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Oryza sativa
cluster # 10987 cluster # 10987       Sequences # 8       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_10987#0 length = 1371 sequences # 4  
consensus_10987#1 length = 958 sequences # 2  
consensus_10987#2 length = 852 sequences # 1  
consensus_10987#3 length = 694 sequences # 1  

consensusID : consensus_10987#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1371
fasta sequence
                              [GCCTCGCACCTCGCACCGCTCGCGCCGCCCCTCGCCGTCGCCCGTCGCCGGCGCCGGCCGCCCTTCCCCTGTCCGGCGCGGCGCGGCGCGAGGGCTGTGCCAGGAGAGGCCGCCCCAGCACAAGTAGTAGGAGGCCAACCTTGGGCTTGTTCGTACCTGCCGCATCCACCAGGCCAACCAACCCCTCTCCCGGTCGCGCGGTCGCCGGGTCGTGCCGCGTCCACGCCGGCGCGCCGCCTCGCTGCTTCGGCCCCTCCACGCGCGGCGCCGGCGGCCCGCTCTAAGGTGTCTCGGCGCCTCCAGCCGAGTAGCCCTCCAGTCCATGCGCCAGCGGCGCCGTCCGGAGCTCCAGACGAAGCCCGACGGACGAAGTTAAAAATCCTGGGCCCATCCCTGGGCGCGTGTCGTGGTGCGGGCGCTGCTCAGCGTAGGCTGCGTCAAGGGCGGGCGCTGGGGGCAACGACTGGCGGCACCGCATGCCAGGCAGGCAGCAGGCAGCAAGTGAGACCATGGAACAAGAACGGAAAGGAGAAGTTTCCATTGGCATGTATACTTACAATCATAATTCTGACAGTGGGTTTGATGTCCATGAAATCTATGTTAAGAGGAGCAGATTCTGGGTTCTGTTGTCATACATTGGCATGGTTTTCCTTCTCGCAAGTGTCTGCCAACTGTATCTGTCAAAGGAAGGCCTATCCACTGGTTCAGTGTGGAGTATTGCCTTTGGAATCCTTGTTGCCAAATGTTTGCAATACAAACCTGTGAAGAAAGAGTCAGTGGTGATAATGCCAACTTTTGGGGTTCAGCTAGAAATACATTTTTGGAGTGGAAGAGTTCATCGTCGTTTTGTGCCAATTGGCAAGATTCTGAAGCCATTGCTGAATGAGTGTGTGACGCCGGTGACCTGTTACTGGAGCTTGGCATTGCTTCTGCGTGATGAAGAGGAACTCAGGCTAGTTTTCCAGAAATCCCACCCTCCTGTCAAAATGTTGGTTCCTGTCTGGAAGGCTCTCTGCAAATTCCTAAACTCTGGATGCCAAACCAGTTCTGCAGTTTCTGAACCGAACCGTTCGGAAACATGACCAATTTTGTGCTCAATATAGTTTGATTGCAATATTGAGAAAACCAGCTACAATTCAGATAGGAATAGCTAGGTGCATTTTATTTGGAACTATCT-GGTGGGGGTTGTAGGACACGCTAATGCAAGTGGCACATCTTATTGGAAGGAAATACGTGGAGAAATTTTCAAGCTGATGCACTTCACTTCACTTAACAGTGTAACCAATCAATAGTTTACCCTATTCATGATGTAAATTATGATCTCATTTGATCATTTCATTATACGATGATAAAGAGTAACATTGTTCTGCT]

[+] EMBL AK105515             [GCCTCGCACCTCGCACCGCTCGCGCCGCCCCTCGCCGTCGCCCGTCGCCGGCGCCGGCCGCCCTTCCCCTGTCCGGCGCGGCGCGGCGCGAGGGCTGTGCCAGGAGAGGCCGCCCCAGCACAAGTAGTAGGAGGCCAACCTTGGGCTTGTTCGTACCTGCCGCATCCACCAGGCCAACCAACCCCTCTCCCGGTCGCGCGGTCGCCGGGTCGTGCCGCGTCCACGCCGGCGCGCCGCCTCGCTGCTTCGGCCCCTCCACGCGCGGCGCCGGCGGCCCGCTCTAAGGTGTCTCGGCGCCTCCAGCCGAGTAGCCCTCCAGTCCATGCGCCAGCGGCGCCGTCCGGAGCTCCAGACGAAGCCCGACGGACGAAGTTAAAAATCCTGGGCCCATCCCTGGGCGCGTGTCGTGGTGCGGGCGCTGCTCAGCGTAGGCTGCGTCAAGGGCGGGCGCTGGGGGCAACGACTGGCGGCACCGCATGCCAGGCAGGCAGCAGGCAGCAAGTGAGACCATGGAACAAGAACGGAAAGGAGAAGTTTCCATTGGCATGTATACTTACAATCATAATTCTGACAGTGGGTTTGATGTCCATGAAATCTATGTTAAGAGGAGCAGATTCTGGGTTCTGTTGTCATACATTGGCATGGTTTTCCTTCTCGCAAGTGTCTGCCAACTGTATCTGTCAAAGGAAGGCCTATCCACTGGTTCAGTGTGGAGTATTGCCTTTGGAATCCTTGTTGCCAAATGTTTGCAATACAAACCTGTGAAGAAAGAGTCAGTGGTGATAATGCCAACTTTTGGGGTTCAGCTAGAAATACATTTTTGGAGTGGAAGAGTTCATCGTCGTTTTGTGCCAATTGGCAAGATTCTGAAGCCATTGCTGAATGAGTGTGTGACGCCGGTGACCTGTTACTGGAGCTTGGCATTGCTTCTGCGTGATGAAGAGGAACTCAGGCTAGTTTTCCAGAAATCCCACCCTCCTGTCAAAATGTTGGTTCCTGTCTGGAAGGCTCTCTGCAAATTCCTAAACTCTGGATGCCAAACCAGTTCTGCAGTTTCTGAACCGAACCGTTCGGAAACATGACCAATTTTGTGCTCAATATAGTTTGATTGCAATATTGAGAAAACCAGCTACAATTCAGATAGGAATAGCTAGGTGCATTTTATTTGGAACTATCT GGTGGGGGTTGTAGGACACGCTAATGCAAGTGGCACATCTTATTGGAAGGAAATACGTGGAGAAATTTTCAAGCTGATGCACTTCACTTCACTTAACAGTGTAACCAATCAATAGTTTACCCTATTCATGATGTAAATTATGATCTCATTTGATCATTTCATTATACGATGATAAAGAGTAACATTGTTCTGCT]
[+] EMBL CB673766             [                    CGCGCCGCCCCTCGCCGTCGCCCGTCGCCGGCGCCGGCCGCCCTTCCCCTGTCCGGCGCGGCGCGGCGCGAGGGCTGTGCCAGGAGAGGCCGCCCCAGCACAAGTAGTAGGAGGCCAACCTTGGGCTTGTTCGTACCTGCCGCATCCACCAGGCCAACCAACCCCTCTCCCGGTCGCGCGGTCGCCGGGTCGTGCCGCGTCCACGCCGGCGCGCCGCCTCGCTGCTTCGGCCCCTCCACGCGCGGCGCCGGCGGCCCGCTCTAAGGTGTCTCGGCGCCTCCAGCCGAGTAGCCCTCCAGTCCATGCGCCAGCGGCGCCGTCCGGAGCTCCAGACGAAGCCCGACGGACGAAGTTAAAAATCCTGGGCCCATCCCTGGGCGCGTGTCGTGGTGCGGGCGCTGCTCAGCGTAGGCTGCGTCAAGGGCGGGCGCTGGGGGCAACGACTGGCGGCACCGCATGCCAGGCAGGCAGCAGGCAGCAAGTGAGACCATGGAACAAGAACGGAAAGGAGAAGTTTCCATTGGCATGTATACTTACAATCATAATTCTGACAGTGGGTTTGATGTCCATGAAATCTATGTTAAGAGGAGCAGATTCTGGGTTCTGTTGTCATACATTGGCATGGTTTTCCTTCTCGCAAGTGTCTGCCAACTGTATCTGTCAAAGGAAGGCCTATCCACTGGTTCAGTGTGGAGTATTGCCTTTGGAATCCTTGTTGCCAAATGTTTGCAATACAAACCTGTGAAGAAAGAGTCAGTGGTGATAATGCCAACTNTTGGGGTTCAGCTAGAAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL CB660832             [                                                                                                                                                                                                                                                                                                                                                                                                                  TGTCGTGGTGCGGGCGCTGCTCAGCGTAGGCTGCGTCAAGGGCGGGCGCTGGGGGCAACGACTGGCGGCACCGCATGCCAGGCAGGCAGCAGGCAGCAAGTGAGACCATGGAACAAGAACGGAAAGGAGAAGTTTCCATTGGCATGTATACTTACAATCATAATTCTGACAGTGGGTTTGATGTCCATGAAATCTATGTTAAGAGGAGCAGATTCTGGGTTCTGTTGTCATACATTGGCATGGTTTTCCTTCTCGCAAGTGTCTGCCAACTGTATCTGTCA    AAGGCCTATCCACTGGTTCAGTGTGGAGTATTGCCTTTGGAATCCTTGTTGCCAAATGTTTGCAATACAAACCTGTGAAGAAAGAGTCAGTGGTGATAATGCCAACTTTTGGGGTTCAGCTAGAAATACATTTTTGGAGTGGAAGAGTTCATCGTCGTTTTGTGCCAATTGGCAAGATTCTGAAGCCATTGCTGAATGAGTGTGTGACGCCGGTGACCTGTTACTGGAGCTTGGCATTGCTTCTGCGTGATGAAGAGGAACTCAGGCTAGTTTTCCAGAAATCCCACCCTCCTGTCAAAATGTTGGTTCCTGTCTGGAAGGCTCTCTGCAAATTCCTAAACTCTGGATGCCAAACCAGTTCTGCAGTTTCTGAACCGAACCGTTCGGAAACATGACCAATTTTGTGCTCAATATAGTTTGATTGCAATATTGAGAAAACCAGCTACAATTCAGATAGGAATAGCTAGGTGCATTTTATTTGGAACTATCTNGGTGGGGG TGTAGGACACGCTAATGCAAGTGGCACATCTTATTGGAAGGAAATACGTGGAGAAATTTTCAAGCTGATGCACTTCAC                                                                                                           ]
[+] EMBL CB660831             [                                                                                                                                                                                                                                                                                                                                                                                                                  TGTCGTGGTGCGGGCGCTGCTCAGCGTAGGCCGCGTCAAGGGCGGGCGCTGGGGGCAACGACTGGCGGCACCGCATGCCAGGCAGGCAGCAGGCAGCAAGTGAGACCATGGAACAAGAACGGAAAGGAGAAGTTTCCATTGGCATGTATACTTACAATCATAATTCTGACAGTGGGTTTGATGTCCATGAAATCTATGTTAAGAGGAGCAGATTCTGGGTTCTGTTGTCATACATTGGCATGGTTTTCCTTCTCGCAAGTGTCTGCCAACTGTATCTGTCA    AAGGCCTATCCACTGGTTCAGTGTGGAGTATTGCCTTTGGAATCCTTGTTGCCAAATGTTTGCAATACAAACCTGTGAAGAAAGAGTCAGTGGTGATAATGCCAACTTTTGGGGTTCAGCTAGAAATACATTTTTGGAGTGGAAGAGTTCATCGTCGTTTTGTGCCAATTGGCAAGATTCTGAAGCCATTGCTGAATGAGTGTGTGACGCCGGTGACCTGTTACTGGAGCTTGGCATTGCTTCTGCGTGATGAAGAGGAACTCAGGCTAGTTTTCCAGAAATCCCACCCTCCTGTCAAAATGTTGGTTCCTGTCTGGAAGGCTCTCTGCAAATTCCTAAACTCTGGATGCCAAACCAGTTCTGCAGTTTCTGAACCGAACCGTTCGGAAACATGACCAATTTTGTGCTCAATATAGTTTGATTGCAATATTGAGAAAACCAGCTACAATTCAGATAGGAATAGCTAGGTGCATTTTATTTGGAACTATCT GGTGGGGGTTGTAGGACACGCTAATGCAAGTGG                                                                                                                                                                 ]


>consensus_10987#0 GCCTCGCACCTCGCACCGCTCGCGCCGCCCCTCGCCGTCGCCCGTCGCCGGCGCCGGCCG CCCTTCCCCTGTCCGGCGCGGCGCGGCGCGAGGGCTGTGCCAGGAGAGGCCGCCCCAGCA CAAGTAGTAGGAGGCCAACCTTGGGCTTGTTCGTACCTGCCGCATCCACCAGGCCAACCA ACCCCTCTCCCGGTCGCGCGGTCGCCGGGTCGTGCCGCGTCCACGCCGGCGCGCCGCCTC GCTGCTTCGGCCCCTCCACGCGCGGCGCCGGCGGCCCGCTCTAAGGTGTCTCGGCGCCTC CAGCCGAGTAGCCCTCCAGTCCATGCGCCAGCGGCGCCGTCCGGAGCTCCAGACGAAGCC CGACGGACGAAGTTAAAAATCCTGGGCCCATCCCTGGGCGCGTGTCGTGGTGCGGGCGCT GCTCAGCGTAGGCTGCGTCAAGGGCGGGCGCTGGGGGCAACGACTGGCGGCACCGCATGC CAGGCAGGCAGCAGGCAGCAAGTGAGACCATGGAACAAGAACGGAAAGGAGAAGTTTCCA TTGGCATGTATACTTACAATCATAATTCTGACAGTGGGTTTGATGTCCATGAAATCTATG TTAAGAGGAGCAGATTCTGGGTTCTGTTGTCATACATTGGCATGGTTTTCCTTCTCGCAA GTGTCTGCCAACTGTATCTGTCAAAGGAAGGCCTATCCACTGGTTCAGTGTGGAGTATTG CCTTTGGAATCCTTGTTGCCAAATGTTTGCAATACAAACCTGTGAAGAAAGAGTCAGTGG TGATAATGCCAACTTTTGGGGTTCAGCTAGAAATACATTTTTGGAGTGGAAGAGTTCATC GTCGTTTTGTGCCAATTGGCAAGATTCTGAAGCCATTGCTGAATGAGTGTGTGACGCCGG TGACCTGTTACTGGAGCTTGGCATTGCTTCTGCGTGATGAAGAGGAACTCAGGCTAGTTT TCCAGAAATCCCACCCTCCTGTCAAAATGTTGGTTCCTGTCTGGAAGGCTCTCTGCAAAT TCCTAAACTCTGGATGCCAAACCAGTTCTGCAGTTTCTGAACCGAACCGTTCGGAAACAT GACCAATTTTGTGCTCAATATAGTTTGATTGCAATATTGAGAAAACCAGCTACAATTCAG ATAGGAATAGCTAGGTGCATTTTATTTGGAACTATCTGGTGGGGGTTGTAGGACACGCTA ATGCAAGTGGCACATCTTATTGGAAGGAAATACGTGGAGAAATTTTCAAGCTGATGCACT TCACTTCACTTAACAGTGTAACCAATCAATAGTTTACCCTATTCATGATGTAAATTATGA TCTCATTTGATCATTTCATTATACGATGATAAAGAGTAACATTGTTCTGCT



consensusID : consensus_10987#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 958
fasta sequence
                              [TTCTAGCAAGNCGAATAGTTGTTGTATAGTAACCCCCTCCTGAGGAAACAGCTGTTAGGTTATGAAGGTTGNTTNTGACAACGAAATAGGACAACAATGCTGTTCTCTATGATTCACTGGCTAGCGGCTACTCTCGATTATGAGTAATGATTGATATATGCATCTACAATATGTTCCGGGNTAAACAGTTATCTTTTGGAGAATCATACGAGAAATGGATTTATATTACCATTATATCAANATGAAGTTATCAAGTATATTTACCATGNTTGTTCACATCTTATTCATCATTTGCTCTGAGGCTTTCTGGGAGACATTACTTTCTTTGCTTAGAAAATGGTGGACTACTTAACCTTTGGTAACAGATGTTGGTTNGNAGAATTAAAATTTGCAAGTTCTGATTCTTAGTGGAAGAGTTCATCGNCGATTTGTGCCAATTGGCAAGATTCTGAAGCCATTGCTGAATGAGTGTGTGACGCCGGNGACCTGATACTGGAGCTTGGCATTGCTTCTGCGTGATGAAGAGGAACTCAGGCTAGNTTTCCAGAAATCCCACCCTCCTGTCAAAATGTTGGTTCCTGTCTGGGAGGGCTCTCTGCAAATTCCTAAATTCTGGATGCCAAACCAGTTCTGCAGTTTCTGAACCGAACCGTTCGGAAACATGACCAATTTTGGGCTCAATATAGGTTGGATTGCAATATTGAGAAAACCAGCTACAATTCANATAGGAATAGCTAGGTGCATTTTATTTGGGACTATCTGGNGGGGGGTTGTAAGACACGCTAATGCCAGNGGCNCATCTTANTGGAAGGAAATACGTGGAGAAATTTTCAAGCTGATGCACTTCACTTCACTTAACAGTGTAACCAATCAATAGTTTACCCTATTCATGATGTAAATTATGATCTCATTTGATCATTTCATTATACGATGATAAAGAGTAACATTGTTCTGCTAA]

[+] EMBL CA765223             [TTCTAGCAAGNCGAATAGTTGTTGTATAGTAACCCCCTCCTGAGGAAACAGCTGTTAGGTTATGAAGGTTGNTTNTGACAACGAAATAGGACAACAATGCTGTTCTCTATGATTCACTGGCTAGCGGCTACTCTCGATTATGAGTAATGATTGATATATGCATCTACAATATGTTCCGGGNTAAACAGTTATCTTTTGGAGAATCATACGAGAAATGGATTTATATTACCATTATATCAANATGAAGTTATCAAGTATATTTACCATGNTTGTTCACATCTTATTCATCATTTGCTCTGAGGCTTTCTGGGAGACATTACTTTCTTTGCTTAGAAAATGGTGGACTACTTAACCTTTGGTAACAGATGTTGGTTNGNAGAATTAAAATTTGCAAGTTCTGATTCTTAGTGGAAGAGTTCATCGNCGATTTGTGCCAATTGGCAAGATTCTGAAGCCATTGCTGAATGAGTGTGTGACGCCGGNGACCTGATACTGGAGCTTGGCATTGCTTCTGCGTGATGAAGAGGAACTCAGGCTAGNTTTCCAGAAATCCCACCCTCCTGTCAAAATGTTGGTTCCTGTCTGGGAGGGCTCTCTGCAAATTCCTAAATTCTGGATGCCAAACCAGTTCTGCAGTTTCTGAACCGAACCGTTCGGAAACATGACCAATTTTGGGCTCAATATAGGTTGGATTGCAATATTGAGAAAACCAGCTACAATTCANATAGGAATAGCTAGGTGCATTTTATTTGGGACTATCTGGNGGGGGGTTGTAAGACACGCTAATGCCAGNGGCNCATCTTANTGG                                                                                                                                                      ]
[-] EMBL CB673767             [                                                                                                                                                   TGATTGATATATGCATCTACAATATGTTCCGGGTTAAACAGTTATCTTTTGGAGAATCATACGAGAAATGGATTTATATTACCATTATATCAATATGAAGTTATCAAGTATATTTACCATGTTTGTTCACATCTTATTCATCATTTGCTCTGAGGTTTTCTGGGAGACATTACTTTCTTTGCTTAGAAAATGGTGGACTACTTAACCTTTGGTAACAGATGTTGGTTTGTAGAATTAAAATTTGCAAGTTCTGATTCTTAGTGGAAGAGTTCATCGTCGTTTTGTGCCAATTGGCAAGATTCTGAAGCCATTGCTGAATGAGTGTGTGACGCCGGTGACCTGTTACTGGAGCTTGGCATTGCTTCTGCGTGATGAAGAGGAACTCAGGCTAGTTTTCCAGAAATCCCACCCTCCTGTCAAAATGTTGGTTCCTGTCT GGAAGGCTCTCTGCAAATTCCTAAACTCTGGATGCCAAACCAGTTCTGCAGTTTCTGAACCGAACCGTTCGGAAACATGACCAATTTTGTGCTCAATATA GTTTGATTGCAATATTGAGAAAACCAGCTACAATTCAGATAGGAATAGCTAGGTGCATTTTATTTGGAACTATCTGG TGGGGGTTGTAGGACACGCTAATGCAAGTGGCACATCTTATTGGAAGGAAATACGTGGAGAAATTTTCAAGCTGATGCACTTCACTTCACTTAACAGTGTAACCAATCAATAGTTTACCCTATTCATGATGTAAATTATGATCTCATTTGATCATTTCATTATACGATGATAAAGAGTAACATTGTTCTGCTAA]


>consensus_10987#1 TTCTAGCAAGNCGAATAGTTGTTGTATAGTAACCCCCTCCTGAGGAAACAGCTGTTAGGT TATGAAGGTTGNTTNTGACAACGAAATAGGACAACAATGCTGTTCTCTATGATTCACTGG CTAGCGGCTACTCTCGATTATGAGTAATGATTGATATATGCATCTACAATATGTTCCGGG NTAAACAGTTATCTTTTGGAGAATCATACGAGAAATGGATTTATATTACCATTATATCAA NATGAAGTTATCAAGTATATTTACCATGNTTGTTCACATCTTATTCATCATTTGCTCTGA GGCTTTCTGGGAGACATTACTTTCTTTGCTTAGAAAATGGTGGACTACTTAACCTTTGGT AACAGATGTTGGTTNGNAGAATTAAAATTTGCAAGTTCTGATTCTTAGTGGAAGAGTTCA TCGNCGATTTGTGCCAATTGGCAAGATTCTGAAGCCATTGCTGAATGAGTGTGTGACGCC GGNGACCTGATACTGGAGCTTGGCATTGCTTCTGCGTGATGAAGAGGAACTCAGGCTAGN TTTCCAGAAATCCCACCCTCCTGTCAAAATGTTGGTTCCTGTCTGGGAGGGCTCTCTGCA AATTCCTAAATTCTGGATGCCAAACCAGTTCTGCAGTTTCTGAACCGAACCGTTCGGAAA CATGACCAATTTTGGGCTCAATATAGGTTGGATTGCAATATTGAGAAAACCAGCTACAAT TCANATAGGAATAGCTAGGTGCATTTTATTTGGGACTATCTGGNGGGGGGTTGTAAGACA CGCTAATGCCAGNGGCNCATCTTANTGGAAGGAAATACGTGGAGAAATTTTCAAGCTGAT GCACTTCACTTCACTTAACAGTGTAACCAATCAATAGTTTACCCTATTCATGATGTAAAT TATGATCTCATTTGATCATTTCATTATACGATGATAAAGAGTAACATTGTTCTGCTAA



consensusID : consensus_10987#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 852
fasta sequence
                              [TGGGCGCGTGTCGTGGTGCGGGCGCTGCTCAGCGTAGGCTGCGTCAAGGGCGGGCGCTGGGGGCAACGACTGGCGGCACCGCATGCCAGGCAGGCAGCAGGCAGCAAGTGAGACCATGGAACAAGAACGGAAAGGAGAAGTTTCCATTGGCATGTATACTTACAATCATAATTCTGACAGTGGGTTTGATGTCCATGAAATCTATGTTAAGAGGAGCAGATTCTGGGTTCTGTTGTCATACATTGGCATGGTTTTCCTTCTCGCAAGTGTCTGCCAACTGTATCTGTCAAAGGTACACTTCTCACATAAATCAGTTCCCACATGTTGGTAGGAGGGTTTGTCAGCGAGATTTTTATCTGATATTTCAAGAGTGTCCTAGTGAAAATTACCCGGTTCCTTATCTAATGGTTAGGTTCCATGGTTCATCATATTGTAGATAAAGCTGCAAAATGTTTACTATTTTTGTAGAGCCTTTTTTTTTTCACATGTTTCCCTTATTCAGAACAGATTCATATTTGCACACTCATACTGTTTTTGTGGCTTTGTTGACCATCCTTGTGACGAGGTTCTTAGTACCCTAGAATCTTAGTTGTAATGTTCTGAAACGCATTACCTTTCTGTTTATACTTATCATAACTGATGTTTATGTTGGTATTGACTTGCTTCAATATTGAAGGAAGGCCTATCCACTGGTTCAGTGTGGAGTATTGCCTTTGGAATCCTTGTTGCCAAATGTTTGCAATACAAACCTGTGAAGAAAGGTGAATTTTTCCTCAAATATGTCCTTATGTGGCCTTCTCATATTATAGTACTACCGTATGAACCTTAAGATTACCAGAATAGGATTTCCCC]

[+] EMBL CB662236             [TGGGCGCGTGTCGTGGTGCGGGCGCTGCTCAGCGTAGGCTGCGTCAAGGGCGGGCGCTGGGGGCAACGACTGGCGGCACCGCATGCCAGGCAGGCAGCAGGCAGCAAGTGAGACCATGGAACAAGAACGGAAAGGAGAAGTTTCCATTGGCATGTATACTTACAATCATAATTCTGACAGTGGGTTTGATGTCCATGAAATCTATGTTAAGAGGAGCAGATTCTGGGTTCTGTTGTCATACATTGGCATGGTTTTCCTTCTCGCAAGTGTCTGCCAACTGTATCTGTCAAAGGTACACTTCTCACATAAATCAGTTCCCACATGTTGGTAGGAGGGTTTGTCAGCGAGATTTTTATCTGATATTTCAAGAGTGTCCTAGTGAAAATTACCCGGTTCCTTATCTAATGGTTAGGTTCCATGGTTCATCATATTGTAGATAAAGCTGCAAAATGTTTACTATTTTTGTAGAGCCTTTTTTTTTTCACATGTTTCCCTTATTCAGAACAGATTCATATTTGCACACTCATACTGTTTTTGTGGCTTTGTTGACCATCCTTGTGACGAGGTTCTTAGTACCCTAGAATCTTAGTTGTAATGTTCTGAAACGCATTACCTTTCTGTTTATACTTATCATAACTGATGTTTATGTTGGTATTGACTTGCTTCAATATTGAAGGAAGGCCTATCCACTGGTTCAGTGTGGAGTATTGCCTTTGGAATCCTTGTTGCCAAATGTTTGCAATACAAACCTGTGAAGAAAGGTGAATTTTTCCTCAAATATGTCCTTATGTGGCCTTCTCATATTATAGTACTACCGTATGAACCTTAAGATTACCAGAATAGGATTTCCCC]


>consensus_10987#2 TGGGCGCGTGTCGTGGTGCGGGCGCTGCTCAGCGTAGGCTGCGTCAAGGGCGGGCGCTGG GGGCAACGACTGGCGGCACCGCATGCCAGGCAGGCAGCAGGCAGCAAGTGAGACCATGGA ACAAGAACGGAAAGGAGAAGTTTCCATTGGCATGTATACTTACAATCATAATTCTGACAG TGGGTTTGATGTCCATGAAATCTATGTTAAGAGGAGCAGATTCTGGGTTCTGTTGTCATA CATTGGCATGGTTTTCCTTCTCGCAAGTGTCTGCCAACTGTATCTGTCAAAGGTACACTT CTCACATAAATCAGTTCCCACATGTTGGTAGGAGGGTTTGTCAGCGAGATTTTTATCTGA TATTTCAAGAGTGTCCTAGTGAAAATTACCCGGTTCCTTATCTAATGGTTAGGTTCCATG GTTCATCATATTGTAGATAAAGCTGCAAAATGTTTACTATTTTTGTAGAGCCTTTTTTTT TTCACATGTTTCCCTTATTCAGAACAGATTCATATTTGCACACTCATACTGTTTTTGTGG CTTTGTTGACCATCCTTGTGACGAGGTTCTTAGTACCCTAGAATCTTAGTTGTAATGTTC TGAAACGCATTACCTTTCTGTTTATACTTATCATAACTGATGTTTATGTTGGTATTGACT TGCTTCAATATTGAAGGAAGGCCTATCCACTGGTTCAGTGTGGAGTATTGCCTTTGGAAT CCTTGTTGCCAAATGTTTGCAATACAAACCTGTGAAGAAAGGTGAATTTTTCCTCAAATA TGTCCTTATGTGGCCTTCTCATATTATAGTACTACCGTATGAACCTTAAGATTACCAGAA TAGGATTTCCCC



consensusID : consensus_10987#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 694
fasta sequence
                              [GTTTGCAATACAAACCTGTGAAGAAAGAGTCAGTGGTGTAATGCCAACTTTTGGGGTTCAGCTAGAAATACATTTTTGGAGAATTAAAATTTGCAAGTTCTGATTCTTAGTGGAAGAGTTTATNGTCGTTTTGTGCCAATTGGCAAGATTCTGAAGCCATTGCTGAATGAGTGTGTGACGCCGGTGACCTGTTACTGGAGCTTGGCATTGCTTTTGCGTGATGAAGAGGAACTCAGGCTAGTTTTCCAGAAATCCCACCCTCCTGTCAAAATGTTGGTTCCTGTCTGGAAGGCTCTCTGCAAATTCCTAAATTCTGGATGCCAAACCAGTTTTGCAGTTTTTGAACCGAACCGTTTGGAAACATGACCAATTTTGTGCTCAATATAGTTTGATTGCAATATTGAGAAAACCAGCTACAATTTAGATAGGAATAGCTAGGTGCATTTTATTTGGAACTATCTGGTGGGGGTTGTAGGACACGCTAATGCGAGTGGCACATCTTATTGGAAGGAAATACGTGGAGAAATTTTCAAGCTGATGCACTTCACTTCACTTAACAGTGTAACCAATCAATAGTTTACCCTATTCATGATGTAAATTATGATCTCATTTGATCATTTCATTGTACGATGATAAAGAGTAACATTGTTCTGCTATTACCATTCATGATTTCTGTTAAAAAAAAAAAAAAAAA]

[-] EMBL CA762334             [GTTTGCAATACAAACCTGTGAAGAAAGAGTCAGTGGTGTAATGCCAACTTTTGGGGTTCAGCTAGAAATACATTTTTGGAGAATTAAAATTTGCAAGTTCTGATTCTTAGTGGAAGAGTTTATNGTCGTTTTGTGCCAATTGGCAAGATTCTGAAGCCATTGCTGAATGAGTGTGTGACGCCGGTGACCTGTTACTGGAGCTTGGCATTGCTTTTGCGTGATGAAGAGGAACTCAGGCTAGTTTTCCAGAAATCCCACCCTCCTGTCAAAATGTTGGTTCCTGTCTGGAAGGCTCTCTGCAAATTCCTAAATTCTGGATGCCAAACCAGTTTTGCAGTTTTTGAACCGAACCGTTTGGAAACATGACCAATTTTGTGCTCAATATAGTTTGATTGCAATATTGAGAAAACCAGCTACAATTTAGATAGGAATAGCTAGGTGCATTTTATTTGGAACTATCTGGTGGGGGTTGTAGGACACGCTAATGCGAGTGGCACATCTTATTGGAAGGAAATACGTGGAGAAATTTTCAAGCTGATGCACTTCACTTCACTTAACAGTGTAACCAATCAATAGTTTACCCTATTCATGATGTAAATTATGATCTCATTTGATCATTTCATTGTACGATGATAAAGAGTAACATTGTTCTGCTATTACCATTCATGATTTCTGTTAAAAAAAAAAAAAAAAA]


>consensus_10987#3 GTTTGCAATACAAACCTGTGAAGAAAGAGTCAGTGGTGTAATGCCAACTTTTGGGGTTCA GCTAGAAATACATTTTTGGAGAATTAAAATTTGCAAGTTCTGATTCTTAGTGGAAGAGTT TATNGTCGTTTTGTGCCAATTGGCAAGATTCTGAAGCCATTGCTGAATGAGTGTGTGACG CCGGTGACCTGTTACTGGAGCTTGGCATTGCTTTTGCGTGATGAAGAGGAACTCAGGCTA GTTTTCCAGAAATCCCACCCTCCTGTCAAAATGTTGGTTCCTGTCTGGAAGGCTCTCTGC AAATTCCTAAATTCTGGATGCCAAACCAGTTTTGCAGTTTTTGAACCGAACCGTTTGGAA ACATGACCAATTTTGTGCTCAATATAGTTTGATTGCAATATTGAGAAAACCAGCTACAAT TTAGATAGGAATAGCTAGGTGCATTTTATTTGGAACTATCTGGTGGGGGTTGTAGGACAC GCTAATGCGAGTGGCACATCTTATTGGAAGGAAATACGTGGAGAAATTTTCAAGCTGATG CACTTCACTTCACTTAACAGTGTAACCAATCAATAGTTTACCCTATTCATGATGTAAATT ATGATCTCATTTGATCATTTCATTGTACGATGATAAAGAGTAACATTGTTCTGCTATTAC CATTCATGATTTCTGTTAAAAAAAAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10987#1      ------------------------------------------------------------
consensus_10987#3      ------------------------------------------------------------
consensus_10987#0      GCCTCGCACCTCGCACCGCTCGCGCCGCCCCTCGCCGTCGCCCGTCGCCGGCGCCGGCCG 60
consensus_10987#2      ------------------------------------------------------------
                                                                                   

consensus_10987#1      ------------------------------------------------------------
consensus_10987#3      ------------------------------------------------------------
consensus_10987#0      CCCTTCCCCTGTCCGGCGCGGCGCGGCGCGAGGGCTGTGCCAGGAGAGGCCGCCCCAGCA 120
consensus_10987#2      ------------------------------------------------------------
                                                                                   

consensus_10987#1      ------------------------------------------------------------
consensus_10987#3      ------------------------------------------------------------
consensus_10987#0      CAAGTAGTAGGAGGCCAACCTTGGGCTTGTTCGTACCTGCCGCATCCACCAGGCCAACCA 180
consensus_10987#2      ------------------------------------------------------------
                                                                                   

consensus_10987#1      ------------------------------------------------------------
consensus_10987#3      ------------------------------------------------------------
consensus_10987#0      ACCCCTCTCCCGGTCGCGCGGTCGCCGGGTCGTGCCGCGTCCACGCCGGCGCGCCGCCTC 240
consensus_10987#2      ------------------------------------------------------------
                                                                                   

consensus_10987#1      ------------------------------------------------------------
consensus_10987#3      ------------------------------------------------------------
consensus_10987#0      GCTGCTTCGGCCCCTCCACGCGCGGCGCCGGCGGCCCGCTCTAAGGTGTCTCGGCGCCTC 300
consensus_10987#2      ------------------------------------------------------------
                                                                                   

consensus_10987#1      ------------------------------------------------------------
consensus_10987#3      ------------------------------------------------------------
consensus_10987#0      CAGCCGAGTAGCCCTCCAGTCCATGCGCCAGCGGCGCCGTCCGGAGCTCCAGACGAAGCC 360
consensus_10987#2      ------------------------------------------------------------
                                                                                   

consensus_10987#1      -----------------------------TTCTAGCAAGNCGAATAGTTGTTGTATAGTA 31
consensus_10987#3      ------------------------------------------------------------
consensus_10987#0      CGACGGACGAAGTTAAAAATCCTGGGCCCATCCCTGGGCGCGTGTCGTGGTGCGGGCGCT 420
consensus_10987#2      ----------------------------------TGGGCGCGTGTCGTGGTGCGGGCGCT 26
                                                                                   

consensus_10987#1      ACCCCCTCCTGAGGAAACAGCTGTTAGGTTATGAAGGTTGNTTNTGACAACGAAATAGGA 91
consensus_10987#3      ------------------------------------------------------------
consensus_10987#0      GCTCAGCGTAGGCTGCGTCAAGGGCGGGCGCTGGGGGCAACGACTGGCGGCACCGCATGC 480
consensus_10987#2      GCTCAGCGTAGGCTGCGTCAAGGGCGGGCGCTGGGGGCAACGACTGGCGGCACCGCATGC 86
                                                                                   

consensus_10987#1      CAACAATGCTGTTCTCTATGATTCACTGGCTAGCG-GCTACTCTCGATTATGAGTAATGA 150
consensus_10987#3      ------------------------------------------------------------
consensus_10987#0      CAGGCAGGCAGCAGGCAGCAAGTGAGACCATGGAACAAGAACGGAAAGGAGAAGTTTCCA 540
consensus_10987#2      CAGGCAGGCAGCAGGCAGCAAGTGAGACCATGGAACAAGAACGGAAAGGAGAAGTTTCCA 146
                                                                                   

consensus_10987#1      TTGATATATGCATCTACAATATGTTCCGGGNTAAACAGTTATCTTTTGGAGAATCATACG 210
consensus_10987#3      ------------------------------------------------------------
consensus_10987#0      TTGGCATGTATACTTACAATCATAATTCTGACAGTGGGTTTGATGTCCATGAAATCTATG 600
consensus_10987#2      TTGGCATGTATACTTACAATCATAATTCTGACAGTGGGTTTGATGTCCATGAAATCTATG 206
                                                                                   

consensus_10987#1      AGAAATGGATTTATATTACCATTATATCAANATGAAGTTATCAAGTATATTTAC---CAT 267
consensus_10987#3      ------------------------------------------------------------
consensus_10987#0      TTAAGAGGAGCAGATTCTGGGTTCTGTTGTCATACATTGGCATGGTTTTCCTTCTCGCAA 660
consensus_10987#2      TTAAGAGGAGCAGATTCTGGGTTCTGTTGTCATACATTGGCATGGTTTTCCTTCTCGCAA 266
                                                                                   

consensus_10987#1      GNTTGTTCACATCTTATTCATCA--------TTTGCTCTGAGGCTTTCTGGGAGACATTA 319
consensus_10987#3      ----------------------G--------TTTGCAATACAAACCTGTGAAGAA----A 26
consensus_10987#0      GTGTCTGCCAACTGTATCTGTCAAAGGAAGGCCTATCCACTGGTTCAGTGTGGAGTATTG 720
consensus_10987#2      GTGTCTGCCAACTGTATCTGTCA-------------AAGGTACACTTCTCACATAAATCA 313
                                                                       *           

consensus_10987#1      CTTTC-----TTTGCTTAGAAAATGGTGGACTACTTAACCTTTGGTAACAGATGTTGGTT 374
consensus_10987#3      GAGTC-----AGTGGT---GTAATGCCAACTT--TTGGGGTTCAGCTAGAAATACATTTT 76
consensus_10987#0      CCTTTGGAATCCTTGTTGCCAAATGTTTGCAATACAAACCTGTGAAGAAAGAGTCAGTGG 780
consensus_10987#2      GTTCCCACATGTTGGT--AGGAGGGTTTGTCAGCGAGATTTTTATCTGATATTTCAAGAG 371
                                   *  *     *  *               *                   

consensus_10987#1      NGNAGAATTAAAATTTGCAAGTTCTG----------ATTCTT--AGTGGAAGAGTTCATC 422
consensus_10987#3      TGGAGAATTAAAATTTGCAAGTTCTG----------ATTCTT--AGTGGAAGAGTTTATN 124
consensus_10987#0      TGATAATGCCAACTTTTGGGGTTCAGCTAGAAATACATTTTTGGAGTGGAAGAGTTCATC 840
consensus_10987#2      TGTCCTAGTGAAAATTACCCGGTTCC-----------TTATCT-AATGGTTAGGTTCCAT 419
                        *        **  **    * *              ** *   * ***    ***    

consensus_10987#1      GNCGATTTGTGCCAATTGGCAAGATTCTGAAGCCATTGCTGAATGAGTGTGTGACGCCGG 482
consensus_10987#3      GTCGTTTTGTGCCAATTGGCAAGATTCTGAAGCCATTGCTGAATGAGTGTGTGACGCCGG 184
consensus_10987#0      GTCGTTTTGTGCCAATTGGCAAGATTCTGAAGCCATTGCTGAATGAGTGTGTGACGCCGG 900
consensus_10987#2      GGTTCATCATATTG-TAGATAAAGCTGCAAAA----TGTTTACTATTTTTGTAGAGCCTT 474
                       *     *  *     * *  **   *   **     ** * * *   * ***   ***  

consensus_10987#1      NGACCTGATACTGGAGCTTGGCATTGCTTCTGCGTGATGAAGAGGAACTCAGGCTAGNTT 542
consensus_10987#3      TGACCTGTTACTGGAGCTTGGCATTGCTTTTGCGTGATGAAGAGGAACTCAGGCTAGTTT 244
consensus_10987#0      TGACCTGTTACTGGAGCTTGGCATTGCTTCTGCGTGATGAAGAGGAACTCAGGCTAGTTT 960
consensus_10987#2      TTTTTT-----------TTCACAT-GTTTCC-CTTATTCAGAACAGATTCA---TATTTG 518
                            *           **  *** * **   * *  * *  *   * ***   **  * 

consensus_10987#1      TCCAGAAATCCCACCCTCCTGTCAAAATGTTGGTT-CCTGTCTGGGAGGGCTCTCTGCAA 601
consensus_10987#3      TCCAGAAATCCCACCCTCCTGTCAAAATGTTGGTT-CCTGTCTGGAAGG-CTCTCTGCAA 302
consensus_10987#0      TCCAGAAATCCCACCCTCCTGTCAAAATGTTGGTT-CCTGTCTGGAAGG-CTCTCTGCAA 1018
consensus_10987#2      CACACTCATACTG--TTTTTGTGGCTTTGTTGACCATCCTTGTGACGAGGTTCTTAGTA- 575
                         **   ** *     *  ***     *****     *  * **    *  ***  * * 

consensus_10987#1      ATTCCTAAATTCTGGATGCCAAACCAGTTCTGCAGTTTCTGAACCGAACCGTTCGGA--- 658
consensus_10987#3      ATTCCTAAATTCTGGATGCCAAACCAGTTTTGCAGTTTTTGAACCGAACCGTTTGGA--- 359
consensus_10987#0      ATTCCTAAACTCTGGATGCCAAACCAGTTCTGCAGTTTCTGAACCGAACCGTTCGGA--- 1075
consensus_10987#2      --CCCTAGAATCTTAGTTGTAA---TGTTCTGAAACGCATTA-CCTTTCTGTTTATACTT 629
                          **** * ***   *   **    *** ** *     * * **   * ***   *   

consensus_10987#1      AACATGACCAATTTTGGGCTCAATATAGGTTGGATTGCAATATTGAGAAAACCAGCTACA 718
consensus_10987#3      AACATGACCAATTTTGTGCTCAATATAGTTTG-ATTGCAATATTGAGAAAACCAGCTACA 418
consensus_10987#0      AACATGACCAATTTTGTGCTCAATATAGTTTG-ATTGCAATATTGAGAAAACCAGCTACA 1134
consensus_10987#2      ATCATAACTGATGTTTATGTTGGTATTGACTT-GCTTCAATATTGAAGGAA--GGC--CT 684
                       * *** **  ** **    *   *** *  *    * *********   **   **  * 

consensus_10987#1      ATTCANATAGGAATAGCTAGGTGCATTTTATTTGGGACTATC--TGGNGGGGGGTTGTAA 776
consensus_10987#3      ATTTAGATAGGAATAGCTAGGTGCATTTTATTTGGAACTATC--TGGTGGGGG-TTGTAG 475
consensus_10987#0      ATTCAGATAGGAATAGCTAGGTGCATTTTATTTGGAACTATC--TGGTGGGGG-TTGTAG 1191
consensus_10987#2      ATCCAC--TGGTTCAGTGTGGAGTATTGCCTTTGGAATCCTTGTTGCCAAATGTTTGCAA 742
                       **  *    **   **   ** * ***   ***** *   *   **      * *** * 

consensus_10987#1      GACACGCTAATGC-CAGNGGCNCATCTTANTGGAAGGAAATACGTG-GAGAAATTTTCAA 834
consensus_10987#3      GACACGCTAATGC-GAGTGGCACATCTTATTGGAAGGAAATACGTG-GAGAAATTTTCAA 533
consensus_10987#0      GACACGCTAATGC-AAGTGGCACATCTTATTGGAAGGAAATACGTG-GAGAAATTTTCAA 1249
consensus_10987#2      TACAAACCTGTGAAGAAAGGTGAATTTTTCCTCAAATATGTCCTTATGTGGCCTTCTCAT 802
                        ***  *   **   *  **   ** **     **  *  * * *  * *   ** *** 

consensus_10987#1      GCTGATGCACTTCACTTCACTTAACAGTGTAACCAATCAATAGTTTACCCTATTCATGAT 894
consensus_10987#3      GCTGATGCACTTCACTTCACTTAACAGTGTAACCAATCAATAGTTTACCCTATTCATGAT 593
consensus_10987#0      GCTGATGCACTTCACTTCACTTAACAGTGTAACCAATCAATAGTTTACCCTATTCATGAT 1309
consensus_10987#2      ATTATAGTACTACCGTATGAACCTTAAGATTACCAGAATAGGATTTCCCC---------- 852
                         *   * *** *  *         *   * ****    *   *** ***          

consensus_10987#1      GTAAATTATGATCTCATTTGATCATTTCATTATACGATGATAAAGAGTAACATTGTTCTG 954
consensus_10987#3      GTAAATTATGATCTCATTTGATCATTTCATTGTACGATGATAAAGAGTAACATTGTTCTG 653
consensus_10987#0      GTAAATTATGATCTCATTTGATCATTTCATTATACGATGATAAAGAGTAACATTGTTCTG 1369
consensus_10987#2      ------------------------------------------------------------
                                                                                   

consensus_10987#1      CTAA------------------------------------- 958
consensus_10987#3      CTATTACCATTCATGATTTCTGTTAAAAAAAAAAAAAAAAA 694
consensus_10987#0      CT--------------------------------------- 1371
consensus_10987#2      -----------------------------------------
                                                                




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)