These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10956#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 980 fasta sequence [GAGCTGATCAGCTGAACAGAACTGCCCCCAAGACTTGTGGAGTTGTAGCGAA-CTGCAAG-AGTGACGCGGCGGCGGCGATGGACGGCGGCGGGGTCGAGGCGGCGATGGACGGCGGCGGGGTCGAGGCGGCGACGACGGCGGCGTGGATGGCGCGGCACCGGGGGATGTACGAGCGGGCCACGAGGCACCCGTTCACCGTCTCCATCCGCGACGGCACCGTCGACCTGTCCGCCTTCAGACGCTGGCTGGGCCAGGACTACATGTTTGTGAAGGAATTTGTTGCGTTTCTAGCTAGTGTACTGCTCAAGTGTTGCAGACAGTCAGATGGCTCGGACATGGAAATAATACTCGGTGGCTTAGCTTCCCTTAGTGAT-GAGCTCTCTTGGTTCAAGAAGGAAGCT-GAAAAATGGAGT-GTTAATCTAGCTGAAGTTTCTCCTCTGAAATCCAATACAGAATAC-T-GCAGGTT-TCTCCAAAGC-TTCAGCG-AGCCAGAGATCAGCTACG-TTGTTGCCATAACTACCTTTT-GGATAATTGAAACCGTGTACCAGGATAGC-TTTGCTTTCTG-TATAGAAGAAGGCAACAAGACGCCACCTGAACTCCTGGGGACCTGCCAGAGATGGGGAAGCCCTGAGTTCAAGCAGTACTGCCAGTCTCTGCAGAGAATTGCAGATCGCTGCCTCGCAGAAGCGTCAGCTGA-TGCTGCG-AGGAGTGCTG-AAGAGGCCTTCCTTCGGGTGCTTGAGCTGGAAATTGGTTTCTGGGA-CATGAGCTCTTCTCGATCATGAACGGCAA-CAGCATCTCGATCATGAACTACTTGGGAGAAATAATCGAATAATGGTGCAGCCGGTTCCATACCGAACCCTGCAGTGTACTACTGTGTTTTCCTCTTCCTTTTATCCCCATTTCTCTCCTTACTCCCATGAACATTGATGTATCATCGTAACTATGAAATAAATGAAATAATGCCGTTTCCTCCTNATCAAAAA] [+] EMBL AK073626 [GAGCTGATCAGCTGAACAGAACTGCCCCCAAGACTTGTGGAGTTGTAGCGAAGCTGCAAG AGTGACGCGGCGGCGGCGATGGACGGCGGCGGGGTCGAGGCGGCGATGGACGGCGGCGGGGTCGAGGCGGCGACGACGGCGGCGTGGATGGCGCGGCACCGGGGGATGTACGAGCGGGCCACGAGGCACCCGTTCACCGTCTCCATCCGCGACGGCACCGTCGACCTGTCCGCCTTCAGACGCTGGCTGGGCCAGGACTACATGTTTGTGAAGGAATTTGTTGCGTTTCTAGCTAGTGTACTGCTCAAGTGTTGCAGACAGTCAGATGGCTCGGACATGGAAATAATACTCGGTGGCTTAGCTTCCCTTAGTGAT GAGCTCTCTTGGTTCAAGAAGGAAGCT GAAAAATGGAGT GTTAATCTAGCTGAAGTTTCTCCTCTGAAATCCAATACAGAATAC T GCAGGTT TCTCCAAAGC TTCAGCG AGCCAGAGATCAGCTACG TTGTTGCCATAACTACCTTTT GGATAATTGAAACCGTGTACCAGGATAGC TTTGCTTTCTG TATAGAAGAAGGCAACAAGACGCCACCTGAACTCCTGGGGACCTGCCAGAGATGGGGAAGCCCTGAGTTCAAGCAGTACTGCCAGTCTCTGCAGAGAATTGCAGATCGCTGCCTCGCAGAAGCGTCAGCTGA TGCTGCG AGGAGTGCTG AAGAGGCCTTCCTTCGGGTGCTTGAGCTGGAAATTGGTTTCTGGGA CATGAGCTCTTCTCGATCATGAACGGCAA CAGCATCTCGATCATGAACTACTTGGGAGAAATAATCGAATAATGGTGCAGCCGGTTCCATACCGAACCCTGCAGTGTACTACTGTGTTTTCCTCTTCCTTTTATCCCCATTTCTCTCCTTACTCCCATGAACATTGATGTATCATCGTAACTATGAAATAAATGAAATAATGCC ] [+] EMBL AU162647 [ CTGAACAGAACTGCCCCCAAGACTTGTGGAGTTGTAGCGAA CTGCAAG AGTGACGCGGCGGCGGCGATGGACGGCGGCGGGGTCGAGGCGGCGATGGACGGCGGCGGGGTCGAGGCGGCGACGACGGCGGCGTGGATGGCGCGGCACCGGGGGATGTACGAGCGGGCCACGAGGCACCCGTTCACCGTCTCCATCCGCGACGGCACCGTCGACCTGTCCGCCTTCAGACGCTGGCTGGGCCAGGACTACATGTTTGTGAAGGAATTTGTTGCGTTTCTAGCTAGTGTACTGCTCAAGTGTTGCAGACAGTCAGATGGCTCGGACATGGAAATAATACTCGGTGGCTTAGCTTCCCTTAGTGATGGAGCTCTCTTGGTTCAAGAAGGAAGCT GAAAAATGGAGT GTTAATCTAGCTGAAGTTTCTCCTCTGAAATCCAATACAGAATAC T GCAGGTT TCTCCAAAGC TTCAGCG AGCCAGAGATCAGCTACG TTGTTGCCATAACTACCTTTT GGATAATTGAAACCGTGTACCAGGATAGC TTTGCTTTCTG TATAGANGAAGGCAACAAGACGCCACCNGAACTCCTGGGGA CTGCCAGAGATGGGGAAG CNTGAGTTCAAGCAGTACTGCCAG NTCTGCAGAGAATTGNAGATCGCTGCCTC ] [+] EMBL AU095631 [ CTGAACAGAACTGCCCCCAAGACTTGTGGAGTTGTAGCGAA CTGCAAG AGTGACGCGGCGGCGGCGATGGACGGCGGCGGGGTCGAGGCGGCGATGGACGGCGGCGGGGTCGAGGCGGCGACGACGGCGGCGTGGATGGCGCGGCACCGGGGGATGTACGANCGGGCCACGAGGCACCCGTTCACCGTCTCCATCCGCGACGGCACCGTCGACCTGTCCGCCTTCAGACGCTGGCTGGGCCAGGACTACATGTTTGTGAAGGAATTTGTTGCGTTTCTAGCTAGTGTACTGCTCAAGTGTTGCAGACAGTCAGATGGCTCGGACATGGAAATAATACTCGGTGGCTTAGCTTCCCTTAGTGAT GAGCTCTCTTGGTTCAAGAAGGAAGCTGGAAAAATGGAGTGGTTAATCTAGCTGAAGTNTCTCCTCNGAAATCCAATACAGAATACTT GCAGGTTGTCTCCAAAGCTTTCAGCGAAGCCAGANATCAGCTACGTTTGTTGCCATAACTACCTTTTGGGATAATTTGAACCGTGTACCAGGATAGCTTTTGCTTTCTGNTATA ] [+] EMBL AU164858 [ GACTTGTGGAGTTGTAGCG A CTGCAAGNAGTGACGCGGCGGCGGCGATGGACGGCGGCGGGGTCGAGGCGGCGATGGACGGCGGCGGGGTCGAGGCGGCGACGACGGCGGCGTGGATGGCGCGGCACCGGGGGATGTACGAGCGGGCCACGAGGCACCCGTTCACCGTCTCCATCCGCGACGGCACCGTCGACCTGTCCGCCTTCAGACGCTGGCTGGGCCAGGACTACATGTTTGTGAAGGAATTTGTTGCGTTTCTAGCTAGTGTACTGCTCAAGTGTTGCAGACAGTCAGATGGCTCGGACATGGAAATAATACTCGGTGGCTTAGCTTCCCTTAGTGAT GAGCTCTCTTGGTTCAAGAAGGAAGCT GAAAAATGGAGT GTTAATCTAGCTGAAGTTTCTCCTCTGAAATCCAATACAGAATAC TGGCAGGTT TCTCCAAAGC TTCAGCG AGCCAGAGATCAGCTACG TTGTTGCCATAACTACCTTTT GGATAATTGAAACCGTGTACCAGGATAGC TTT CTTTCTG TATAGAAGAAGGCAACAAGACGCCACCTGAACTCCTGGGGACCTGCCAGAGATGGGGAAGCCCTGAGTTCAAGCAGTACTG CAGTCTCTGCAGAGAATTGCAGATCGCTGCCTCGCAGAAGCGTCA CTGAGTGCTGCGAAGGAGTGCTGAAAGAGGCCTTCCTTCGGGTGCTT ] [+] EMBL AK063807 [ AGTCAGATGGCTCGGACATGGAAATAATACTCGGTGGCTTAGCTTCCCTTAGTGAT GAGCTCTCTTGGTTCAAGAAGGAAGCT GAAAAATGGAGT GTTAATCTAGCTGAAGTTTCTCCTCTGAAATCCAATACAGAATAC T GCAGGTT TCTCCAAAGC TTCAGCG AGCCAGAGATCAGCTACG TTGTTGCCATAACTACCTTTT GGATAATTGAAACCGTGTACCAGGATAGC TTTGCTTTCTG TATAGAAGAAGGCAACAAGACGCCACCTGAACTCCTGGGGACCTGCCAGAGATGGGGAAGCCCTGAGTTCAAGCAGTACTGCCAGTCTCTGCAGAGAATTGCAGATCGCTGCCTCGCAGAAGCGTCAGCTGA TGCTGCG AGGAGTGCTG AAGAGGCCTTCCTTCGGGTGCTTGAGCTGGAAATTGGTTTCTGGGA CATGAGCTCTTCTCGATCATGAACGGCAA CAGCATCTCGATCATGAACTACTTGGGAGAAATAATCGAATAATGGTGCAGCCGGTTCCATACCGAACCCTGCAGTGTACTACTGTGTTTTCCTCTTCCTTTTATCCCCATTTCTCTCCTTACTCCCATGAACATTGATGTATCATCGTAACTATGAAATAAATGAAATAATGCCGTTT ] [-] EMBL BI305554 [ CCCTTAGTGAT GAGCTCTCTTGGTTCAAGAAGGAAGCT GAAAAATGGAGT GTTAATCTAGCTGAAGTTTCTCCTCTGAAATCCAATACAGAATAC T GCAGGTT TCTCCANAGC TTCAGCG AGCCAGAGATCAGCTACG TTGTTGCCATAACTACCTTTT GGATAATTGAAACCGTGTACCAGGATAGC TTTGCTTTCTG TATAGAAGAAGGCAACAAGACGCCACCTGAACTCCTGGGGACCTGCCAGAGATGGGGAAGCCCTGAGTTCAAGCAGTACTGCCAGTCTCTGCAGAGAATTGCAGATCGCTGCCTCGCAGAAGCGTCAGCTGA TGCTGCG AGGAGTGCTG AAGAGGCCTTCCTTCGGGTGCTTGAGCTGGAAATTGGTTTCTGGGA CATGAGCTCTTCTCGATCATGAACGGCAA CAGCATCTCGATCATGAACTACTTGGGAGAAATAATCGAATAATGGTGCAGCCGGTTCCATACCGAACCCTGCAGTGTACTACTGTGTTTTCCTCTTCCTTTTATCCCCATTTCTCTCCTTACTCCCATGAACATTGATGTATCATCGTAACTATGAAATAAATGAAATAATGCCG ] [+] EMBL AU056054 [ CAGAAGCGTCAGCTGA TGCTGCG AGGNGTGCTG AAGAGGCCTTCCTTCGGGTGCTTGAGCTGGAAATTGGTTTCTGGGA CATGAGCTCTTCTCGATCATGAACGGCAA CAGCATCTCGATCATGAACTACTTGGGAGAAATAATCGAATAATGGTGCAGCCGGTTCCATACCGAACCCTGCAGTGTACTACTGTGTTTTCCTCTTCCTTTTATCCCCATTTCTCTCCTTACTCCCATGAACATTGATGTATCATCGTAACTATGAAATAAATGAAATAATGCCGTTTCCTCCTNATCAAAAA] [+] EMBL AU056053 [ CG AGGAGTNCTG AAGAGGCCTNCTTTCGGGTGCNTGAGCTGGAAATTGGTTTCTGGGACCATGAGNTCTTCTCGATCATGAACGGCAACCAGCATCTCGATCATGANCTACTTGGGAGANATAATCGAATAATGGTGCAGCCGGTTCCATACCGAACCCTGCAGTGTACTACTGTGTTTTCCTCTTCCTTTTATCCCCATTTCTCTCCTTACTCCCATGAACATTGATGTATCATCGTAACTATGAAATAAATGAAATAATGCCGTTTCCTCNTNATCAAAAA] clustalw multiple alignements is not computed in this case |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||