CAGGAGATGATGGACA TTTGCGGGGAGCACAACATCACCTGC GACAT CGAGATCGTGTCCACGGACAGGATCAACGATGCGCTCGCCAGGTTGGCG CGCAACG ACGTCCGCTACCGGTTTGTCATAAACGTT GGGGGCGACTC CAAGCTCTAGATTCATGCTACTATCATATTGCTACCTAGTACCAACCTCCATGCCTTTCTTAATTTAATTTATTGGAGGCTCTGCACGCAGAATGGGACAGTTCGAGCTGTCGTTTTTTCGTTGGCCACGTGAAGTAACTGTACGCACTTTGTACTTATTCGAGAAATGATCAGTGATAAATCATCAATGGCCTTATTTTATTCTTAAAAAAAAAAAAAAA]
[+] EMBL AU166356 [ tnCCTTCCCTCTTCAATCTT GGTAAGAGGA CGGTGAGT GGGAGCA TGACGG GTGGGATG AAGGAGACG CAGGAGATGATGGACA TTTGCGGGGAGCACAACATCACCTGC GACAT CGAGATCGTGTCCACGGACAGGATCAACGATGCGCTCGCCAGGTTGGCG CGCAACG ACGTCCGCTACCGCTTCGTCATCAACGTT GGGGGCGACTC CAAGCTCTAGACTCATGCTACTATCATATTGCTACCTAGTACCAACCTCCATGCCTTTCTTAATTTAATTTATTGGAGGCTCTGCACGCAGAATGGGACAGTTCGAGCTGTCGTTTTCTCGTTGGCCACGTGAAGTAACTGTACGCACTTTGTACTTATTCGAGAAATGATCAGTGATAAATCATCAATGGCCTTATTTTATTCTTAAAAAAAAAAAAA ]
[+] EMBL AA752451 [ cgagCTC TC ATCTTCGGTAAGAGGA CGGTGAGT GGGAGCA TGACGG GTGGGATG AAGGAGACG CAGGAGATGATGGACA TTTGCGGGGAGCACAACATCACCTGC GACAT CGAGATCGTGTCCACGGACAGGATCAACGATGCNCNCNMCAGGTTGGTGACTMAACGAACGTCCGCTACCGCTTCGTCATCAACGTTGGGGGGCGACTC CAAGCTCTAGACTCATGCTACTATCATATTGCTACCTAGTACCAACCT ]
[+] EMBL BI808470 [ AAGAGGATCGTTGATTTGGGGAGCACTGACGGTGTGGGATGAAAGGAGACGCCAGGAGATGATGGACATTTTGCGGGGAGCACAACATCACCTGCGGACATCCGAGATCGTGTCCACGGACAGGATCAACGATGCGCTCGCCAGGTTGGCG CGCAACG ACGTCCGCTACCGCTTCGTCATCAACGTT GGGGGCGACTCACAAGCTCTAGATTCATGCTACTATCATATTGCTACCTAGTACCAACCTCCATGCCTTTCTTAATTTAATTTATTGGAGGCTCTGCACGCAGAATGGGACAGTTCGA ]
consensusID : consensus_10931#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 691 fasta sequence
[AGGTGGNCGGGGTCGATAAGCTTGCTTCCCGAGGGCGAGGCAAGGGGGCACCTCAAGGGCCGCCAAGTTTGTCGTTAGCCCCGACCATAAGCATATGCCGGCTATTCTGGGGGGCCTTGTGTTCATCATTGCCGCGGTGGGGGCGACGCCCTCTCTGGGTCCGATCCTGGAGCTGGTCAAGGTCAACGGCAATCTGGGGTTCGTGGGCGCGCCGGAGAAGCCCGTCGAGCTCCCTTCCTTCCCTTTCATTTTCGGTAAGAGGATGGTGAGGGGGAGCCTAACGGGTGGGATGAAGGAAACCCCGGAGCTTTTGGCCCTTTTCGGGGGGCCCAACCTCACCTGGGGCATTGGGTTTGGGTCCCCGGGCAGGATTAACGATGCGCTCCCCAGGTTGGGGGGCAAAGACGTCCGCTCCCGTTTTGTTATTAACGTTGGGGGGGTCTCCCAGCTTTAGATTCCTGCTCCTTTCATATTGGTGCCTAGGGCCACCCCCCCGGCCTTTTTTAATTTAATTTTTTGGGGGCTTTGCCCCCAGAATGGGCCCGTTCGAGCTGTCGTTTTTTCGTTGGCCCCGTGAAGTAACTGTCCCCCCTTTGTATTTTTTTGAGAAATGTTCCGTGATAAATCTTCCATGGCCTTTTTTTTTTTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[-] EMBL CA759728 [AGGTGGNCGGGGTCGATAAGCTTGCTTCCCGAGGGCGAGGCAAGGGGGCACCTCAAGGGCCGCCAAGTTTGTCGTTAGCCCCGACCATAAGCATATGCCGGCTATTCTGGGGGGCCTTGTGTTCATCATTGCCGCGGTGGGGGCGACGCCCTCTCTGGGTCCGATCCTGGAGCTGGTCAAGGTCAACGGCAATCTGGGGTTCGTGGGCGCGCCGGAGAAGCCCGTCGAGCTCCCTTCCTTCCCTTTCATTTTCGGTAAGAGGATGGTGAGGGGGAGCCTAACGGGTGGGATGAAGGAAACCCCGGAGCTTTTGGCCCTTTTCGGGGGGCCCAACCTCACCTGGGGCATTGGGTTTGGGTCCCCGGGCAGGATTAACGATGCGCTCCCCAGGTTGGGGGGCAAAGACGTCCGCTCCCGTTTTGTTATTAACGTTGGGGGGGTCTCCCAGCTTTAGATTCCTGCTCCTTTCATATTGGTGCCTAGGGCCACCCCCCCGGCCTTTTTTAATTTAATTTTTTGGGGGCTTTGCCCCCAGAATGGGCCCGTTCGAGCTGTCGTTTTTTCGTTGGCCCCGTGAAGTAACTGTCCCCCCTTTGTATTTTTTTGAGAAATGTTCCGTGATAAATCTTCCATGGCCTTTTTTTTTTTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10931#0 GTCCTAACCAACAGTCAGGAACAGCAACAAAAGTAAGCCAAGAATCTCTCTGCCTCCCAC 60
consensus_10931#1 ------------------------------------------------------------
consensus_10931#0 CAACAACCACACACACTCACAGCTTTGGTCATGGAGGTCACCCCCAACCACACGCAGACC 120
consensus_10931#1 ------------------------------------------------------------
consensus_10931#0 GTCTCCGGCTGGGCCGCCATGGACGAGTCCGGCAAGATCGTGCCCTTCGTCTTCAAGAGA 180
consensus_10931#1 ------------------------------------------------------------
consensus_10931#0 AGGGAGAACGGGGTGGACGACGTGACGATCAAGGTGAAGTACTGCGGGATGTGCCACACG 240
consensus_10931#1 ------------------------------------------------------------
consensus_10931#0 GACCTGCACTTCATCCACAACGACTGGGGGATCACCATGTACCCGGTGGTGCCGGGGCAC 300
consensus_10931#1 ------------------------------------------------------------
consensus_10931#0 GAGATCACCGGCGTGGTGACCAAGGTGGGCACCAACGTGGCCGGGTTCAAGGTGGGCGAC 360
consensus_10931#1 ------------------------------------------------------------
consensus_10931#0 CGCGTGGGCGTGGGGTGCATCGCGGCGTCGTGCCTCGACTGCGAGCACTGCCGGCGGTCG 420
consensus_10931#1 ------------------------------------------------------------
consensus_10931#0 GAGGAGAACTACTGCGACAAGGTGGCGCTCACCTACAACGGCATCTTCTGGGACGGCAGC 480
consensus_10931#1 ------------------------------------------------------------
consensus_10931#0 ATCACCTACGGCGGCTACTCCGGCATGCTGGTGGCGCACAAGCGGTTCGTCGTGCGGATC 540
consensus_10931#1 ------------------------------------------------------------
consensus_10931#0 CCGGACACCCTCCCGCTGGACGCCGCGGCGCCGCTGCTGTGCGCGGGCATCACGGTGTAC 600
consensus_10931#1 ------------------------------------------------------------
consensus_10931#0 AGCCCCATGAAGCAGCACGGCATGCTGCAGGCCGACGCGGCCGGCCGGCGGCTCGGCGTG 660
consensus_10931#1 ------------------------------------------------------------
consensus_10931#0 GTCGGCCTCGGCGGCCTCGGCCACGTCGCCGTCAAGTTCGGCAAGGCGTTCGGCCTCCAC 720
consensus_10931#1 ----------------------------------------------------------AG 2
*
consensus_10931#0 GTCACCGTCATCAGCACGTCTCCGGCCAAGGAGCGCGAGGCCAGGGAGAACCTCAAGG-C 779
consensus_10931#1 GTGGNCGGGGTCGATAAGCTTGCTTCCC--GAGGGCGAGGCAAGGGGGCACCTCAAGGGC 60
** ** ** * * * * ** *** ******* **** * ********* *
consensus_10931#0 CGACAACTTCGTCGTCAGCACCGACCAGAAGCAGATGCAGGCTATGACGAGGAGCCTTGA 839
consensus_10931#1 CGCCAAGTTTGTCGTTAGCCCCGACCATAAGCATATGCCGGCTATTCTGGGGGGCCTTGT 120
** *** ** ***** *** ******* ***** **** ****** * ** ******
consensus_10931#0 CTACATCATTGACACGGTCGCGGCGACGCACTCTCTGGGTCCGATCCTGGAGCTGCTCAA 899
consensus_10931#1 GTTCATCATTGCCGCGGTGGGGGCGACGCCCTCTCTGGGTCCGATCCTGGAGCTGGTCAA 180
* ******** * **** * ******** ************************* ****
consensus_10931#0 GGTCAACGGCAAGCTGGTGCTCGTGGGCGCGCCGGAGAAGCCCGTCGAGCTCCCTTCCTT 959
consensus_10931#1 GGTCAACGGCAATCTGGGGTTCGTGGGCGCGCCGGAGAAGCCCGTCGAGCTCCCTTCCTT 240
************ **** * ****************************************
consensus_10931#0 CCCTCTCATCTTCGGTAAGAGGACGGTGAGTGGGAGCATGACGGGTGGGATGAAGGAGAC 1019
consensus_10931#1 CCCTTTCATTTTCGGTAAGAGGATGGTGAGGGGGAGCCTAACGGGTGGGATGAAGGAAAC 300
**** **** ************* ****** ****** * ***************** **
consensus_10931#0 GCAGGAGATGATGGACATTTGCGGGGAGCACAACATCACCTGCGACATCGAGATCGTGTC 1079
consensus_10931#1 CCCGGAGCTTTTGGCCCTTTTCGGGGGGCCCAACCTCACCTGGGGCATTGGGTTTGGGTC 360
* **** * *** * *** ***** ** **** ******* * *** * * * * ***
consensus_10931#0 CACGGACAGGATCAACGATGCGCTCGCCAGGTTGGCGCGCAACGACGTCCGCTACCGCTT 1139
consensus_10931#1 CCCGGGCAGGATTAACGATGCGCTCCCCAGGTTGGGGGGCAAAGACGTCCGCTCCCGTTT 420
* *** ****** ************ ********* * **** ********** *** **
consensus_10931#0 CGTCATCAACGTTGGGGGCGACTCCAAGCTCTAGACTCATGCTACTATCATATTGCTACC 1199
consensus_10931#1 TGTTATTAACGTTGGGGGGGTCTCCCAGCTTTAGATTCCTGCTCCTTTCATATTGGTGCC 480
** ** *********** * **** **** **** ** **** ** ******** * **
consensus_10931#0 TAGTACCAACCTCCATGCCTTTCTTAATTTAATTTATTGGAGGCTCTGCACGCAGAATGG 1259
consensus_10931#1 TAGGGCCACCCCCCCGGCCTTTTTTAATTTAATTTTTTGGGGGCTTTGCCCCCAGAATGG 540
*** *** ** ** ****** ************ **** **** *** * ********
consensus_10931#0 GACAGTTCGAGCTGTCGTTTTCTCGTTGGCCACGTGAAGTAACTGTACGCACTTTGTACT 1319
consensus_10931#1 GCCCGTTCGAGCTGTCGTTTTTTCGTTGGCCCCGTGAAGTAACTGTCCCCCCTTTGTATT 600
* * ***************** ********* ************** * * ******* *
consensus_10931#0 TATTCGAGAAATGATCAGTGATAAATCATCAATGGCCTTATTTTATTCTTAAAAAAAAAA 1379
consensus_10931#1 TTTTTGAGAAATGTTCCGTGATAAATCTTCCATGGCCTTTTTTTTTTTTTTAAAAAAAAA 660
* ** ******** ** ********** ** ******** **** ** ** *********
consensus_10931#0 AAAAA-------------------------- 1384
consensus_10931#1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 691
*****
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||