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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10937#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1285 fasta sequence
[AGCATTCTTAAGTTTAAGATCAAAGAGTCGGGCGGAAAAAGGGGAGAGCTCCCCGTTCCTGGTTCTCCTGTAGCTGGATTCCCCGGAACCACAAGAATCCTTAGAATGGGATTCCAACTCAGCACCTTTTGTTTTGAGATTTTGAGAAGAGTTGCTCTTTGGAGAGCACAGTACGATGAAAGTTGTAAGCTGTGTTCGGGGGGGAGTTATTGTCTATCGTTGGCCTCTATGGTAGAACCCGTCGGGGAGGCCTGAGAGGCGGTGGTTTACCCTGTGGCGGATGTCAGCGGTACTCCCCCCCGTCCGGCGCGCGGCTCCTCCGTCGACCCGCCGTAAGTAAACCTTCCGATGGCCGCCGCCGCCGCCGCCGCCGCCTCCGCCACCGCCGCCATCTCCGGTGCGTTACTCCCCCACGCCGTCGCATGCCACCGCTTGCCGCCGCGGCCGCAGCTCCTCGCGGTGTCCTCCTCATTCCGCCGCCTCTCCCTGACCGCCTCCCCTCGCCGGGCCAGCCGCCTGGTCCCTCGCGCGGACGCCAGCGCAGAAGCGGGAGAACCGGAGCCCGCCGCTGAGGCTGAGGCTGAGGCTGTTGCTGCCTCGACTGACGCTGAGGTGGAGGAGGGTGAGGCGGAGGCGGCTGTCGCGGTGGCGGAGGAAGAGCAGGAGGAAGAAGATGAGCCTCCGCCGCCGAGCAAGCCCCCGGTTAAGTTCGGGGAGATCATTGGGATTCTGAACAAACAGTTCATTGAGGAGGCTGAAAAGGTGAAGACTTTACCAGATCTTAGGCCTGGTGACATCATTGAGCTTAGAATGCAACGGCCCAACAAGAGGAGATTGTCGCTCTTTAAGGGCATAATTATAGCAAAACACAAATCTGGTGTTCACACCACAATCCGTGTCAGAAGGATTATTGCTGGTGTCGGAGTTGAGATTACCTTCCC-TATATATTCACCCAGGATCAAGGAAATTAAAGTAATCAGGCACAAGAAAGTGAGAAGAGCAAAGTTATATTATTTGAAGCACAAGCTTCCCCGCTTTTCAACTTTCAAGTAAAAATTAGATATGCTGGCAGAAGAGCTTCTCTC-ACTAGCATTGTTACTTTC-TCTAGCAAATGCTTTTTTATTTTTTTGTTCAAAC-CTATGCTTTTCACTGTAATCACTAAATTTCAAATGTGTAATATCTACACCTTTTCTGTTTGGCATATATTTTTGTCTTTCTGTGGAAATGTACTTTCTTCGCTTTGTATAAAGTTCCTACTAGCATTTTGTTATGAATTTGTTGACAT]
[+] EMBL AK060578 [AGCATTCTTAAGTTTAAGATCAAAGAGTCGGGCGGAAAAAGGGGAGAGCTCCCCGTTCCTGGTTCTCCTGTAGCTGGATTCCCCGGAACCACAAGAATCCTTAGAATGGGATTCCAACTCAGCACCTTTTGTTTTGAGATTTTGAGAAGAGTTGCTCTTTGGAGAGCACAGTACGATGAAAGTTGTAAGCTGTGTTCGGGGGGGAGTTATTGTCTATCGTTGGCCTCTATGGTAGAACCCGTCGGGGAGGCCTGAGAGGCGGTGGTTTACCCTGTGGCGGATGTCAGCGGTACTCCCCCCCGTCCGGCGCGCGGCTCCTCCGTCGACCCGCCGTAAGTAAACCTTCCGATGGCCGCCGCCGCCGCCGCCGCCGCCTCCGCCACCGCCGCCATCTCCGGTGCGTTACTCCCCCACGCCGTCGCATGCCACCGCTTGCCGCCGCGGCCGCAGCTCCTCGCGGTGTCCTCCTCATTCCGCCGCCTCTCCCTGACCGCCTCCCCTCGCCGGGCCAGCCGCCTGGTCCCTCGCGCGGACGCCAGCGCAGAAGCGGGAGAACCGGAGCCCGCCGCTGAGGCTGAGGCTGAGGCTGTTGCTGCCTCGACTGACGCTGAGGTGGAGGAGGGTGAGGCGGAGGCGGCTGTCGCGGTGGCGGAGGAAGAGCAGGAGGAAGAAGATGAGCCTCCGCCGCCGAGCAAGCCCCCGGTTAAGTTCGGGGAGATCATTGGGATTCTGAACAAACAGTTCATTGAGGAGGCTGAAAAGGTGAAGACTTTACCAGATCTTAGGCCTGGTGACATCATTGAGCTTAGAATGCAACGGCCCAACAAGAGGAGATTGTCGCTCTTTAAGGGCATAATTATAGCAAAACACAAATCTGGTGTTCACACCACAATCCGTGTCAGAAGGATTATTGCTGGTGTCGGAGTTGAGATTACCTTCCC TATATATTCACCCAGGATCAAGGAAATTAAAGTAATCAGGCACAAGAAAGTGAGAAGAGCAAAGTTATATTATTTGAAGCACAAGCTTCCCCGCTTTTCAACTTTCAAGTAAAAATTAGATATGCTGGCAGAAGAGCTTCTCTC ACTAGCATTGTTACTTTC TCTAGCAAATGCTTTTTTATTTTTTTGTTCAAAC CTATGCTTTTCACTGTAATCACTAAATTTCAAATGTGTAATATCTACACCTTTTCTGTTTGGCATATATTTTTGTCTTTCTGTGGAAATGTACTTTCTTCGCTTTGTATAAAGTTCCTACTA ]
[+] EMBL AK068164 [ CCGTCCGGCGCGCGGCTCCTCCGTCGACCCGCCGTAAGTAAACCTTCCGATGGCCGCCGCCGCCGCCGCCGCCGCCTCCGCCACCGCCGCCATCTCCGGTGCGTTACTCCCCCACGCCGTCGCATGCCACCGCTTGCCGCCGCGGCCGCAGCTCCTCGCGGTGTCCTCCTCATTCCGCCGCCTCTCCCTGACCGCCTCCCCTCGCCGGGCCAGCCGCCTGGTCCCTCGCGCGGACGCCAGCGCAGAAGCGGGAGAACCGGAGCCCGCCGCTGAGGCTGAGGCTGAGGCTGTTGCTGCCTCGACTGACGCTGAGGTGGAGGAGGGTGAGGCGGAGGCGGCTGTCGCGGTGGCGGAGGAAGAGCAGGAGGAAGAAGATGAGCCTCCGCCGCCGAGCAAGCCCCCGGTTAAGTTCGGGGAGATCATTGGGATTCTGAACAAACAGTTCATTGAGGAGGCTGAAAAGGTGAAGACTTTACCAGATCTTAGGCCTGGTGACATCATTGAGCTTAGAATGCAACGGCCCAACAAGAGGAGATTGTCGCTCTTTAAGGGCATAATTATAGCAAAACACAAATCTGGTGTTCACACCACAATCCGTGTCAGAAGGATTATTGCTGGTGTCGGAGTTGAGATTACCTTCCC TATATATTCACCCAGGATCAAGGAAATTAAAGTAATCAGGCACAAGAAAGTGAGAAGAGCAAAGTTATATTATTTGAAGCACAAGCTTCCCCGCTTTTCAACTTTCAAGTAAAAATTAGATATGCTGGCAGAAGAGCTTCTCTC ACTAGCATTGTTACTTTC TCTAGCAAATGCTTTTTTATTTTTTTGTTCAAAC CTATGCTTTTCACTGTAATCACTAAATTTCAAATGTGTAATATCTACACCTTTTCTGTTTGGCATATATTTTTGTCTTTCTGTGGAAATGTACTTTCTTCGCTTTGTATAAAGTTCCTACTAGCATTTTGTTATGAATTTGTTGACAT]
[+] EMBL AK104153 [ CGTCCGGCGCGCGGCTCCTCCGTCGACCCGCCGTAAGTAAACCTTCCGATGGCCGCCGCCGCCGCCGCCGCCGCCTCCGCCACCGCCGCCATCTCCGGTGCGTTACTCCCCCACGCCGTCGCATGCCACCGCTTGCCGCCGCGGCCGCAGCTCCTCGCGGTGTCCTCCTCATTCCGCCGCCTCTCCCTGACCGCCTCCCCTCGCCGGGCCAGCCGCCTGGTCCCTCGCGCGGACGCCAGCGCAGAAGCGGGAGAACCGGAGCCCGCCGCTGAGGCTGAGGCTGAGGCTGTTGCTGCCTCGACTGACGCTGAGGTGGAGGAGGGTGAGGCGGAGGCGGCTGTCGCGGTGGCGGAGGAAGAGCAGGAGGAAGAAGATGAGCCTCCGCCGCCGAGCAAGCCCCCGGTTAAGTTCGGGGAGATCATTGGGATTCTGAACAAACAGTTCATTGAGGAGGCTGAAAAGGTGAAGACTTTACCAGATCTTAGGCCTGGTGACATCATTGAGCTTAGAATGCAACGGCCCAACAAGAGGAGATTGTCGCTCTTTAAGGGCATAATTATAGCAAAACACAAATCTGGTGTTCACACCACAATCCGTGTCAGAAGGATTATTGCTGGTGTCGGAGTTGAGATTACCTTCCC TATATATTCACCCAGGATCAAGGAAATTAAAGTAATCAGGCACAAGAAAGTGAGAAGAGCAAAGTTATATTATTTGAAGCACAAGCTTCCCCGCTTTTCAACTTTCAAGTAAAAATTAGATATGCTGGCAGAAGAGCTTCTCTC ACTAGCATTGTTACTTTC TCTAGCAAATGCTTTTTTATTTTTTTGTTCAAAC CTATGCTTTTCACTGTAATCACTAAATTTCAAATGTGTAATATCTACACCTTT ]
[-] EMBL AU222598 [ CTCCTCATNCCGCCGCCTCTCCCTGACCGCCTCCCCTCGCCGGGCCAGCCGCCTGGTCCCTCGCGCGGACGCCAGCGCAGAAGCGGGAGAACCGGAGCCCGCCGCTGAGGCTGAGGCTGAGGCTGTTGCTGCCTCGACTGACGCTGAGGTGGAGGAGGGTGAGGCGGAGGCGGCTGTCGCGGTGGCGGAGGAAGAGCAGGAGGAAGAAGATGAGCCTCCGCCGCCGAGCAAGCCCCCGGTTAAGTTCGGGGAGATCATTGGGATTCTGAACAAACAGTTCATTGAGGAGGCTGAAAAGGTGAAGACTTTACCAGATCTTAGGCCTGGTGACATCATTGAGCTTAGAATGCAACGGCCCAACAAGAGGAGATTGTCGCTCTTTAAGGGCATAATTATAGCAAAACACAAATCTGGTGTTCACACCACAATCCGTGTCANAAGGATTATTGCTGGTGTCGGAGTTGAGATTACCTTCCCTTATATATTCACCCAGGATCAAGGAAATTAAAGTAATCAGGNACAAGAAAGTGAGNAGAGCAAAGTTAT TTATTTGAAGCACAAGCTTCCCCGCTTTTCAACTTTCAAGTAAAAATTAGATATGCTGGCAGAAGAGCTTCTCTC ACTAGCATTGTTACTTTC TCTA ]
[-] EMBL C74047 [ GCAAAACACAAATCTGGTG TCACACCACAATCCGTGTCAGAAGGATTATTGCTGGTGTCGGAGTTGAGATTACCTTCCC TATATATTCACCCNGGATCAAGGAAATTAAAGTAATCAGGCACAAGAAAGTGAGAAGAGCAAAGTTATATTATTTGAAGCACAAGCTTCCCCGCTTTTCAACTTTCAAGTAAAAATTAGATATGCTGGCAGAAGAGCTTCTCTC ACTAGCATTGTTACTTTC TCTAGNAAATGCTTTTTTATTTTTTTGTTCAAAC CTATGCTTTTCACTGTAATCACTAAATTTCAAATGTGTAATATCTACACCTTTTCTGTTTGGNATATATTTTTGTCTTTCTGTGGAAATGTACTTTCTTCGCTTTGTATAAAGTTCCTA ]
[-] EMBL BU673099 [ GGCAGAAGAGCTTCTCTCAACTAGCATTGTTACTTTCGTCTAGCAAATGCTGTTTTATTTTTTTTTTCAAACACTATGCTTTTCACTGTAATCACTAAATTTCAAATGTGTAATATCTACACCTTTTCTGTTTGGCATATATTTTTGTC ]
consensusID : consensus_10937#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 399 fasta sequence
[ACCCACAACCCGTGTCAGAAGGGATTATTGCTGGTGNCGGAGTTGAGATTACCTTCCCCTATAAATTCACCCCAGGATCAAGGAAATTAAAGTAANCAGGCACAAGAAAGTGAGAAGAGCAAAGTTATATTATTTGAAGCACAAGCTTCCCCGCTTTTCAACTTTCAAGTAAAAATTAGATATGCTGGCAGAAGAGCNTCTCTCACTAGCATTGTTACTTTCTCTAGCAAATGCTTTTTTANTTTTTTGTTCAAACCTATGCTTTTCACTGTAATCACTAAATTTCAAATGTGTAATATCTACACCTTTTCTGTTTGGCATATATTTTTGTCTTTCTGTGGAAATGTACTTTCTTCGCTTTGTATAAAGTTCCTACTAGCATTTTGTTAAAAAAAAAAA]
[+] EMBL AU033201 [ACCCACAACCCGTGTCAGAAGGGATTATTGCTGGTGNCGGAGTTGAGATTACCTTCCCCTATAAATTCACCCCAGGATCAAGGAAATTAAAGTAANCAGGCACAAGAAAGTGAGAAGAGCAAAGTTATATTATTTGAAGCACAAGCTTCCCCGCTTTTCAACTTTCAAGTAAAAATTAGATATGCTGGCAGAAGAGCNTCTCTCACTAGCATTGTTACTTTCTCTAGCAAATGCTTTTTTANTTTTTTGTTCAAACCTATGCTTTTCACTGTAATCACTAAATTTCAAATGTGTAATATCTACACCTTTTCTGTTTGGCATATATTTTTGTCTTTCTGTGGAAATGTACTTTCTTCGCTTTGTATAAAGTTCCTACTAGCATTTTGTTAAAAAAAAAAA]
[+] EMBL AU033266 [ TTATTTGAAGCACAAGCTTCCCCGCTTTTCAACTTTCAAGNNAAAATTAGATATGCTGGCAGAAGAGCNTCTCTCACTAGCATTGTTACTTTCTCTAGCAAATGCNTTTTTATTTTTTTGNTCAAACCTATGCTTTTCACTGTAATCNCTAAATTTCAAATGTGTAATATCTACACCTTTTCTGTTTGGCATATATTTTTGTCTTTCTGTGGAAATGTACTTTCTTCGCTTTGTATAAAGTTCCTACTA ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10937#0 AGCATTCTTAAGTTTAAGATCAAAGAGTCGGGCGGAAAAAGGGGAGAGCTCCCCGTTCCT 60
consensus_10937#1 ------------------------------------------------------------
consensus_10937#0 GGTTCTCCTGTAGCTGGATTCCCCGGAACCACAAGAATCCTTAGAATGGGATTCCAACTC 120
consensus_10937#1 ------------------------------------------------------------
consensus_10937#0 AGCACCTTTTGTTTTGAGATTTTGAGAAGAGTTGCTCTTTGGAGAGCACAGTACGATGAA 180
consensus_10937#1 ------------------------------------------------------------
consensus_10937#0 AGTTGTAAGCTGTGTTCGGGGGGGAGTTATTGTCTATCGTTGGCCTCTATGGTAGAACCC 240
consensus_10937#1 ------------------------------------------------------------
consensus_10937#0 GTCGGGGAGGCCTGAGAGGCGGTGGTTTACCCTGTGGCGGATGTCAGCGGTACTCCCCCC 300
consensus_10937#1 ------------------------------------------------------------
consensus_10937#0 CGTCCGGCGCGCGGCTCCTCCGTCGACCCGCCGTAAGTAAACCTTCCGATGGCCGCCGCC 360
consensus_10937#1 ------------------------------------------------------------
consensus_10937#0 GCCGCCGCCGCCGCCTCCGCCACCGCCGCCATCTCCGGTGCGTTACTCCCCCACGCCGTC 420
consensus_10937#1 ------------------------------------------------------------
consensus_10937#0 GCATGCCACCGCTTGCCGCCGCGGCCGCAGCTCCTCGCGGTGTCCTCCTCATTCCGCCGC 480
consensus_10937#1 ------------------------------------------------------------
consensus_10937#0 CTCTCCCTGACCGCCTCCCCTCGCCGGGCCAGCCGCCTGGTCCCTCGCGCGGACGCCAGC 540
consensus_10937#1 ------------------------------------------------------------
consensus_10937#0 GCAGAAGCGGGAGAACCGGAGCCCGCCGCTGAGGCTGAGGCTGAGGCTGTTGCTGCCTCG 600
consensus_10937#1 ------------------------------------------------------------
consensus_10937#0 ACTGACGCTGAGGTGGAGGAGGGTGAGGCGGAGGCGGCTGTCGCGGTGGCGGAGGAAGAG 660
consensus_10937#1 ------------------------------------------------------------
consensus_10937#0 CAGGAGGAAGAAGATGAGCCTCCGCCGCCGAGCAAGCCCCCGGTTAAGTTCGGGGAGATC 720
consensus_10937#1 ------------------------------------------------------------
consensus_10937#0 ATTGGGATTCTGAACAAACAGTTCATTGAGGAGGCTGAAAAGGTGAAGACTTTACCAGAT 780
consensus_10937#1 ------------------------------------------------------------
consensus_10937#0 CTTAGGCCTGGTGACATCATTGAGCTTAGAATGCAACGGCCCAACAAGAGGAGATTGTCG 840
consensus_10937#1 ------------------------------------------------------------
consensus_10937#0 CTCTTTAAGGGCATAATTATAGCAAAACACAAATCTGGTGTTCACACCACAATCCGTGTC 900
consensus_10937#1 -------------------------------------------AC-CCACAACCCGTGTC 16
** ****** *******
consensus_10937#0 AGAAGG-ATTATTGCTGGTGTCGGAGTTGAGATTACCTTCCC-TATATATTCACCC-AGG 957
consensus_10937#1 AGAAGGGATTATTGCTGGTGNCGGAGTTGAGATTACCTTCCCCTATAAATTCACCCCAGG 76
****** ************* ********************* **** ******** ***
consensus_10937#0 ATCAAGGAAATTAAAGTAATCAGGCACAAGAAAGTGAGAAGAGCAAAGTTATATTATTTG 1017
consensus_10937#1 ATCAAGGAAATTAAAGTAANCAGGCACAAGAAAGTGAGAAGAGCAAAGTTATATTATTTG 136
******************* ****************************************
consensus_10937#0 AAGCACAAGCTTCCCCGCTTTTCAACTTTCAAGTAAAAATTAGATATGCTGGCAGAAGAG 1077
consensus_10937#1 AAGCACAAGCTTCCCCGCTTTTCAACTTTCAAGTAAAAATTAGATATGCTGGCAGAAGAG 196
************************************************************
consensus_10937#0 CTTCTCTCACTAGCATTGTTACTTTCTCTAGCAAATGCTTTTTTATTTTTTTGTTCAAAC 1137
consensus_10937#1 CNTCTCTCACTAGCATTGTTACTTTCTCTAGCAAATGCTTTTTTANTTTTTTGTTCAAAC 256
* ******************************************* **************
consensus_10937#0 CTATGCTTTTCACTGTAATCACTAAATTTCAAATGTGTAATATCTACACCTTTTCTGTTT 1197
consensus_10937#1 CTATGCTTTTCACTGTAATCACTAAATTTCAAATGTGTAATATCTACACCTTTTCTGTTT 316
************************************************************
consensus_10937#0 GGCATATATTTTTGTCTTTCTGTGGAAATGTACTTTCTTCGCTTTGTATAAAGTTCCTAC 1257
consensus_10937#1 GGCATATATTTTTGTCTTTCTGTGGAAATGTACTTTCTTCGCTTTGTATAAAGTTCCTAC 376
************************************************************
consensus_10937#0 TAGCATTTTGTTATGAATTTGTTGACAT 1285
consensus_10937#1 TAGCATTTTGTTAAAAAAAAAAA----- 399
************* **
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||