These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 749 fasta sequence [GAGTCAAGGCTCACAGAAATCTCACCACAGATAATCTTGTTAGTTTCTTGAGAAAGATGGAAGCTGCAGATGTAGCCAAGGAACATCACAAGGAGGAGAAAAAGGACAAGGAACACGCCAAAGAGGCGAAACCGGAGAAGGAGAAGAAGGAGAAGAAAGAGAAGAACGGCGAAGAGGCGGCGAAACCGGCCAAGGAGAAGAAGGAGAAGAAAGAGAAGAAGGAGAAGGGCAAGGAGAAGAAGGAGAAGGTGGAGGAGACGACGGACGTGGCCAAGCTGCGAGCCAAGCTGGAGAAGCTGGACGCCAAGATCGACGACCTCAAGGCCAAGAAGCAGGAGATCGTGGCCCGACTCGTCCAGCTCGAGGAGGGTGCGACGGCAAATGCTGCTGCTGCAGATGCGGCACCACCTGCCAGCGGCTGAGGAGGAGGTGATCTGGGATTCTTAGGCAGTTCTTGCAATTGGACAAGAGGAGAAATTACAAACATTTTCAGACATTTGCAGGATTTGCAGCTAGTGACGATCTGTTTCTGAATGGAAGCTTTGGTACAGAAATTTTTGCCTTCTTACGATGATGATGGTCTCAAGTCGTCTTTGCTGAAGACCATGGCGCCATTGAGTGTTGCTTGTATGATATGATCAGGAAGTGAAATTTATAGCGCAAATGAGTTTCATTTGCAAGATGGTGTTGGAGATTATGTATGTGTCACGATAATTTTACGACAAGATCGATTCAAATTTTCTAAAAGA] [+] EMBL AK072742 [GAGTCAAGGCTCACAGAAATCTCACCACAGATAATCTTGTTAGTTTCTTGAGAAAGATGGAAGCTGCAGATGTAGCCAAGGAACATCACAAGGAGGAGAAAAAGGACAAGGAACACGCCAAAGAGGCGAAACCGGAGAAGGAGAAGAAGGAGAAGAAAGAGAAGAACGGCGAAGAGGCGGCGAAACCGGCCAAGGAGAAGAAGGAGAAGAAAGAGAAGAAGGAGAAGGGCAAGGAGAAGAAGGAGAAGGTGGAGGAGACGACGGACGTGGCCAAGCTGCGAGCCAAGCTGGAGAAGCTGGACGCCAAGATCGACGACCTCAAGGCCAAGAAGCAGGAGATCGTGGCCCGACTCGTCCAGCTCGAGGAGGGTGCGACGGCAAATGCTGCTGCTGCAGATGCGGCACCACCTGCCAGCGGCTGAGGAGGAGGTGATCTGGGATTCTTAGGCAGTTCTTGCAATTGGACAAGAGGAGAAATTACAAACATTTTCAGACATTTGCAGGATTTGCAGCTAGTGACGATCTGTTTCTGAATGGAAGCTTTGGTACAGAAATTTTTGCCTTCTTACGATGATGATGGTCTCAAGTCGTCTTTGCTGAAGACCATGGCGCCATTGAGTGTTGCTTGTATGATATGATCAGGAAGTGAAATTTATAGCGCAAATGAGTTTCATTTGCAAGATGGTGTTGGAGATTATGTATGTGTCACGATAATTTTACGACAAGATCGATTCAAATTTTCTAAAAGA] consensusID : consensus_11#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 257 fasta sequence [AGAGGACGAGACAAGGGGAGAAATTACAAACATTTTCAGACATTTGCAGGATTTGCAGCTAGTGACGATCTGTTTCTGAATGGAAGCTTTGGTACAGAAATTTTTGCCTTCTTACGATGATGATGGTCTCAAGTCGTCTTTGCTGAAGACCATGGCGCCATTGAGTGTTGCTTGTATGATATGATCAGGAAGTGAAATTTATAGCGCAAATGAGTTTCATTTGCAAGATGGTGTTGGAGATTAAAAAAAAAGAAAAA] [-] EMBL CA761512 [AGAGGACGAGACAAGGGGAGAAATTACAAACATTTTCAGACATTTGCAGGATTTGCAGCTAGTGACGATCTGTTTCTGAATGGAAGCTTTGGTACAGAAATTTTTGCCTTCTTACGATGATGATGGTCTCAAGTCGTCTTTGCTGAAGACCATGGCGCCATTGAGTGTTGCTTGTATGATATGATCAGGAAGTGAAATTTATAGCGCAAATGAGTTTCATTTGCAAGATGGTGTTGGAGATTAAAAAAAAAGAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11#0 GAGTCAAGGCTCACAGAAATCTCACCACAGATAATCTTGTTAGTTTCTTGAGAAAGATGG 60 consensus_11#1 ------------------------------------------------------------ consensus_11#0 AAGCTGCAGATGTAGCCAAGGAACATCACAAGGAGGAGAAAAAGGACAAGGAACACGCCA 120 consensus_11#1 ------------------------------------------------------------ consensus_11#0 AAGAGGCGAAACCGGAGAAGGAGAAGAAGGAGAAGAAAGAGAAGAACGGCGAAGAGGCGG 180 consensus_11#1 ------------------------------------------------------------ consensus_11#0 CGAAACCGGCCAAGGAGAAGAAGGAGAAGAAAGAGAAGAAGGAGAAGGGCAAGGAGAAGA 240 consensus_11#1 ------------------------------------------------------------ consensus_11#0 AGGAGAAGGTGGAGGAGACGACGGACGTGGCCAAGCTGCGAGCCAAGCTGGAGAAGCTGG 300 consensus_11#1 ------------------------------------------------------------ consensus_11#0 ACGCCAAGATCGACGACCTCAAGGCCAAGAAGCAGGAGATCGTGGCCCGACTCGTCCAGC 360 consensus_11#1 ------------------------------------------------------------ consensus_11#0 TCGAGGAGGGTGCGACGGCAAATGCTGCTGCTGCAGATGCGGCACCACCTGCCAGCGGCT 420 consensus_11#1 ------------------------------------------------------------ consensus_11#0 GAGGAGGAGGTGATCTGGGATTCTTAGGCAGTTCTTGCAATTGGACAAGAGGAGAAATTA 480 consensus_11#1 ----------------------------------AGAGGACGAGACAAGGGGAGAAATTA 26 * ****** ********** consensus_11#0 CAAACATTTTCAGACATTTGCAGGATTTGCAGCTAGTGACGATCTGTTTCTGAATGGAAG 540 consensus_11#1 CAAACATTTTCAGACATTTGCAGGATTTGCAGCTAGTGACGATCTGTTTCTGAATGGAAG 86 ************************************************************ consensus_11#0 CTTTGGTACAGAAATTTTTGCCTTCTTACGATGATGATGGTCTCAAGTCGTCTTTGCTGA 600 consensus_11#1 CTTTGGTACAGAAATTTTTGCCTTCTTACGATGATGATGGTCTCAAGTCGTCTTTGCTGA 146 ************************************************************ consensus_11#0 AGACCATGGCGCCATTGAGTGTTGCTTGTATGATATGATCAGGAAGTGAAATTTATAGCG 660 consensus_11#1 AGACCATGGCGCCATTGAGTGTTGCTTGTATGATATGATCAGGAAGTGAAATTTATAGCG 206 ************************************************************ consensus_11#0 CAAATGAGTTTCATTTGCAAGATGGTGTTGGAGATTATGTATGTGTCACGATAATTTTAC 720 consensus_11#1 CAAATGAGTTTCATTTGCAAGATGGTGTTGGAGATTAAAAAAAAAGAAAAA--------- 257 ************************************* * * * consensus_11#0 GACAAGATCGATTCAAATTTTCTAAAAGA 749 consensus_11#1 ----------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||