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Oryza sativa
cluster # 10989 cluster # 10989       Sequences # 8       consensus # 5


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_10989#0 length = 1649 sequences # 3  
consensus_10989#1 length = 725 sequences # 1  
consensus_10989#2 length = 659 sequences # 1  
consensus_10989#3 length = 579 sequences # 1  
consensus_10989#4 length = 496 sequences # 2  

consensusID : consensus_10989#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1649
fasta sequence
                              [CGTCTTCTTCCCAAGCCCCATGTTCTTCTCCTTCCTCCTCATCGCCACTCCTCTCCCCCACCTGCAAAGATCTCCCACCCCTAAACAAATCCAAATAAAAGCCCCGAAAAAAAAGGCTTGCTCATTTATGTCTCCTCATTTCCGCGAGCTGATTCGCAATCAATCGCTCTCTCGCTGGTTCGGATGATGCCCGCGGTTTCCCTCTTCGCCACCGCCCCTTTAAAACCCTCCCCCTCGCCTCCGGGCTCCCACCACCGCCGCCACTGAGCCAGTCCGCAGCCTCACCGCAATGCCGTCACTCCCCTTCCCTTCTCCTTCGTTCTAGGAGGCAGTGGAAACAACAGAATTTCTATCCACGGTGCACGCCAAGAGGGCCAGCTCCTCAATCCCGTGATACTCCGCCGAAGAGAGACACTGGTATTGCTAGTGAGAAGGAATGGGGAATCAACCTTCTGGATGAAGCAGTCAAGGAGTCTGGGACAAATGAAGATGGAAGCACCTGGTACAGGGAGAGTGGAGACGATCGTGGTGATAATGGGTACAGGTGTCGCTGGGCTAGGATGGGAGGACAGAGTCATGATGGCACCACTGAATGGAAAGAGACGTGGTGGGAGAAAAGTGATTGGACCGGATATAAGGAGTTAGGTGCGGAGAAGTCTGGAAAGAATGGTGAAGGTGATTCTTGGTGGGAGAAATGGAAAGAAGTTCTTTACCAAGATGAATGGAGCAATCTTGCAAGAATAGAGAGGAGCGCTGAAAAGCAAGCGAAATCAGGAGCAGAAAATGCTGGGTGGTATGAAAAATGGTGGGAGAAATATGATGCCAAAGGCTGGACAGAAAAAGGTGCTCATAAGTACGGAAGATTAAATGAACAATCCTGGTGGGAGAGGTGGGGTGAACATTATGGTGGCCGGGGTTTTGTATTGAAATGGACAGATAAGTGGGCAGAGACAGACTTAGGCACCAAATGGGGGGACAAATGGGAAGAGAAATTCTTTGCTGGAATTGGTTCTCGACAAGGGGAGACATGGCATGTATCCCCTGGTGGAGATCGATGGTCAAGAACTTGGGGAGAAGAGCATTTTGGTAATGGAAAAGTTCATAAATACGGCAAGAGCACAACTGGCGAGAGCTGGGATTTGGTAGTTGATGAGGAGACGTACTACGAGGCGGAGCCTCATTACGGATGGGCTGATGTCGTTGGAGACTCAACACAACTTCTGTCGATACAACCTGTCGAAAGGCCACCAGGAGTGTACCCAACTATTGACTTCAGCGCTTCATCTCCAGCTCCACCTTCGGATGATCCACCAGGCATGCCTCCTTCGCCTCTGGAATGAGTCATACCTGTGCCAGTACAAAAGAGAAGCTTTTCTGCATAGGTTTCCAATTTTGCCTGTAAGGGGAACATTCTTTGTAGAAAGGGGATCAA-CCGCAGTATTGCGTTCATTGGTTCATTCATTCTTTCGTAGCATGTTTTCCTTCCGCGGCTTAGCGTTTTATCGTTCCGGACTGCTGTTTGATCAATTAGGCGAAATAATCAGTGGCTCGCGATCATATTGTCTCTATGCTTATCCATGTGCATTTTTGCATAAAAGCTCCGTATAAATAACGGAGGAGAAAGCTCTCAATGATATCCACGCGNTTTT]

[+] EMBL AK064510             [CGTCTTCTTCCCAAGCCCCATGTTCTTCTCCTTCCTCCTCATCGCCACTCCTCTCCCCCACCTGCAAAGATCTCCCACCCCTAAACAAATCCAAATAAAAGCCCCGAAAAAAAAGGCTTGCTCATTTATGTCTCCTCATTTCCGCGAGCTGATTCGCAATCAATCGCTCTCTCGCTGGTTCGGATGATGCCCGCGGTTTCCCTCTTCGCCACCGCCCCTTTAAAACCCTCCCCCTCGCCTCCGGGCTCCCACCACCGCCGCCACTGAGCCAGTCCGCAGCCTCACCGCAATGCCGTCACTCCCCTTCCCTTCTCCTTCGTTCTAGGAGGCAGTGGAAACAACAGAATTTCTATCCACGGTGCACGCCAAGAGGGCCAGCTCCTCAATCCCGTGATACTCCGCCGAAGAGAGACACTGGTATTGCTAGTGAGAAGGAATGGGGAATCAACCTTCTGGATGAAGCAGTCAAGGAGTCTGGGACAAATGAAGATGGAAGCACCTGGTACAGGGAGAGTGGAGACGATCGTGGTGATAATGGGTACAGGTGTCGCTGGGCTAGGATGGGAGGACAGAGTCATGATGGCACCACTGAATGGAAAGAGACGTGGTGGGAGAAAAGTGATTGGACCGGATATAAGGAGTTAGGTGCGGAGAAGTCTGGAAAGAATGGTGAAGGTGATTCTTGGTGGGAGAAATGGAAAGAAGTTCTTTACCAAGATGAATGGAGCAATCTTGCAAGAATAGAGAGGAGCGCTGAAAAGCAAGCGAAATCAGGAGCAGAAAATGCTGGGTGGTATGAAAAATGGTGGGAGAAATATGATGCCAAAGGCTGGACAGAAAAAGGTGCTCATAAGTACGGAAGATTAAATGAACAATCCTGGTGGGAGAGGTGGGGTGAACATTATGGTGGCCGGGGTTTTGTATTGAAATGGACAGATAAGTGGGCAGAGACAGACTTAGGCACCAAATGGGGGGACAAATGGGAAGAGAAATTCTTTGCTGGAATTGGTTCTCGACAAGGGGAGACATGGCATGTATCCCCTGGTGGAGATCGATGGTCAAGAACTTGGGGAGAAGAGCATTTTGGTAATGGAAAAGTTCATAAATACGGCAAGAGCACAACTGGCGAGAGCTGGGATTTGGTAGTTGATGAGGAGACGTACTACGAGGCGGAGCCTCATTACGGATGGGCTGATGTCGTTGGAGACTCAACACAACTTCTGTCGATACAACCTGTCGAAAGGCCACCAGGAGTGTACCCAACTATTGACTTCAGCGCTTCATCTCCAGCTCCACCTTCGGATGATCCACCAGGCATGCCTCCTTCGCCTCTGGAATGAGTCATACCTGTGCCAGTACAAAAGAGAAGCTTTTCTGCATAGGTTTCCAATTTTGCCTGTAAGGGGAACATTCTTTGTAGGAAGGGGATCAA CCGCAGTATTGCGTTCATTGGTTCATTCATTCTTTCGTAGCATGTTTTCCTTCCGCGGCTTAGCGTTTTATCGTTCCGGACTGCTGTTTGATCAATTAGGCGAAATAATCAGTGGCTCGCGATC                                                                                             ]
[+] EMBL CA765759             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       CATGTATCCCCTGGTGGAGATCGATGGTCAAGAACTTGGGGAGAAGAGCATTTTGGTAATGGAAAAGTTCATAAATACGGCAAGAGCACAACTGGCGAGAGCTGGGATTTGGTAGTTGGTGAGGAGACGTACTACGAGGCGGAGCCTCATTACGGATGGGCTGATGTCGTTGGAGACTCAACACAACTTCTGTCGATACAACCTGTCGAAAGGCCACCAGGAGTGTACCCAACTATTGACTTCAGCGCTTCATCTCCAGCTCCACCTTCGGATGATCCACCAGGCATGCCTCCTTCGCCTCTGGAATGAGTCATACCTGTGCCAGTACAAAAGAGAAGCTTTTCTGCATAGGTTTCCAATTTTGCCTGTAAGGGGAACATTCTTTGTAGAAAGGGGATCAACCCGCAGTATTGCGTTCATTGGTTCATTCATTCTTTCGTAGCATGTTTTCCTTCCGCGGCTTAGCGTTTTATCGTTCCGGACTGCTGTTTGATCAATTAGGCGAAATAATCAGTGGCTCGCGATCATATTGTCTCTATGCTTATCCATGTGCATTTTTGCATAAAAGCTCCGTATAAATAACGGAGGAGAAAGCTCTCAATGATATCCACGCGNTTTT]
[+] EMBL CB096686             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       CATGTATCCCCTGGTGGAGATCGATGGTCAAGAACTTGGGGAGAAGAGCATTTTGGTAATGGAAAAGTTCATAAATACGGCAAGAGCACAACTGGCGAGAGCTGGGATTTGGTAGTTGATGAGGAGACGTACTACGAGGCGGAGCCTCATTACGGATGGGCTGATGTCGTTGGAGACTCAACACAACTTCTGTCGATACAACCTGTCGAAAGGCCACCAGGAGTGTACCCAACTATTGACTTCAGCGCTTCATCTCCAGCTCCACCTTCGGATGATCCACCAGGCATGCCTCCTTCGCCTCTGGAATGAGTCATACCTGTGCCAGTACAAAAGAGAAGCTTTTCTGCATAGGTTTCCAATTTTGCCTGTAAGGGGAACATTCTTTGTAGAAAGGGGATCAA CCGCAGTATTGCGTTCATT                                                                                                                                                                                                      ]


>consensus_10989#0 CGTCTTCTTCCCAAGCCCCATGTTCTTCTCCTTCCTCCTCATCGCCACTCCTCTCCCCCA CCTGCAAAGATCTCCCACCCCTAAACAAATCCAAATAAAAGCCCCGAAAAAAAAGGCTTG CTCATTTATGTCTCCTCATTTCCGCGAGCTGATTCGCAATCAATCGCTCTCTCGCTGGTT CGGATGATGCCCGCGGTTTCCCTCTTCGCCACCGCCCCTTTAAAACCCTCCCCCTCGCCT CCGGGCTCCCACCACCGCCGCCACTGAGCCAGTCCGCAGCCTCACCGCAATGCCGTCACT CCCCTTCCCTTCTCCTTCGTTCTAGGAGGCAGTGGAAACAACAGAATTTCTATCCACGGT GCACGCCAAGAGGGCCAGCTCCTCAATCCCGTGATACTCCGCCGAAGAGAGACACTGGTA TTGCTAGTGAGAAGGAATGGGGAATCAACCTTCTGGATGAAGCAGTCAAGGAGTCTGGGA CAAATGAAGATGGAAGCACCTGGTACAGGGAGAGTGGAGACGATCGTGGTGATAATGGGT ACAGGTGTCGCTGGGCTAGGATGGGAGGACAGAGTCATGATGGCACCACTGAATGGAAAG AGACGTGGTGGGAGAAAAGTGATTGGACCGGATATAAGGAGTTAGGTGCGGAGAAGTCTG GAAAGAATGGTGAAGGTGATTCTTGGTGGGAGAAATGGAAAGAAGTTCTTTACCAAGATG AATGGAGCAATCTTGCAAGAATAGAGAGGAGCGCTGAAAAGCAAGCGAAATCAGGAGCAG AAAATGCTGGGTGGTATGAAAAATGGTGGGAGAAATATGATGCCAAAGGCTGGACAGAAA AAGGTGCTCATAAGTACGGAAGATTAAATGAACAATCCTGGTGGGAGAGGTGGGGTGAAC ATTATGGTGGCCGGGGTTTTGTATTGAAATGGACAGATAAGTGGGCAGAGACAGACTTAG GCACCAAATGGGGGGACAAATGGGAAGAGAAATTCTTTGCTGGAATTGGTTCTCGACAAG GGGAGACATGGCATGTATCCCCTGGTGGAGATCGATGGTCAAGAACTTGGGGAGAAGAGC ATTTTGGTAATGGAAAAGTTCATAAATACGGCAAGAGCACAACTGGCGAGAGCTGGGATT TGGTAGTTGATGAGGAGACGTACTACGAGGCGGAGCCTCATTACGGATGGGCTGATGTCG TTGGAGACTCAACACAACTTCTGTCGATACAACCTGTCGAAAGGCCACCAGGAGTGTACC CAACTATTGACTTCAGCGCTTCATCTCCAGCTCCACCTTCGGATGATCCACCAGGCATGC CTCCTTCGCCTCTGGAATGAGTCATACCTGTGCCAGTACAAAAGAGAAGCTTTTCTGCAT AGGTTTCCAATTTTGCCTGTAAGGGGAACATTCTTTGTAGAAAGGGGATCAACCGCAGTA TTGCGTTCATTGGTTCATTCATTCTTTCGTAGCATGTTTTCCTTCCGCGGCTTAGCGTTT TATCGTTCCGGACTGCTGTTTGATCAATTAGGCGAAATAATCAGTGGCTCGCGATCATAT TGTCTCTATGCTTATCCATGTGCATTTTTGCATAAAAGCTCCGTATAAATAACGGAGGAG AAAGCTCTCAATGATATCCACGCGNTTTT



consensusID : consensus_10989#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 725
fasta sequence
                              [AAGTTTGCCTGCTGCATTGGCCGAAATTCACACTGGTGCAATCTATTGGAAGCTATGCTGGATATTTTAACATGTTGCTTTTATATATGAGCTGTATCTACTGTCTGCATACTCAGGTTTAGAAGTTAGATCCTGTTTATTGCATTGTTAAATGTGTGCACCGCTCGTAGTGTGACTTATGACTTATCTGATTTCCAATTGCCATCCACTTATCTGATTTGATACTTTCAGGATGGTCAAGAACTTGGGGAGAAGAGCATTTTGGTAATGGAAAAGTTCATAAATACGGCAAGAGCACAACTGGCGAGAGCTGGGATTTGGTAGTTGATGAGGAGACGTACTACGAGGCGGAGCCTCATTACGGATGGGCTGATGTCGTTGGAGACTCAACACAACTTCTGTCGATACAACCTGTCGAAAGGCCACCAGGAGTGTACCCAACTATTGACTTCAGCGCTTCATCTCCAGCTCCCCCTTCGGATGATCCACCAGGCATGCCTCCTTCGCCTCTGGAATGAGTCATACCTGTGCCAGTACAAAAGAGAAGCTTTTCTGCATAGGTTTCCAATTTTGCCTGTAAGGGGAACATTCTTTGTAGAAAGGGGATCAACCGCAGTATTGCGTTCATTGGTTCATTCATTCTTTCGTAGCATGTTTTCCTTCCGCGGCTTAGCGTTTTATCGTTCCGGACTGCTGTTTGATCAATTAGGCGAAATAATCAGTGG]

[-] EMBL CB670053             [AAGTTTGCCTGCTGCATTGGCCGAAATTCACACTGGTGCAATCTATTGGAAGCTATGCTGGATATTTTAACATGTTGCTTTTATATATGAGCTGTATCTACTGTCTGCATACTCAGGTTTAGAAGTTAGATCCTGTTTATTGCATTGTTAAATGTGTGCACCGCTCGTAGTGTGACTTATGACTTATCTGATTTCCAATTGCCATCCACTTATCTGATTTGATACTTTCAGGATGGTCAAGAACTTGGGGAGAAGAGCATTTTGGTAATGGAAAAGTTCATAAATACGGCAAGAGCACAACTGGCGAGAGCTGGGATTTGGTAGTTGATGAGGAGACGTACTACGAGGCGGAGCCTCATTACGGATGGGCTGATGTCGTTGGAGACTCAACACAACTTCTGTCGATACAACCTGTCGAAAGGCCACCAGGAGTGTACCCAACTATTGACTTCAGCGCTTCATCTCCAGCTCCCCCTTCGGATGATCCACCAGGCATGCCTCCTTCGCCTCTGGAATGAGTCATACCTGTGCCAGTACAAAAGAGAAGCTTTTCTGCATAGGTTTCCAATTTTGCCTGTAAGGGGAACATTCTTTGTAGAAAGGGGATCAACCGCAGTATTGCGTTCATTGGTTCATTCATTCTTTCGTAGCATGTTTTCCTTCCGCGGCTTAGCGTTTTATCGTTCCGGACTGCTGTTTGATCAATTAGGCGAAATAATCAGTGG]


>consensus_10989#1 AAGTTTGCCTGCTGCATTGGCCGAAATTCACACTGGTGCAATCTATTGGAAGCTATGCTG GATATTTTAACATGTTGCTTTTATATATGAGCTGTATCTACTGTCTGCATACTCAGGTTT AGAAGTTAGATCCTGTTTATTGCATTGTTAAATGTGTGCACCGCTCGTAGTGTGACTTAT GACTTATCTGATTTCCAATTGCCATCCACTTATCTGATTTGATACTTTCAGGATGGTCAA GAACTTGGGGAGAAGAGCATTTTGGTAATGGAAAAGTTCATAAATACGGCAAGAGCACAA CTGGCGAGAGCTGGGATTTGGTAGTTGATGAGGAGACGTACTACGAGGCGGAGCCTCATT ACGGATGGGCTGATGTCGTTGGAGACTCAACACAACTTCTGTCGATACAACCTGTCGAAA GGCCACCAGGAGTGTACCCAACTATTGACTTCAGCGCTTCATCTCCAGCTCCCCCTTCGG ATGATCCACCAGGCATGCCTCCTTCGCCTCTGGAATGAGTCATACCTGTGCCAGTACAAA AGAGAAGCTTTTCTGCATAGGTTTCCAATTTTGCCTGTAAGGGGAACATTCTTTGTAGAA AGGGGATCAACCGCAGTATTGCGTTCATTGGTTCATTCATTCTTTCGTAGCATGTTTTCC TTCCGCGGCTTAGCGTTTTATCGTTCCGGACTGCTGTTTGATCAATTAGGCGAAATAATC AGTGG



consensusID : consensus_10989#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 659
fasta sequence
                              [TTTTAACATGTTGCTTTTATATATGAGCTGTATTTACTGTCTGCATACTCAGGTTTAGAAGTTAGATCCTGTTTATTGCATTGTTAAATGTGTGCCCCGCTGGTAGTGTGACTTATGACTTATTTGATTTCCAATTGCCATCCACTTATTTGATTTGATACTTTCAGGATGGTCAAGAACTTGGGGAGAAGAGCATTTTGGTAATGGAAAAGTTCATAAATACGGCAAGAGCACAACTGGCGAGAGCTGGGATTTGGTAGTTGATGAGGAGACGTACTACGAGGCGGACCCTCATTACGGATGGGCTGATGTCGTTGGAGACTCAACACAACTTCTGTCGATACACCCTGTCGAAAGGCCCCCAGGAGGGTACCCAATTATTGACCGCCCCCCTCGCGGTCAGATCGAACGGCCGCGCCACGAGCCCCCTGGAGCACGCGGCCATCTTCTCATGCCACGGCGAGGGCTTCAGGAGCGGCGGCGGCGGCGGCGGACTGGCTCAGTGGCGGCGGTGGTGGGAGCCCGGAGGCGAGGGGGAGGGTTTTAAAGGGGCGGTGGCGAAGAGGGAAACCGCGGGCATCATCCGAACCAGCGAGAGAGCGATTGATTGCGAATCAGCTCGCGGAAATGAGGAGACATAAATGAGCAAGCGTTTTTTT]

[-] EMBL CB670052             [TTTTAACATGTTGCTTTTATATATGAGCTGTATTTACTGTCTGCATACTCAGGTTTAGAAGTTAGATCCTGTTTATTGCATTGTTAAATGTGTGCCCCGCTGGTAGTGTGACTTATGACTTATTTGATTTCCAATTGCCATCCACTTATTTGATTTGATACTTTCAGGATGGTCAAGAACTTGGGGAGAAGAGCATTTTGGTAATGGAAAAGTTCATAAATACGGCAAGAGCACAACTGGCGAGAGCTGGGATTTGGTAGTTGATGAGGAGACGTACTACGAGGCGGACCCTCATTACGGATGGGCTGATGTCGTTGGAGACTCAACACAACTTCTGTCGATACACCCTGTCGAAAGGCCCCCAGGAGGGTACCCAATTATTGACCGCCCCCCTCGCGGTCAGATCGAACGGCCGCGCCACGAGCCCCCTGGAGCACGCGGCCATCTTCTCATGCCACGGCGAGGGCTTCAGGAGCGGCGGCGGCGGCGGCGGACTGGCTCAGTGGCGGCGGTGGTGGGAGCCCGGAGGCGAGGGGGAGGGTTTTAAAGGGGCGGTGGCGAAGAGGGAAACCGCGGGCATCATCCGAACCAGCGAGAGAGCGATTGATTGCGAATCAGCTCGCGGAAATGAGGAGACATAAATGAGCAAGCGTTTTTTT]


>consensus_10989#2 TTTTAACATGTTGCTTTTATATATGAGCTGTATTTACTGTCTGCATACTCAGGTTTAGAA GTTAGATCCTGTTTATTGCATTGTTAAATGTGTGCCCCGCTGGTAGTGTGACTTATGACT TATTTGATTTCCAATTGCCATCCACTTATTTGATTTGATACTTTCAGGATGGTCAAGAAC TTGGGGAGAAGAGCATTTTGGTAATGGAAAAGTTCATAAATACGGCAAGAGCACAACTGG CGAGAGCTGGGATTTGGTAGTTGATGAGGAGACGTACTACGAGGCGGACCCTCATTACGG ATGGGCTGATGTCGTTGGAGACTCAACACAACTTCTGTCGATACACCCTGTCGAAAGGCC CCCAGGAGGGTACCCAATTATTGACCGCCCCCCTCGCGGTCAGATCGAACGGCCGCGCCA CGAGCCCCCTGGAGCACGCGGCCATCTTCTCATGCCACGGCGAGGGCTTCAGGAGCGGCG GCGGCGGCGGCGGACTGGCTCAGTGGCGGCGGTGGTGGGAGCCCGGAGGCGAGGGGGAGG GTTTTAAAGGGGCGGTGGCGAAGAGGGAAACCGCGGGCATCATCCGAACCAGCGAGAGAG CGATTGATTGCGAATCAGCTCGCGGAAATGAGGAGACATAAATGAGCAAGCGTTTTTTT



consensusID : consensus_10989#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 579
fasta sequence
                              [AGAGGCCGAGACAAGGGGAGACATGGCATGTATCCCCTGGTGGAGATCGATGGTCAAGAACTTGGGGAGAAGAGCATTTTGGTAATGGAAAAGTTCATAAATACGGCAAGAGCACAACTGGCGAGAGCTGGGATTTGGTAGTTGATGAGGAGACGTACTACGAGGCGGAGCCTCATTACGGATGGGCTGATGTCGTTGGAGACTCAACACAACTTCTGTCGATACAACCTGTCGAAAGGCCACCAGGAGTGTACCCAACTATTGACTTTAGCGCTTCATCTCCAGCTCCACCTTGGGATGATCCACCAGGCATGCCTCCTTCGCCTCTGGAATGAGTCACACCTGTGCCAGTACAAAAGAGAAGCTTTTCTGCATAGGTTTCCAATTTTGCCTGTAAGGGGAACATTCTTTGTAGAAAGGGGATCAACCGCAGTATTGCGTTCATTGGTTCATTCATCCTTTCGTAGCATGTTTTCCTTCCGCGGCTTAGCGTTTTATCGTTCCGGACTGCTGTTTGATCAATTAGGCGAAATAATCAGTGGCTCGCGATCATATTGTCTCTAAAAAAAAAAAAAAAAA]

[-] EMBL CA762068             [AGAGGCCGAGACAAGGGGAGACATGGCATGTATCCCCTGGTGGAGATCGATGGTCAAGAACTTGGGGAGAAGAGCATTTTGGTAATGGAAAAGTTCATAAATACGGCAAGAGCACAACTGGCGAGAGCTGGGATTTGGTAGTTGATGAGGAGACGTACTACGAGGCGGAGCCTCATTACGGATGGGCTGATGTCGTTGGAGACTCAACACAACTTCTGTCGATACAACCTGTCGAAAGGCCACCAGGAGTGTACCCAACTATTGACTTTAGCGCTTCATCTCCAGCTCCACCTTGGGATGATCCACCAGGCATGCCTCCTTCGCCTCTGGAATGAGTCACACCTGTGCCAGTACAAAAGAGAAGCTTTTCTGCATAGGTTTCCAATTTTGCCTGTAAGGGGAACATTCTTTGTAGAAAGGGGATCAACCGCAGTATTGCGTTCATTGGTTCATTCATCCTTTCGTAGCATGTTTTCCTTCCGCGGCTTAGCGTTTTATCGTTCCGGACTGCTGTTTGATCAATTAGGCGAAATAATCAGTGGCTCGCGATCATATTGTCTCTAAAAAAAAAAAAAAAAA]


>consensus_10989#3 AGAGGCCGAGACAAGGGGAGACATGGCATGTATCCCCTGGTGGAGATCGATGGTCAAGAA CTTGGGGAGAAGAGCATTTTGGTAATGGAAAAGTTCATAAATACGGCAAGAGCACAACTG GCGAGAGCTGGGATTTGGTAGTTGATGAGGAGACGTACTACGAGGCGGAGCCTCATTACG GATGGGCTGATGTCGTTGGAGACTCAACACAACTTCTGTCGATACAACCTGTCGAAAGGC CACCAGGAGTGTACCCAACTATTGACTTTAGCGCTTCATCTCCAGCTCCACCTTGGGATG ATCCACCAGGCATGCCTCCTTCGCCTCTGGAATGAGTCACACCTGTGCCAGTACAAAAGA GAAGCTTTTCTGCATAGGTTTCCAATTTTGCCTGTAAGGGGAACATTCTTTGTAGAAAGG GGATCAACCGCAGTATTGCGTTCATTGGTTCATTCATCCTTTCGTAGCATGTTTTCCTTC CGCGGCTTAGCGTTTTATCGTTCCGGACTGCTGTTTGATCAATTAGGCGAAATAATCAGT GGCTCGCGATCATATTGTCTCTAAAAAAAAAAAAAAAAA



consensusID : consensus_10989#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 496
fasta sequence
                              [CCGGCCAAGAGCACAACTGGCGAGAGCTGGGATTTGGTAGTTGATGAGGAGACGTACTACGAGTAAGATTATGTCTTGTTTGGTTCTTCCAGACATCTTCGGAGTATTTTCAGATTTACAATTTGGCGTTGATCTGTGCATTGTCAATTAGGGCGGAGCCTCATTACGGATGGGCTGATGTCGTTGGAGACTCAACACAACTTCTGTCGATACAACCTGTCGAAAGGCCACCAGGAGTGTACCCAACTATTGACTTCAGCGCTTCATCTCCAGCTCCACCTTCGGATGATCCACCAGGCATGCCTCCTTCGCCTCTGGAATGAGTCATACCTGTGCCAGTACAAAGAGAAGCTTTTCTGCATAGGTTTCCAATTTTGCCTGTAAGGGGAACATTCTTTGTAGAAAGGGGATCAACCGCAGTATTGCGTTCATTGGTTCATTCATTCTTTCGTAGCATGTTTTCCTTCCCGCGGCTTAGCGTTTTATCGTTCAAAAA]

[+] EMBL BM421161             [CCGGCCAAGAGCACAACTGGCGAGAGCTGGGATTTGGTAGTTGATGAGGAGACGTACTACGAGTAAGATTATGTCTTGTTTGGTTCTTCCAGACATCTTCGGAGTATTTTCAGATTTACAATTTGGCGTTGATCTGTGCATTGTCAATTAGGGCGGAGCCTCATTACGGATGGGCTGATGTCGTTGGAGACTCAACACAACTTCTGTCGATACAACCTGTCGAAAGGCCACCAGGAGTGTACCCAACTATTGACTTCAGCGCTTCATCTCCAGCTCCACCTTCGGATGATCCACCAGGCATGCCTCCTTCGCCTCTGGAATGAGTCATACCTGTGCCAGTACAAAGAGAAGCTTTTCTGCATAGGTTTCCAATTTTGCCTGTAAGGGGAACATTCTTTGTAGAAAGGGGATCAACCGCAGTATTGCGTTCATTGGTTCATTCATTCTTTCGTAGCATGTTTTCCTTCCCGCGGCTTAGCGTTTTATCGTTCAAAAA]
[+] EMBL AA749641             [                                                                                                                                                                                                                                                                                                                                                      AAAGAGAAGCTTTTCTGCATAGGTTTCCAATTTTGCCTGTAAGGGGAACATTCTTTGTAGAAAGGGGACTAACCGCAGTATTGCGTTCATTGGTTCATTCATTC                                                  ]


>consensus_10989#4 CCGGCCAAGAGCACAACTGGCGAGAGCTGGGATTTGGTAGTTGATGAGGAGACGTACTAC GAGTAAGATTATGTCTTGTTTGGTTCTTCCAGACATCTTCGGAGTATTTTCAGATTTACA ATTTGGCGTTGATCTGTGCATTGTCAATTAGGGCGGAGCCTCATTACGGATGGGCTGATG TCGTTGGAGACTCAACACAACTTCTGTCGATACAACCTGTCGAAAGGCCACCAGGAGTGT ACCCAACTATTGACTTCAGCGCTTCATCTCCAGCTCCACCTTCGGATGATCCACCAGGCA TGCCTCCTTCGCCTCTGGAATGAGTCATACCTGTGCCAGTACAAAGAGAAGCTTTTCTGC ATAGGTTTCCAATTTTGCCTGTAAGGGGAACATTCTTTGTAGAAAGGGGATCAACCGCAG TATTGCGTTCATTGGTTCATTCATTCTTTCGTAGCATGTTTTCCTTCCCGCGGCTTAGCG TTTTATCGTTCAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10989#0      CGTCTTCTTCCCAAGCCCCATGTTCTTCTCCTTCCTCCTCATCGCCACTCCTCTCCCCCA 60
consensus_10989#3      ------------------------------------------------------------
consensus_10989#4      ------------------------------------------------------------
consensus_10989#1      ------------------------------------------------------------
consensus_10989#2      ------------------------------------------------------------
                                                                                   

consensus_10989#0      CCTGCAAAGATCTCCCACCCCTAAACAAATCCAAATAAAAGCCCCGAAAAAAAAGGCTTG 120
consensus_10989#3      ------------------------------------------------------------
consensus_10989#4      ------------------------------------------------------------
consensus_10989#1      ------------------------------------------------------------
consensus_10989#2      ------------------------------------------------------------
                                                                                   

consensus_10989#0      CTCATTTATGTCTCCTCATTTCCGCGAGCTGATTCGCAATCAATCGCTCTCTCGCTGGTT 180
consensus_10989#3      ------------------------------------------------------------
consensus_10989#4      ------------------------------------------------------------
consensus_10989#1      ------------------------------------------------------------
consensus_10989#2      ------------------------------------------------------------
                                                                                   

consensus_10989#0      CGGATGATGCCCGCGGTTTCCCTCTTCGCCACCGCCCCTTTAAAACCCTCCCCCTCGCCT 240
consensus_10989#3      ------------------------------------------------------------
consensus_10989#4      ------------------------------------------------------------
consensus_10989#1      ------------------------------------------------------------
consensus_10989#2      ------------------------------------------------------------
                                                                                   

consensus_10989#0      CCGGGCTCCCACCACCGCCGCCACTGAGCCAGTCCGCAGCCTCACCGCAATGCCGTCACT 300
consensus_10989#3      ------------------------------------------------------------
consensus_10989#4      ------------------------------------------------------------
consensus_10989#1      ------------------------------------------------------------
consensus_10989#2      ------------------------------------------------------------
                                                                                   

consensus_10989#0      CCCCTTCCCTTCTCCTTCGTTCTAGGAGGCAGTGGAAACAACAGAATTTCTATCCACGGT 360
consensus_10989#3      ------------------------------------------------------------
consensus_10989#4      ------------------------------------------------------------
consensus_10989#1      ------------------------------------------------------------
consensus_10989#2      ------------------------------------------------------------
                                                                                   

consensus_10989#0      GCACGCCAAGAGGGCCAGCTCCTCAATCCCGTGATACTCCGCCGAAGAGAGACACTGGTA 420
consensus_10989#3      ------------------------------------------------------------
consensus_10989#4      ------------------------------------------------------------
consensus_10989#1      ------------------------------------------------------------
consensus_10989#2      ------------------------------------------------------------
                                                                                   

consensus_10989#0      TTGCTAGTGAGAAGGAATGGGGAATCAACCTTCTGGATGAAGCAGTCAAGGAGTCTGGGA 480
consensus_10989#3      ------------------------------------------------------------
consensus_10989#4      ------------------------------------------------------------
consensus_10989#1      ------------------------------------------------------------
consensus_10989#2      ------------------------------------------------------------
                                                                                   

consensus_10989#0      CAAATGAAGATGGAAGCACCTGGTACAGGGAGAGTGGAGACGATCGTGGTGATAATGGGT 540
consensus_10989#3      ------------------------------------------------------------
consensus_10989#4      ------------------------------------------------------------
consensus_10989#1      ------------------------------------------------------------
consensus_10989#2      ------------------------------------------------------------
                                                                                   

consensus_10989#0      ACAGGTGTCGCTGGGCTAGGATGGGAGGACAGAGTCATGATGGCACCACTGAATGGAAAG 600
consensus_10989#3      ------------------------------------------------------------
consensus_10989#4      ------------------------------------------------------------
consensus_10989#1      ------------------------------------------------------------
consensus_10989#2      ------------------------------------------------------------
                                                                                   

consensus_10989#0      AGACGTGGTGGGAGAAAAGTGATTGGACCGGATATAAGGAGTTAGGTGCGGAGAAGTCTG 660
consensus_10989#3      ------------------------------------------------------------
consensus_10989#4      ------------------------------------------------------------
consensus_10989#1      ------------------------------------------------------------
consensus_10989#2      ------------------------------------------------------------
                                                                                   

consensus_10989#0      GAAAGAATGGTGAAGGTGATTCTTGGTGGGAGAAATGGAAAGAAGTTCTTTACCAAGATG 720
consensus_10989#3      ------------------------------------------------------------
consensus_10989#4      ------------------------------------------------------------
consensus_10989#1      ------------------------------------------------------------
consensus_10989#2      ------------------------------------------------------------
                                                                                   

consensus_10989#0      AATGGAGCAATCTTGCAAGAATAGAGAGGAGCGCTGAAAAGCAAGCGAAATCAGGAGCAG 780
consensus_10989#3      ------------------------------------------------------------
consensus_10989#4      ------------------------------------------------------------
consensus_10989#1      ------------------------------------------------------------
consensus_10989#2      ------------------------------------------------------------
                                                                                   

consensus_10989#0      AAAATGCTGGGTGGTATGAAAAATGGTGGGAGAAATATGATGCCAAAGGCTGGACAGAAA 840
consensus_10989#3      ------------------------------------------------------------
consensus_10989#4      ------------------------------------------------------------
consensus_10989#1      ----------------------------------------------AAGTTTGCCTGCTG 14
consensus_10989#2      ------------------------------------------------------------
                                                                                   

consensus_10989#0      AAGGTGCTCATAAGTACGGAAGATTAAATGAACAATCCTGGTGGGAGAGGTGGGGTGAAC 900
consensus_10989#3      ------------------------------------------------------------
consensus_10989#4      ------------------------------------------------------------
consensus_10989#1      CATTGGCCGAAATTCACACTGGTGCAATCTATTGGAAGCTATGCTGGATATT---TTAAC 71
consensus_10989#2      -----------------------------------------------------TTTTAAC 7
                                                                                   

consensus_10989#0      ATTATGGTGGCCGGGGTTTTGTATTGAAATGGACAGATAAGTGGGCAGAGACAGACTTAG 960
consensus_10989#3      ------------------------------------------------------------
consensus_10989#4      ------------------------------------------------------------
consensus_10989#1      ATGTTGCTTTTATATATGAGCTGTATCTACTGTCTGCATACTCAGGTTTAGAAGTTAGAT 131
consensus_10989#2      ATGTTGCTTTTATATATGAGCTGTATTTACTGTCTGCATACTCAGGTTTAGAAGTTAGAT 67
                                                                                   

consensus_10989#0      GCACCAAATGGGGGGACAAATGGGAAGAGAAATTCTTTGCTGGAATTGGTTCTCGACAAG 1020
consensus_10989#3      ---------------------------------------------AGAGGCCGAGACAAG 15
consensus_10989#4      ---------------------------------------------------CCGGCCAAG 9
consensus_10989#1      CCTGTTTATTGCATTGTTAAATGTGTGCACCGCTCGTAGTGTGACTTATGACTTATCTGA 191
consensus_10989#2      CCTGTTTATTGCATTGTTAAATGTGTGCCCCGCTGGTAGTGTGACTTATGACTTATTTGA 127
                                                                          *        

consensus_10989#0      GGGAGACATGGCATGTATC---CCCTGGTGGAGATC----GATGGTCAAGAACTTGGGGA 1073
consensus_10989#3      GGGAGACATGGCATGTATC---CCCTGGTGGAGATC----GATGGTCAAGAACTTGGGGA 68
consensus_10989#4      AGCACAACTGGCGAGAGCT---GGGATTTGGTAGTT----GATGA--GGAGACGTACTAC 60
consensus_10989#1      TTTCCAATTGCCATCCACTTATCTGATTTGATACTTTCAGGATGGTCAAGAACTTGGGGA 251
consensus_10989#2      TTTCCAATTGCCATCCACTTATTTGATTTGATACTTTCAGGATGGTCAAGAACTTGGGGA 187
                            *  ** *                **    *     ****       ** *     

consensus_10989#0      GAAGAGCATTTTGGTAATGGAAAAGTTCATAAATACGGCAAGAGCACAACTGGCGAGAGC 1133
consensus_10989#3      GAAGAGCATTTTGGTAATGGAAAAGTTCATAAATACGGCAAGAGCACAACTGGCGAGAGC 128
consensus_10989#4      GAGTAAGATTATGTC--TTGTTTGGTTCTTCCAGACATCTTCGGAGTATTT--TCAGATT 116
consensus_10989#1      GAAGAGCATTTTGGTAATGGAAAAGTTCATAAATACGGCAAGAGCACAACTGGCGAGAGC 311
consensus_10989#2      GAAGAGCATTTTGGTAATGGAAAAGTTCATAAATACGGCAAGAGCACAACTGGCGAGAGC 247
                       **  *  *** **    * *    **** *  * **  *    *   *  *    ***  

consensus_10989#0      TGGGATTTGGTAGTTGATGAGGAGACGTACTACGAGG-CGGAGCCTCATTACGGATGGGC 1192
consensus_10989#3      TGGGATTTGGTAGTTGATGAGGAGACGTACTACGAGG-CGGAGCCTCATTACGGATGGGC 187
consensus_10989#4      TACAATTTGGC-GTTGATCTGTGCATTGTCAATTAGGGCGGAGCCTCATTACGGATGGGC 175
consensus_10989#1      TGGGATTTGGTAGTTGATGAGGAGACGTACTACGAGG-CGGAGCCTCATTACGGATGGGC 370
consensus_10989#2      TGGGATTTGGTAGTTGATGAGGAGACGTACTACGAGG-CGGACCCTCATTACGGATGGGC 306
                       *   ******  ******  *   *    * *  *** **** *****************

consensus_10989#0      TGATGTCGTTGGAGACTCAACACAACTTCTGTCGATACAACCTGTCGAAAGGCCACCAGG 1252
consensus_10989#3      TGATGTCGTTGGAGACTCAACACAACTTCTGTCGATACAACCTGTCGAAAGGCCACCAGG 247
consensus_10989#4      TGATGTCGTTGGAGACTCAACACAACTTCTGTCGATACAACCTGTCGAAAGGCCACCAGG 235
consensus_10989#1      TGATGTCGTTGGAGACTCAACACAACTTCTGTCGATACAACCTGTCGAAAGGCCACCAGG 430
consensus_10989#2      TGATGTCGTTGGAGACTCAACACAACTTCTGTCGATACACCCTGTCGAAAGGCCCCCAGG 366
                       *************************************** ************** *****

consensus_10989#0      AGTGTACCCAACTATTGACTTCAGCGCT-----TCATCTCCAGCTCCACCTTCGGATGAT 1307
consensus_10989#3      AGTGTACCCAACTATTGACTTTAGCGCT-----TCATCTCCAGCTCCACCTTGGGATGAT 302
consensus_10989#4      AGTGTACCCAACTATTGACTTCAGCGCT-----TCATCTCCAGCTCCACCTTCGGATGAT 290
consensus_10989#1      AGTGTACCCAACTATTGACTTCAGCGCT-----TCATCTCCAGCTCCCCCTTCGGATGAT 485
consensus_10989#2      AGGGTACCCAATTATTGACCGCCCCCCTCGCGGTCAGATCGAACGGCCGCGCCACGAGCC 426
                       ** ******** *******     * **     ***  ** * *  *  *       *  

consensus_10989#0      CCACCAGGCATGCCTCCTTCGCCTC------TGGAATGAGTCATACCTGTGCCAGTA--- 1358
consensus_10989#3      CCACCAGGCATGCCTCCTTCGCCTC------TGGAATGAGTCACACCTGTGCCAGTA--- 353
consensus_10989#4      CCACCAGGCATGCCTCCTTCGCCTC------TGGAATGAGTCATACCTGTGCCAGTA--- 341
consensus_10989#1      CCACCAGGCATGCCTCCTTCGCCTC------TGGAATGAGTCATACCTGTGCCAGTA--- 536
consensus_10989#2      CCCTGGAGCACGCGGCCATCTTCTCATGCCACGGCGAGGGCTTCAGGAGCGGCGGCGGCG 486
                       **     *** **  ** **  ***       **   * *    *   * * * *     

consensus_10989#0      -CAAAAGAGAAGCTTTTCTGCATAGGTT-TCCAATTTTGCCTGTAAGGGGAACATTCTTT 1416
consensus_10989#3      -CAAAAGAGAAGCTTTTCTGCATAGGTT-TCCAATTTTGCCTGTAAGGGGAACATTCTTT 411
consensus_10989#4      -CAAA-GAGAAGCTTTTCTGCATAGGTT-TCCAATTTTGCCTGTAAGGGGAACATTCTTT 398
consensus_10989#1      -CAAAAGAGAAGCTTTTCTGCATAGGTT-TCCAATTTTGCCTGTAAGGGGAACATTCTTT 594
consensus_10989#2      GCGGCGGACTGGCTCAGTGGCGGCGGTGGTGGGAGCCCGGAGGCGAGGGGGAGGGTTTTA 546
                        *    **   ***     **   ***  *   *    *   *  ***** *   * ** 

consensus_10989#0      GTAGAAAGGGGATCAACCGCAGTATTGCGTTCATTGGTTCATTCATTCTTTCGTAGCATG 1476
consensus_10989#3      GTAGAAAGGGGATCAACCGCAGTATTGCGTTCATTGGTTCATTCATCCTTTCGTAGCATG 471
consensus_10989#4      GTAGAAAGGGGATCAACCGCAGTATTGCGTTCATTGGTTCATTCATTCTTTCGTAGCATG 458
consensus_10989#1      GTAGAAAGGGGATCAACCGCAGTATTGCGTTCATTGGTTCATTCATTCTTTCGTAGCATG 654
consensus_10989#2      AAGGGGCGGTGGCGAAGAGGGAAACCGCGGGCATCATCCGAACCAGCGAGAGAGCGATTG 606
                          *   ** *   **  *    *  ***  ***      *  **          *  **

consensus_10989#0      TTTTCCTTCC-GCGGCTTAGCGTTTTATCGTTCCGGACTGCTGTTTGATCAATTAGGCGA 1535
consensus_10989#3      TTTTCCTTCC-GCGGCTTAGCGTTTTATCGTTCCGGACTGCTGTTTGATCAATTAGGCGA 530
consensus_10989#4      TTTTCCTTCCCGCGGCTTAGCGTTTTATCGTTCAAAAA---------------------- 496
consensus_10989#1      TTTTCCTTCC-GCGGCTTAGCGTTTTATCGTTCCGGACTGCTGTTTGATCAATTAGGCGA 713
consensus_10989#2      ATTGCGAATCAGCT-CGCGGAAATGAGGAGACATAAATGAGCAAGCGTTTTTTT------ 659
                        ** *    * **  *   *   *     *      *                       

consensus_10989#0      AATAATCAGTGGCTCGCGATCATATTGTCTCTATGCTTATCCATGTGCATTTTTGCATAA 1595
consensus_10989#3      AATAATCAGTGGCTCGCGATCATATTGTCTCTAAAAAAAAAAAAAAAAA----------- 579
consensus_10989#4      ------------------------------------------------------------
consensus_10989#1      AATAATCAGTGG------------------------------------------------ 725
consensus_10989#2      ------------------------------------------------------------
                                                                                   

consensus_10989#0      AAGCTCCGTATAAATAACGGAGGAGAAAGCTCTCAATGATATCCACGCGNTTTT 1649
consensus_10989#3      ------------------------------------------------------
consensus_10989#4      ------------------------------------------------------
consensus_10989#1      ------------------------------------------------------
consensus_10989#2      ------------------------------------------------------
                                                                             




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)