These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10993#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1273 fasta sequence [ACTTGGTCGCCACGGAAGCGCAGCATCAACAAAGGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGTTGGTGGTGGTGGTGTGTCATCACCAACATTTTCACGAGAGGAGAAGGATGGAAATGGCGGCGGCGGTTGGGGGCAGCGGGAGGAGGGACGCGGAGGCGGAGCTGAACCTGCCGCCGGGCTTCCGTTTCCACCCGACCGACGAGGAGCTCGTGGTGCACTACCTCTGCCGCAAGGTTGCCCGGCAGCCGCTCCCCGTCCCAATCATCGCCGAGGTCGACCTCTACAAGCTCGACCCCTGGGATCTCCCTGAGAAGGCGTTGTT-CGGGAGGAAAGAGTGGTACTTCTTCACGCCGAGGGACCGGAAGTACCCGAACGGGTCGAGGCCGAACCGCGCAGCGGGGAGAGGGTAC-TGGAAGGCGACGGGAGCCGACAAGCCGG-TGGCGCCCAAGGGGAGCGCGAGGACGGTGGGGATCAAGAAGGCGCTCGTGTTCTACTCCGGGAAGGCGCCGAGGGGGGTCAAGACGGACTGGATCATGCACGAGTACCGCCTCGCCGACGCCGACCGCGCCCCGGGCGGCAAGAAGGGCTCACAGAAGCTGGACGGGTGGGTGCTGTGCCGGCTGTACAACAAGAAGAACAACTGGGAGAAGGTGAAGCTGGAGCAGCAGGACGTGGCCTCCGTGGCGGCGGCGGCGCCGCGCAACCACCACCATCAGAACG-GCGAGGTCATGGACGCGGCGGCGGCTGACACCATGTCCGACAGCTTCCAGACGCACGACTCCGACATCGACAACGCCTCCGCCGGCCTGCGGCACGGTGGCTGCGGCGGCGGCGGCTT-CGGCGACGTGGCGCCGCCGAGGAATGGGTTCGTGACGGTGAAGGAGGACAACGACTGGTTCACCGGCCTCAACTTCGACGAGCTGCAGCCGCCGTACATGATGAACCTGCAGCACATGCAGATGCAGATGGTGAATCCGGCGGCGCCAGGGCACGACGGCGGCTACTTGCAGTCCATCAGCTCGCCGCAGATGAAGATGTGGCAGACAATCCTGCCACCATTCTGAGATGGATGGAGCAAGAAAAAGGTTGCTGTAGATAAAGGGCGGAAATAGGAGTGATGGCTAGAAAATTATTAGATTTACTAGAACGAAAATGATTAGAAATCTGGCAAGCATGATTCTGCAAATGTGGTGGTAGATGCTTGCAGTATGTAATTCATTTGTTCAGTATATGCATTTGGTAATCTGCAAAACAAAAAAAAAAAAAAA] [+] EMBL AK073848 [ACTTGGTCGCCACGGAAGCGCAGCATCAACAAAGGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGTTGGTGGTGGTGGTGTGTCATCACCAACATTTTCACGAGAGGAGAAGGATGGAAATGGCGGCGGCGGTTGGGGGCAGCGGGAGGAGGGACGCGGAGGCGGAGCTGAACCTGCCGCCGGGCTTCCGTTTCCACCCGACCGACGAGGAGCTCGTGGTGCACTACCTCTGCCGCAAGGTTGCCCGGCAGCCGCTCCCCGTCCCAATCATCGCCGAGGTCGACCTCTACAAGCTCGACCCCTGGGATCTCCCTGAGAAGGCGTTGTT CGGGAGGAAAGAGTGGTACTTCTTCACGCCGAGGGACCGGAAGTACCCGAACGGGTCGAGGCCGAACCGCGCAGCGGGGAGAGGGTAC TGGAAGGCGACGGGAGCCGACAAGCCGG TGGCGCCCAAGGGGAGCGCGAGGACGGTGGGGATCAAGAAGGCGCTCGTGTTCTACTCCGGGAAGGCGCCGAGGGGGGTCAAGACGGACTGGATCATGCACGAGTACCGCCTCGCCGACGCCGACCGCGCCCCGGGCGGCAAGAAGGGCTCACAGAAGCTGGACGGGTGGGTGCTGTGCCGGCTGTACAACAAGAAGAACAACTGGGAGAAGGTGAAGCTGGAGCAGCAGGACGTGGCCTCCGTGGCGGCGGCGGCGCCGCGCAACCACCACCATCAGAACG GCGAGGTCATGGACGCGGCGGCGGCTGACACCATGTCCGACAGCTTCCAGACGCACGACTCCGACATCGACAACGCCTCCGCCGGCCTGCGGCACGGTGGCTGCGGCGGCGGCGGCTT CGGCGACGTGGCGCCGCCGAGGAATGGGTTCGTGACGGTGAAGGAGGACAACGACTGGTTCACCGGCCTCAACTTCGACGAGCTGCAGCCGCCGTACATGATGAACCTGCAGCACATGCAGATGCAGATGGTGAATCCGGCGGCGCCAGGGCACGACGGCGGCTACTTGCAGTCCATCAGCTCGCGGCAGATGAAGATGTGGCAGACAATCCTGCCACCATTCTGAGATGGATGGAGCAAGAAAAAGGTTGCTGTAGATAAAGGGCGGAAATAGGAGTGATGGCTAGAAAATTATTAGATTTACTAGAACGAAAATGATTAGAAATCTGGCAAGCATGATTCTGCAAATGTGGTGGTAGATGCTTGCAGTATGTAATTCATTTGTTCAGTATATGCATTTGGTAATCTGCAAAACAtctcc ] [+] EMBL AB028183 [ ACAAAGGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGTTGGTGGTGGTGGTGTGTCATCACCAACATTTTCACGAGAGGAGAAGGATGGAAATGGCGGCGGCGGTTGGGGGCAGCGGGAGGAGGGACGCGGAGGCGGAGCTGAACCTGCCGCCGGGCTTCCGTTTCCACCCGACCGACGAGGAGCTCGTGGTGCACTACCTCTGCCGCAAGGTTGCCCGGCAGCCGCTCCCCGTCCCAATCATCGCCGAGGTCGACCTCTACAAGCTCGACCCCTGGGATCTCCCTGAGAAGGCGTTGTT CGGGAGGAAAGAGTGGTACTTCTTCACGCCGAGGGACCGGAAGTACCCGAACGGGTCGAGGCCGAACCGCGCAGCGGGGAGAGGGTAC TGGAAGGCGACGGGAGCCGACAAGCCGG TGGCGCCCAAGGGGAGCGCGAGGACGGTGGGGATCAAGAAGGCGCTCGTGTTCTACTCCGGGAAGGCGCCGAGGGGGGTCAAGACGGACTGGATCATGCACGAGTACCGCCTCGCCGACGCCGACCGCGCCCCGGGCGGCAAGAAGGGCTCACAGAAGCTGGACGAGTGGGTGCTGTGCCGGCTGTACAACAAGAAGAACAACTGGGAGAAGGTGAAGCTGGAGCAGCAGGACGTGGCCTCCGTGGCGGCGGCGGCGCCGCGCAACCACCACCATCAGAACG GCGAGGTCATGGACGCGGCGGCGGCTGACACCATGTCCGACAGCTTCCAGACGCACGACTCCGACATCGACAACGCCTCCGCCGGCCTGCGGCACGGTGGCTGCGGCGGCGGCGGCTT CGGCGACGTGGCGCCGCCGAGGAATGGGTTCGTGACGGTGAAGGAGGACAACGACTGGTTCACCGGCCTCAACTTCGACGAGCTGCAGCCGCCGTACATGATGAACCTGCAGCACATGCAGATGCAGATGGTGAATCCGGCGGCGCCAGGGCACGACGGCGGCTACTTGCAGTCCATCAGCTCGCCGCAGATGAAGATGTGGCAGACAATCCTGCCACCATTCTGAGATGGATGGAGCAAGAAAAAGGTTGCTGTAGATAAAGGGCGGAAATAGGAGTGATGGCTAGAAAATTATTAGATTTACTAGAACGAAAATGATTAGAAATCTGGCAAGCATGATTCTGCAAATGTGGTGGTAGATGCTTGCAGTATGTAATTCATTTGTTCAGTATATGCATTTGGTAATCTGCAAAACAAAAAAAAAAAAAAA] [+] EMBL OSC100121 [ ACAAAGGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGTTGGTGGTGGTGGTGTGTCATCACCAACATTTTCACGAGAGGAGAAGGATGGAAATGGCGGCGGCGGTTGGGGGCANCGGGAGGAGGGACGCGGAGGCGGAGCTGAACCTGCCGNCGGGCTTCCGTTTCCACCCGACCGACGAGGAGCTCGTGGTGCACTACCTCTGCCGCAAGGTTGCCCGGCAGCCGCTCCCCGTCCCAATCATCGNCGAGGTCGACCTCTACAAGCTCGACCCCTGGGATCTCCCTGAGAAGNCGTTGTTCCGGGAGGAAAGAGTGGTACTTCTTCACGTCG ] [+] EMBL AU062636 [ GCAGCAGCAGCAGCAGCGTTGGTGGTGGTGGTGTGTCATCACCAACATTTTCACGAGAGGAGAAGGATGGAAATGGCGGCGGCGGTTGGGGGCAGCGGGAGGAGGGACGCGGAGGCGGAGCTGAACCTGCCGCCGGGCTTCCGTTTCCACCCGACCGACGAGGAGCTCGTGGTGCACTACCTCTGCCGCAAGGTTGCCCGGCAGCCGCTCCCCGTCCCAATCATCGCCGAGGTCGACCTCTACAAGCTCGACCCCTGGGATCTCCCTGAGAAGGCGTTGTT CGGGAGGAAAGAGTGGTACTTCTTCACGCCGAGGGACCGGAAGTACCCGAACGGGTCGAGGCCGAACCGCGCAG GGGANGAGGGTACTTNGAAGGCGACGGGAGCCGACAAGCCGGTTNGCG CCAAGGGGAGCTC AAGACGTTGGGata ] [+] EMBL AU075972 [ GAACGNCCGAGGTCATGGACNCGGCGGCGGCTGACACCATGTCCGACAGCTTCCAGACGCACGANTCCGACATCGACAACGCCTCCGCCCGCCTGCGGCACGGTGGCTGCGGCGGCGGCGGCTT CGGCGACGTGGCGCCGCCGAGGAATGGGTTCGTGACGGTGAAGGAGGACAACGACTGGTTCACCGGCCTCAACTTCGACGAGCTGCAGCCGCCGTACATGATGAACCTGCAGCACATGCAGATGCAGATGGTGAATCCGGCGGCGCCAGGGCACGACGGCGGCTACTTGCAGTCCATCAGCTCGCCGCAGATGAAGATGTGGCAGACAATCCTGCCACCATTCTGAGATGGATGGAGCAAGAAAAAGGTTGCTGTAGATAAAGGGCGGAAATAGGAGTGATGGCTAGAAAATTATTAGATTTACTAGAACGAAAATGATTAGAAATCTGGCAAGCATGATTCTGCAAATGTGGTGGTAGATGCTTGCAGTATGTAATTCATTTGTTCAGTATATGCATTTGGTAATCTGCAAAACAAAAAAAAAAAAAAA] [+] EMBL AU102179 [ CTGACACCATGTCCGACAGCTTCCAGACGCACGACTCCGACATCGACAACGCCTCCGCC GCCTGCGGCACGGTGGCTGCGGCGGCGNCGGCTTNCGGCGACGTGGCGCCGCCGAGGAATGGGTTCNTGACGGTGAAGGAGGACAACGACTGGTTCACCGGCCTCAA TTCGACGAGCTGCAGCCGCCGTACATGNTGAACCTGCAGCACATGCAGATGCAGATGGTGAATCCGGCGGCGCCAGGGCACGACGGCGGCTACTTGCAGTCCATCAGCTCGCCGCAGATGAAGATGTGGCAGACAATCCTGCCACCATTCTGAGATGGATGGAGCAAGAAAAAGGTTGCTGTAGATAAAGGGCGGAAATAGGAGTGATGGCTAGAAAATTATTAGATTTACTAGAACGAAAATGATTAGAAATCTGGCAAGCATGATTCTGCAAATGTGGTGGTAGATGCTTGCAGTATGTAATTCATTTGTTCAGTATATGCATTTGGTAATCTGCAAAAaa ] consensusID : consensus_10993#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 523 fasta sequence [CGGTGGCTGCGGCGGCGGCGGCTTTGGGCGACGTGGCGCCGCCAAAGAATGGGTTTCGTGACGGTAAAGGAGGCCAACGGATTGTTCCCCGGCCTCAATTTTGACAACTCACACCCCCGGTACATAATGACCTTCCAGCACATGCAGATGCAGATGGTGAATCCGGCGGCGCCAGGGCACGACGGCGGCTACTTGCAGTCCATCAGCTCGCCGCAGATGAAGATGTGGCAGACAATCCTGCCACCATTTTGAGATGGATGGAGCAAGAAAAAAGGTTGCTGTAGATAAAGGGCGGAAATAGGAGTGATGGCTAGAAAATTATTAGATTTACTAGAACGAAAATGATTAGAAATCTGGCAAGCATGATTCTGCAAATGTGGTGGTAGATGCTTGCAGTATGTAATTCATTTGTTCAGTATATGCATTTGGTAATCTGCAAAACATCTCCTTTTGTTCTCATATCCTAAGCGAAACATATATGATTTTATCCTTCAAAAAAAAAAAAAAAAAAACTCGAGACTAG] [-] EMBL AW155601 [CGGTGGCTGCGGCGGCGGCGGCTTTGGGCGACGTGGCGCCGCCAAAGAATGGGTTTCGTGACGGTAAAGGAGGCCAACGGATTGTTCCCCGGCCTCAATTTTGACAACTCACACCCCCGGTACATAATGACCTTCCAGCACATGCAGATGCAGATGGTGAATCCGGCGGCGCCAGGGCACGACGGCGGCTACTTGCAGTCCATCAGCTCGCCGCAGATGAAGATGTGGCAGACAATCCTGCCACCATTTTGAGATGGATGGAGCAAGAAAAAAGGTTGCTGTAGATAAAGGGCGGAAATAGGAGTGATGGCTAGAAAATTATTAGATTTACTAGAACGAAAATGATTAGAAATCTGGCAAGCATGATTCTGCAAATGTGGTGGTAGATGCTTGCAGTATGTAATTCATTTGTTCAGTATATGCATTTGGTAATCTGCAAAACATCTCCTTTTGTTCTCATATCCTAAGCGAAACATATATGATTTTATCCTTCAAAAAAAAAAAAAAAAAAACTCGAGACTAG] [+] EMBL AU056580 [ TGCAGATGNTGAATCCGGCGGCGCCAGGGCACGACGGCGGCTACTTGCAGTCCATCAGCTCNCCGCAGATGAAGATGTGGCAGACAATCCTGCCACCATTCTGAGATGGATGGAGCAAG AAAAAGGTTGCTGTAGATAAAGGGCGGAAATAGGAGTGATGGCTAGAAAATTATTAGATTTACTAGAACGAAAATGATTAGAAATCTGGCAAGCATGATTCTGCAAATGTGGTGGTAGATGCTTGCAGTATGTAATTCATTTGTTCAGTATATGCATTTGGTAATCTGCAAAACATCTCCTTTTGTTCTCATAaaaaaaa ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10993#0 ACTTGGTCGCCACGGAAGCGCAGCATCAACAAAGGCAGCAGCAGCAGCAGCAGCAGCAGC 60 consensus_10993#1 ------------------------------------------------------------ consensus_10993#0 AGCGTTGGTGGTGGTGGTGTGTCATCACCAACATTTTCACGAGAGGAGAAGGATGGAAAT 120 consensus_10993#1 ------------------------------------------------------------ consensus_10993#0 GGCGGCGGCGGTTGGGGGCAGCGGGAGGAGGGACGCGGAGGCGGAGCTGAACCTGCCGCC 180 consensus_10993#1 ------------------------------------------------------------ consensus_10993#0 GGGCTTCCGTTTCCACCCGACCGACGAGGAGCTCGTGGTGCACTACCTCTGCCGCAAGGT 240 consensus_10993#1 ------------------------------------------------------------ consensus_10993#0 TGCCCGGCAGCCGCTCCCCGTCCCAATCATCGCCGAGGTCGACCTCTACAAGCTCGACCC 300 consensus_10993#1 ------------------------------------------------------------ consensus_10993#0 CTGGGATCTCCCTGAGAAGGCGTTGTTCGGGAGGAAAGAGTGGTACTTCTTCACGCCGAG 360 consensus_10993#1 ------------------------------------------------------------ consensus_10993#0 GGACCGGAAGTACCCGAACGGGTCGAGGCCGAACCGCGCAGCGGGGAGAGGGTACTGGAA 420 consensus_10993#1 ------------------------------------------------------------ consensus_10993#0 GGCGACGGGAGCCGACAAGCCGGTGGCGCCCAAGGGGAGCGCGAGGACGGTGGGGATCAA 480 consensus_10993#1 ------------------------------------------------------------ consensus_10993#0 GAAGGCGCTCGTGTTCTACTCCGGGAAGGCGCCGAGGGGGGTCAAGACGGACTGGATCAT 540 consensus_10993#1 ------------------------------------------------------------ consensus_10993#0 GCACGAGTACCGCCTCGCCGACGCCGACCGCGCCCCGGGCGGCAAGAAGGGCTCACAGAA 600 consensus_10993#1 ------------------------------------------------------------ consensus_10993#0 GCTGGACGGGTGGGTGCTGTGCCGGCTGTACAACAAGAAGAACAACTGGGAGAAGGTGAA 660 consensus_10993#1 ------------------------------------------------------------ consensus_10993#0 GCTGGAGCAGCAGGACGTGGCCTCCGTGGCGGCGGCGGCGCCGCGCAACCACCACCATCA 720 consensus_10993#1 ------------------------------------------------------------ consensus_10993#0 GAACGGCGAGGTCATGGACGCGGCGGCGGCTGACACCATGTCCGACAGCTTCCAGACGCA 780 consensus_10993#1 ------------------------------------------------------------ consensus_10993#0 CGACTCCGACATCGACAACGCCTCCGCCGGCCTGCGGCACGGTGGCTGCGGCGGCGGCGG 840 consensus_10993#1 ---------------------------------------CGGTGGCTGCGGCGGCGGCGG 21 ********************* consensus_10993#0 CTTCGG-CGACGTGGCGCCGCCGAGGAATGGGTT-CGTGACGGTGAAGGAGGACAACGAC 898 consensus_10993#1 CTTTGGGCGACGTGGCGCCGCCAAAGAATGGGTTTCGTGACGGTAAAGGAGGCCAACGGA 81 *** ** *************** * ********* ********* ******* ***** consensus_10993#0 TGGTTCACCGGCCTCAACTTCGACGAGCTGCAGCCGCCGTACATGATGAACCTGCAGCAC 958 consensus_10993#1 TTGTTCCCCGGCCTCAATTTTGACAACTCACACCCCCGGTACATAATGACCTTCCAGCAC 141 * **** ********** ** *** * ** ** * ****** **** * * ****** consensus_10993#0 ATGCAGATGCAGATGGTGAATCCGGCGGCGCCAGGGCACGACGGCGGCTACTTGCAGTCC 1018 consensus_10993#1 ATGCAGATGCAGATGGTGAATCCGGCGGCGCCAGGGCACGACGGCGGCTACTTGCAGTCC 201 ************************************************************ consensus_10993#0 ATCAGCTCGCCGCAGATGAAGATGTGGCAGACAATCCTGCCACCATTCTGAGATGGATGG 1078 consensus_10993#1 ATCAGCTCGCCGCAGATGAAGATGTGGCAGACAATCCTGCCACCATTTTGAGATGGATGG 261 *********************************************** ************ consensus_10993#0 AGCAAGAAAAA-GGTTGCTGTAGATAAAGGGCGGAAATAGGAGTGATGGCTAGAAAATTA 1137 consensus_10993#1 AGCAAGAAAAAAGGTTGCTGTAGATAAAGGGCGGAAATAGGAGTGATGGCTAGAAAATTA 321 *********** ************************************************ consensus_10993#0 TTAGATTTACTAGAACGAAAATGATTAGAAATCTGGCAAGCATGATTCTGCAAATGTGGT 1197 consensus_10993#1 TTAGATTTACTAGAACGAAAATGATTAGAAATCTGGCAAGCATGATTCTGCAAATGTGGT 381 ************************************************************ consensus_10993#0 GGTAGATGCTTGCAGTATGTAATTCATTTGTTCAGTATATGCATTTGGTAATCTGCAAAA 1257 consensus_10993#1 GGTAGATGCTTGCAGTATGTAATTCATTTGTTCAGTATATGCATTTGGTAATCTGCAAAA 441 ************************************************************ consensus_10993#0 CAAAAAAAAAAAAAAA-------------------------------------------- 1273 consensus_10993#1 CATCTCCTTTTGTTCTCATATCCTAAGCGAAACATATATGATTTTATCCTTCAAAAAAAA 501 ** consensus_10993#0 ---------------------- consensus_10993#1 AAAAAAAAAAACTCGAGACTAG 523 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||