|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1100#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1200 fasta sequence
[ACCGCCATCCTGACCAGTGCTCTCCATCGCCCTCGATGAGCTGCTACGGGTGAGTTGAGAAGCCGCCGCCGCGGCGGCGGTTTTCTGGGCCTCATGAGGGCTGCTTGCAACTGCAACACCTGCCTCTTGCTGGGAAGGAGCAATCGCCGCTGCTGGAGCTGGAGTAGGGGCTGCTGCTTCTTGAGCTTCGCTAGGGTCAATGTGGGTGCTCTTCTCTTTGGAGCCAACTGTTATAACATCAAGCACACAACATGCATTAGGCATTTTTTCGGGTACGGAAAGAAGGGATACCCAGATGGCGGAAGTTTGATGCGATACCTTGGGGAGAAACTGTGGTTTGCTGTGAAGCTGTCGCTGTCGATGTCGGGGCTCCTCTTTTACTTCTTGACTGCAACAAGAACGGGTAGGCGTTAGTTGAGGTGAAGGGGGAAGGTTATATGGTTAAATACTGGGCATCATGTTCATACCTTCATCTCATCGCAGTACTTTACAACGGCTGATATATTGGAGTAACGGCCGTGGACCAAGGTATAAACCCATAGAAGGAGCTTCCTTGGAATACTGAGGTCAAGGTTCTCAATTGCGTCTGGGGCTTGCTGTAGGCCTTCAACAGGTGGCTGCGATGGGGTGACTGTGTACAGATTAATACCCGATGGGAATGTTCCGCAAGAGCTCCCCCGATAGAAGTTGTAGGTGCTCTTCATGACAGTAACAGCAGTCTCCATGTTATCTTCGGATGTTTGCCTGATCGGAATGTTCTTAATTCTGTTAAAAGTCTCAAACCAGTTCATATCGAGGCCTTTGAATTGAGCAGGCCCATCAGGAGACGAGATGAGAAGCTCATCAGGTTGCAAGTCGATGTAAAGCACTAGACCGCTGGATAGTGGAGCAGGCTGATCAGTCGTTTCCATGGATTCAGGCAGTGGAGTGATGGATGCAAGTTTGATGAGAATACAACGGCACCATGCCAGAGAAGCGTGCTTGCATATCTTGGCGAAATTGCTGTTTGACAGTTTGGGTGTTTTAAAACGCTTTCTTATCTTCTCATTTAGTCCTTCAAGAACATCCAGTCGGACATCACTCTCAAGCAAATGGATGTATTGGTGGATATAACTGCCACAAGGAAATAAAGTATGAAAACCATCTGGCTTGAGTAACTATGTATTTTGCACTCTAATCTAGTAATTACCTGTAAAGATT]
[+] EMBL AK058278 [ACCGCCATCCTGACCAGTGCTCTCCATCGCCCTCGATGAGCTGCTACGGGTGAGTTGAGAAGCCGCCGCCGCGGCGGCGGTTTTCTGGGCCTCATGAGGGCTGCTTGCAACTGCAACACCTGCCTCTTGCTGGGAAGGAGCAATCGCCGCTGCTGGAGCTGGAGTAGGGGCTGCTGCTTCTTGAGCTTCGCTAGGGTCAATGTGGGTGCTCTTCTCTTTGGAGCCAACTGTTATAACATCAAGCACACAACATGCATTAGGCATTTTTTCGGGTACGGAAAGAAGGGATACCCAGATGGCGGAAGTTTGATGCGATACCTTGGGGAGAAACTGTGGTTTGCTGTGAAGCTGTCGCTGTCGATGTCGGGGCTCCTCTTTTACTTCTTGACTGCAACAAGAACGGGTAGGCGTTAGTTGAGGTGAAGGGGGAAGGTTATATGGTTAAATACTGGGCATCATGTTCATACCTTCATCTCATCGCAGTACTTTACAACGGCTGATATATTGGAGTAACGGCCGTGGACCAAGGTATAAACCCATAGAAGGAGCTTCCTTGGAATACTGAGGTCAAGGTTCTCAATTGCGTCTGGGGCTTGCTGTAGGCCTTCAACAGGTGGCTGCGATGGGGTGACTGTGTACAGATTAATACCCGATGGGAATGTTCCGCAAGAGCTCCCCCGATAGAAGTTGTAGGTGCTCTTCATGACAGTAACAGCAGTCTCCATGTTATCTTCGGATGTTTGCCTGATCGGAATGTTCTTAATTCTGTTAAAAGTCTCAAACCAGTTCATATCGAGGCCTTTGAATTGAGCAGGCCCATCAGGAGACGAGATGAGAAGCTCATCAGGTTGCAAGTCGATGTAAAGCACTAGACCGCTGGATAGTGGAGCAGGCTGATCAGTCGTTTCCATGGATTCAGGCAGTGGAGTGATGGATGCAAGTTTGATGAGAATACAACGGCACCATGCCAGAGAAGCGTGCTTGCATATCTTGGCGAAATTGCTGTTTGACAGTTTGGGTGTTTTAAAACGCTTTCTTATCTTCTCATTTAGTCCTTCAAGAACATCCAGTCGGACATCACTCTCAAGCAAATGGATGTATTGGTGGATATAACTGCCACAAGGAAATAAAGTATGAAAACCATCTGGCTTGAGTAACTATGTATTTTGCACTCTAATCTAGTAATTACCTGTAAAGATT]
consensusID : consensus_1100#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 640 fasta sequence
[TGCGATGGGTGACTGGTACAGATAATACCCGATGGAATGTTCNGCAGAGCTCTCCCGATAGAAGTGTAGGTGCTCTTCATGACAGTNACAGCAGTCTCCATGTTATCTTCGGATGTTTGCCTGATCGGAATGTTCTTAATTCTGTTAAAAGTCTCANACCAGTTCATATCGAGGCCTTTGAATTGAGCAGGCCCATCAGGAGACGAGATGAGAAGCTCATCAGGTTGCAAGTCGATGTAAAGCACTAGACCGCTGGATAGTGGAGCAGGCTGATCAGTTGTTTCCATGGATTCAGGCAGTGGAGTGATGGATGCAAGTTTGATGAGAATACAACGGCACCATGCCAGAGAAGCGTGCTTGCATATCTTGGCGAAATTGCTGTTTGACAGTTTGGGTGTTTTAAAACGCTTTCTTATCTTCTCATTTAGTCCTTCAAGAACATCCAGTCGGACATCACTCTCAAGCAAATGGATGTATTGGTGGATATAACTGTAAAGATTGCTTTCTGATAGCTCGGGACTATTGACCTCTGGAATAGTGCTTATATCAGCCCATAAGTTTGCATGGTCCATGAACACACCAAACATTTTCTCAAGTAGGTTCTCAACGGAAGCATCGCCAGAAACTCTACGAATCTCAG]
[-] EMBL CA753561 [TGCGATGGGTGACTGGTACAGATAATACCCGATGGAATGTTCNGCAGAGCTCTCCCGATAGAAGTGTAGGTGCTCTTCATGACAGTNACAGCAGTCTCCATGTTATCTTCGGATGTTTGCCTGATCGGAATGTTCTTAATTCTGTTAAAAGTCTCANACCAGTTCATATCGAGGCCTTTGAATTGAGCAGGCCCATCAGGAGACGAGATGAGAAGCTCATCAGGTTGCAAGTCGATGTAAAGCACTAGACCGCTGGATAGTGGAGCAGGCTGATCAGTTGTTTCCATGGATTCAGGCAGTGGAGTGATGGATGCAAGTTTGATGAGAATACAACGGCACCATGCCAGAGAAGCGTGCTTGCATATCTTGGCGAAATTGCTGTTTGACAGTTTGGGTGTTTTAAAACGCTTTCTTATCTTCTCATTTAGTCCTTCAAGAACATCCAGTCGGACATCACTCTCAAGCAAATGGATGTATTGGTGGATATAACTGTAAAGATTGCTTTCTGATAGCTCGGGACTATTGACCTCTGGAATAGTGCTTATATCAGCCCATAAGTTTGCATGGTCCATGAACACACCAAACATTTTCTCAAGTAGGTTCTCAACGGAAGCATCGCCAGAAACTCTACGAATCTCAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1100#0 ACCGCCATCCTGACCAGTGCTCTCCATCGCCCTCGATGAGCTGCTACGGGTGAGTTGAGA 60
consensus_1100#1 ------------------------------------------------------------
consensus_1100#0 AGCCGCCGCCGCGGCGGCGGTTTTCTGGGCCTCATGAGGGCTGCTTGCAACTGCAACACC 120
consensus_1100#1 ------------------------------------------------------------
consensus_1100#0 TGCCTCTTGCTGGGAAGGAGCAATCGCCGCTGCTGGAGCTGGAGTAGGGGCTGCTGCTTC 180
consensus_1100#1 ------------------------------------------------------------
consensus_1100#0 TTGAGCTTCGCTAGGGTCAATGTGGGTGCTCTTCTCTTTGGAGCCAACTGTTATAACATC 240
consensus_1100#1 ------------------------------------------------------------
consensus_1100#0 AAGCACACAACATGCATTAGGCATTTTTTCGGGTACGGAAAGAAGGGATACCCAGATGGC 300
consensus_1100#1 ------------------------------------------------------------
consensus_1100#0 GGAAGTTTGATGCGATACCTTGGGGAGAAACTGTGGTTTGCTGTGAAGCTGTCGCTGTCG 360
consensus_1100#1 ------------------------------------------------------------
consensus_1100#0 ATGTCGGGGCTCCTCTTTTACTTCTTGACTGCAACAAGAACGGGTAGGCGTTAGTTGAGG 420
consensus_1100#1 ------------------------------------------------------------
consensus_1100#0 TGAAGGGGGAAGGTTATATGGTTAAATACTGGGCATCATGTTCATACCTTCATCTCATCG 480
consensus_1100#1 ------------------------------------------------------------
consensus_1100#0 CAGTACTTTACAACGGCTGATATATTGGAGTAACGGCCGTGGACCAAGGTATAAACCCAT 540
consensus_1100#1 ------------------------------------------------------------
consensus_1100#0 AGAAGGAGCTTCCTTGGAATACTGAGGTCAAGGTTCTCAATTGCGTCTGGGGCTTGCTGT 600
consensus_1100#1 ------------------------------------------------------------
consensus_1100#0 AGGCCTTCAACAGGTGGCTGCGATGGGGTGACTGTGTACAGATTAATACCCGATGGGAAT 660
consensus_1100#1 ------------------TGCGATGGG-TGACTG-GTACAGAT-AATACCCGATGG-AAT 38
********* ****** ******** ************ ***
consensus_1100#0 GTTCCGCAAGAGCTCCCCCGATAGAAGTTGTAGGTGCTCTTCATGACAGTAACAGCAGTC 720
consensus_1100#1 GTTCNGCA-GAGCTCTCCCGATAGAAGT-GTAGGTGCTCTTCATGACAGTNACAGCAGTC 96
**** *** ****** ************ ********************* *********
consensus_1100#0 TCCATGTTATCTTCGGATGTTTGCCTGATCGGAATGTTCTTAATTCTGTTAAAAGTCTCA 780
consensus_1100#1 TCCATGTTATCTTCGGATGTTTGCCTGATCGGAATGTTCTTAATTCTGTTAAAAGTCTCA 156
************************************************************
consensus_1100#0 AACCAGTTCATATCGAGGCCTTTGAATTGAGCAGGCCCATCAGGAGACGAGATGAGAAGC 840
consensus_1100#1 NACCAGTTCATATCGAGGCCTTTGAATTGAGCAGGCCCATCAGGAGACGAGATGAGAAGC 216
***********************************************************
consensus_1100#0 TCATCAGGTTGCAAGTCGATGTAAAGCACTAGACCGCTGGATAGTGGAGCAGGCTGATCA 900
consensus_1100#1 TCATCAGGTTGCAAGTCGATGTAAAGCACTAGACCGCTGGATAGTGGAGCAGGCTGATCA 276
************************************************************
consensus_1100#0 GTCGTTTCCATGGATTCAGGCAGTGGAGTGATGGATGCAAGTTTGATGAGAATACAACGG 960
consensus_1100#1 GTTGTTTCCATGGATTCAGGCAGTGGAGTGATGGATGCAAGTTTGATGAGAATACAACGG 336
** *********************************************************
consensus_1100#0 CACCATGCCAGAGAAGCGTGCTTGCATATCTTGGCGAAATTGCTGTTTGACAGTTTGGGT 1020
consensus_1100#1 CACCATGCCAGAGAAGCGTGCTTGCATATCTTGGCGAAATTGCTGTTTGACAGTTTGGGT 396
************************************************************
consensus_1100#0 GTTTTAAAACGCTTTCTTATCTTCTCATTTAGTCCTTCAAGAACATCCAGTCGGACATCA 1080
consensus_1100#1 GTTTTAAAACGCTTTCTTATCTTCTCATTTAGTCCTTCAAGAACATCCAGTCGGACATCA 456
************************************************************
consensus_1100#0 CTCTCAAGCAAATGGATGTATTGGTGGATATAACTGCCACAAGGAAAT---AAAGTATGA 1137
consensus_1100#1 CTCTCAAGCAAATGGATGTATTGGTGGATATAACTGTAAAGATTGCTTTCTGATAGCTCG 516
************************************ * * * * *
consensus_1100#0 AAACCATCTGGCTTGAGTA-ACTATGTATTTTGCACTCTAATCTAGTAATTACCTGTAAA 1196
consensus_1100#1 GGACTATTGACCTCTGGAATAGTGCTTATATCAGCCCATAAGTTTGCA-TGGTCCATGAA 575
** ** ** * * * * *** * * *** * * * * * * **
consensus_1100#0 GATT-------------------------------------------------------- 1200
consensus_1100#1 CACACCAAACATTTTCTCAAGTAGGTTCTCAACGGAAGCATCGCCAGAAACTCTACGAAT 635
*
consensus_1100#0 -----
consensus_1100#1 CTCAG 640
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||