These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10950#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 678 fasta sequence [TTTTTTTTTTTTTTTTGGAATCAAATTCGTATATATATCCATTCGTTCGCAAAATACCTCAAGACTTAATTTATAAGCTTACAATGTGTGTTGTTTGTGATTACACAGCTAAAAAGAAAGAGAGAAGAACAAACAAAGAAACGGCCAAAGAAAAGGCCTGAATCAACAAGAAGTTCCTAAAATCAAATTAAAACCGAATTTCTATGCACTGAATTCATCTGAACCAATAATTCAGAGCAAGCCAGGGCGGGAGTGGAAGGGGAACTGGTACATCAAGATTGGAGCTGATGATGATGATGATCCACTCTTCTTCTTCCTCATCTCGACCTTCTCCACACCAGCATGATGATCACCATCTGATCCTCCTCCAA---TCTTCTTCTCCTTCTCACCAACTTCAGCAGCATCTGCATCCTTCGACTTCGAGCAGTACAGATTCTTCTGCTGCTGATTCTGATCTACAGGTTGCTGCTGCTGCTGCTTCGCCGGCGACACCTTCTTCTTCCCCATCATCCCAGCACCCAAGCAGCTCAAACCCATCACTTACTACTCCAATTGATCCTCCTCTCAATCGTAT-GTATGTACGTG-TTCGTTGTTGCTCACTTGCTTGCTTGCTAGTTTTGGTATCGCCCTTGGTTGGGGCTTTAATCAACGCTTATCGAAAGCCGGAGACCTTGGGGG] [+] EMBL CA759372 [TTTTTTTTTTTTTTTTGGAATCAAATTCGTATATATATCCATTCGTTCGCAAAATACCTCAAGACTTAATTCATAAGCTTACAATGGGTGTTGTTTGGGATTACACAGCTAAAAAGAAAGAGAGAAGAACAAACAAAGAAACGGCCAAAGAAAAGGCCTGAATCAACAAGAAGTTCCTAAAATCAAATTAAAACCGAATTTCTATGCACTGAATTCATCTGAACCAATAATTCAAAGCAAGCCAGGGCGGGAGTGGAAGGGGAACTGGTACATCAAGATCGGAGCTGATGATGATGATGATCCACTCTTCTTCTTCCTCATCTCGACCTTCTCCACACCAGCATGATGATCACCATCTGATCCTCCTCCAA TCTTCTTCTCCTTCTCACCAACTTCAGCAGCATCTGCATCCTTCGACTTCGAGCAGTACAGATTCTTCTGGTGCTGATTCTGATCTACAGGTTGCTGCTGCTGCTGCTTCGCCGGGAACACCTTCTTCTTCCCCATCATCCCANGACCCAGGCAGGTGAAACCCATCACTTACTACTCCAATTGATCCTCCTCTCAATCGGATGGAACGACCGTG TTCGTTGGTGCTCACTTGCTTGCTTGGTAGGTTTGGTATCGCCCTTGGTTGGGGCTTTAATCAACGCTTATCGAAAGCCGGAGACCTTGGGGG] [-] EMBL CA764508 [ aTGGAATCAAATTCGTATATATATCCATTCGTTCGCAAAATACCTCAAGACTTAATTTATAAGCTTACAATGTGTGTTGTTTGTGATTACACAGCTAAAAAGAAAGAGAGAAGAACAAACAAAGAAACGGCCAAAGAAAAGGCCTGAATCGACAAGAAGTTCCTAAAATCAAATTAAAACCGAATTTCTATGCACTGAATTCATCTGAACCAATAATTCAGAGCAAGCCAGGGCGGGAGTGGAAGGGGAACTGGTACATCAAGATTGGAGCTGATGATGATGATGATCCACTCTTCTTCTTCCTCATCTCGACCTTCTCCACACCAGCATGATGATCACCATCTGATCCTCCTCCAA TCTTCTTCTCCTTCTCACCAACTTCAGCAGCATCTGCATCCTTCGACTTCGAGCAGTACAGATTCTTCTGCTGCTGATTCTGATCTACAGGTTGCTGCTGCTGCTGCTTCGCCGGCGACACCTTCTTCTTCCCCATCATCCCAGCACCCAAGCAGCTCAAACCCATCACTTACTACTCCAATTGATCCTCCTCTCAATCGTAT GTATGTACGTG TTCGTTGTTGCTCACTTGCTTGCTTGCTAGTT ] [+] EMBL BI306574 [ TCAAATTCGTATATATATCCATTCGTTCGCAAAATACCTCAAGACTTAATTTATAAGCTTACAATGTGTGTTGTTTGTGATTACACAGCTAAAAAGAAAGAGAGAAGAACAAACAAAGAAACGGCCAAAGAAAAGGCCTGAATCAACAAGAAGTTCCTAAAATCAAATTAAAACCGAATT ] [-] EMBL CF315799 [ tttTTCGTTCGCAAAATACCTCAAGACTTAATTTATAAGCTTGCAATGTGTGTTGTTTGTGATTACACAGCTAAAAAGAAAGAGAGAAGAACAAACAAAGAAACGGCCAAAGAAAAGGCCTGAATCAACAAGAAGTTCCTAAAATCAAATTAAAACCGAATTTCTATGCACTGAATTCATCTGAACCAATAATTCAGAGCAAGCCAGGGCGGGAGTGGAAGGGGAACTGGTACATCAAGATTGGAGCTGATGATGATGATGATCCACTCTTCTTCTTCCTCATCTCGACCTTCTCCACACCAGCATGATGATCACCATCTGATCCTCCTCCAA TCTTCTTCTCCTTCTCACCAACTTCAGCAGCATCTGCATCCTTCGACTTCGAGCAGTACAGATTCTTCTGCTGCTGATTCTGATCTACAGGTTGCTGCTGCTGCTGCTTCGCCGGCGACACCTTCTTCTTCCCCATCATCCCAGCACCCAAGCAGCTCAAACCCATCACTTACTACTCCAATTGATCCTCCTCTCAATCGTAT GTATGTACGTG TTCGTTGTTGCTCACTTGCTTGCTTGCTAGT ] [+] EMBL CF315800 [ ttttTTCGTTCGCAAAATACCTCAAGACTTAATTTATAAGCTTGCAATGTGTGTTGTTTGTGATTACACAGCTAAAAAGAAAGAGAGAAGAACAAACAAAGAAACGGCCAAAGAAAAGGCCTGAATCAACAAGAAGTTCCTAAAATCAAATTAAAACCGAATTTCTATGCACTGAATTCATCTGAACCAATAATTCAGAGCAAGCCAGGGCGGGAGTGGAAGGGGAACTGGTACATCAAGATTGGAGCTGATGATGATGATGATCCACTCTTCTTCTTCCTCATCTCGACCTTCTCCACACCAGCATGATGATCACCATCTGATCCTCCTCCAA TCTTCTTCTCCTTCTCACCAACTTCAGCAGCATCTGCATCCTTCGACTTCGAGCAGTACAGATTCTTCTGCTGCTGATTCTGATCTACAGGTTGCTGCTGCTGCTGCTTCGCCGGCGACACCTTCTTCTTCCCCATCATCCCAGCACCCAAGCAGCTCAAACCCATCACTTACTACTCCAATTGATCCTCCTCTCAATCGTAT GTATGTACGTGTTTCGTTGTTGCTCACTTGCTTGCTTGCTAGTTTTGCTATtttcta ] [+] EMBL OSAA31852 [ AATACCTCAAGACTTAATTTATAAGCTTACAATGTGTGTTGTTTGTGATTACACAGCTAAAAAGAAAGAGAGAAGAACAAACCAAGAAACGGCCAAAGAAAAGGCCTGAATCAACAAGAAGTTCCTAAAATCAAATTAAAACCGAATTTCTATGCACTTAATTCATCTGAACCAATAATTCAGAGCAAGCCA GGCGGGAGTGGAAGGGGAACTGGTACATCAATATTGGAGCTGATGATGATGATGATCCACTCTTCTTCTTCCTCCTC ] [-] EMBL OSAA31931 [ cggCTTCTCCACGCCAGCATGATGATCACCATCCGATCCTCCTCCAATCTTCTTCTTCTCCTCCTCACCAACTTCAGCAGCATGTGCATCCTTCGACTTCGAGCAGTACTGATTCTTCTGCTGCTGATTCTGATCTACAGGT TGCTGCTGCTGCTTCGCTGGCGACACCTTTTTCTTCCCCATCATCCCAGCACCCAAGCAGCTCAAACCCATCACTTACTACTCCAAT ] consensusID : consensus_10950#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 587 fasta sequence [TTTTTTTTTTTTACCTCAAGACTTAATTTATAAGCTTACAATGTGTGTTGTTTGTGATTACACAGCTAAAAAGAAAGAGAGAAGAACAAACAAAGAAACGGCCAAAGAAAAGGCCTGAATCAACAAGAAGTTCCTAAAATCAAATTAAAACCGAATTTCTATGCACTGAATTCATCTGAACCAATAATTCAAAGCAAGCCAGGGCGGGAGTGGAAGGGGAACTGGAACATCAAGATTGGAGCTGATGATGATGATGATCCACTCTTCTTCTTCCTCATCTCGACCTTCTCCACACCAGCATGATGATCACCATCTGATCCTCCTCCAATCTTCTTCTCCTTCTCACCAACTTCAGCAGCATCTGCATCCTTCGACTTCGAGCAGTACAGATTCTTCTGCTGCTGATTCTGATCTACAGGTTGCTGCTGCTGCTGCTTCGCCGGCGACACCTTCTTCTTCCCCATCATCCCAGCACCCAAGCAGCTCAGACCCATCACTTACTACTCCAATTGATCCTCCTCTCAATCGTATGTATGTACGTGTTCGTTGTTGCTCACTTGCTTGCTTGCTAGTTNTGCTATCCCCCT] [+] EMBL CA759375 [TTTTTTTTTTTTACCTCAAGACTTAATTTATAAGCTTACAATGTGTGTTGTTTGTGATTACACAGCTAAAAAGAAAGAGAGAAGAACAAACAAAGAAACGGCCAAAGAAAAGGCCTGAATCAACAAGAAGTTCCTAAAATCAAATTAAAACCGAATTTCTATGCACTGAATTCATCTGAACCAATAATTCAAAGCAAGCCAGGGCGGGAGTGGAAGGGGAACTGGAACATCAAGATTGGAGCTGATGATGATGATGATCCACTCTTCTTCTTCCTCATCTCGACCTTCTCCACACCAGCATGATGATCACCATCTGATCCTCCTCCAATCTTCTTCTCCTTCTCACCAACTTCAGCAGCATCTGCATCCTTCGACTTCGAGCAGTACAGATTCTTCTGCTGCTGATTCTGATCTACAGGTTGCTGCTGCTGCTGCTTCGCCGGCGACACCTTCTTCTTCCCCATCATCCCAGCACCCAAGCAGCTCAGACCCATCACTTACTACTCCAATTGATCCTCCTCTCAATCGTATGTATGTACGTGTTCGTTGTTGCTCACTTGCTTGCTTGCTAGTTNTGCTATCCCCCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10950#0 TTTTTTTTTTTTTTTTGGAATCAAATTCGTATATATATCCATTCGTTCGCAAAATACCTC 60 consensus_10950#1 -------------------------------------------TTTTTTTTTTTTACCTC 17 ** ****** consensus_10950#0 AAGACTTAATTTATAAGCTTACAATGTGTGTTGTTTGTGATTACACAGCTAAAAAGAAAG 120 consensus_10950#1 AAGACTTAATTTATAAGCTTACAATGTGTGTTGTTTGTGATTACACAGCTAAAAAGAAAG 77 ************************************************************ consensus_10950#0 AGAGAAGAACAAACAAAGAAACGGCCAAAGAAAAGGCCTGAATCAACAAGAAGTTCCTAA 180 consensus_10950#1 AGAGAAGAACAAACAAAGAAACGGCCAAAGAAAAGGCCTGAATCAACAAGAAGTTCCTAA 137 ************************************************************ consensus_10950#0 AATCAAATTAAAACCGAATTTCTATGCACTGAATTCATCTGAACCAATAATTCAGAGCAA 240 consensus_10950#1 AATCAAATTAAAACCGAATTTCTATGCACTGAATTCATCTGAACCAATAATTCAAAGCAA 197 ****************************************************** ***** consensus_10950#0 GCCAGGGCGGGAGTGGAAGGGGAACTGGTACATCAAGATTGGAGCTGATGATGATGATGA 300 consensus_10950#1 GCCAGGGCGGGAGTGGAAGGGGAACTGGAACATCAAGATTGGAGCTGATGATGATGATGA 257 **************************** ******************************* consensus_10950#0 TCCACTCTTCTTCTTCCTCATCTCGACCTTCTCCACACCAGCATGATGATCACCATCTGA 360 consensus_10950#1 TCCACTCTTCTTCTTCCTCATCTCGACCTTCTCCACACCAGCATGATGATCACCATCTGA 317 ************************************************************ consensus_10950#0 TCCTCCTCCAATCTTCTTCTCCTTCTCACCAACTTCAGCAGCATCTGCATCCTTCGACTT 420 consensus_10950#1 TCCTCCTCCAATCTTCTTCTCCTTCTCACCAACTTCAGCAGCATCTGCATCCTTCGACTT 377 ************************************************************ consensus_10950#0 CGAGCAGTACAGATTCTTCTGCTGCTGATTCTGATCTACAGGTTGCTGCTGCTGCTGCTT 480 consensus_10950#1 CGAGCAGTACAGATTCTTCTGCTGCTGATTCTGATCTACAGGTTGCTGCTGCTGCTGCTT 437 ************************************************************ consensus_10950#0 CGCCGGCGACACCTTCTTCTTCCCCATCATCCCAGCACCCAAGCAGCTCAAACCCATCAC 540 consensus_10950#1 CGCCGGCGACACCTTCTTCTTCCCCATCATCCCAGCACCCAAGCAGCTCAGACCCATCAC 497 ************************************************** ********* consensus_10950#0 TTACTACTCCAATTGATCCTCCTCTCAATCGTATGTATGTACGTGTTCGTTGTTGCTCAC 600 consensus_10950#1 TTACTACTCCAATTGATCCTCCTCTCAATCGTATGTATGTACGTGTTCGTTGTTGCTCAC 557 ************************************************************ consensus_10950#0 TTGCTTGCTTGCTAGTTTTGGTATCGCCCTTGGTTGGGGCTTTAATCAACGCTTATCGAA 660 consensus_10950#1 TTGCTTGCTTGCTAGTTNTGCTATCCCCCT------------------------------ 587 ***************** ** **** **** consensus_10950#0 AGCCGGAGACCTTGGGGG 678 consensus_10950#1 ------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||