These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11017#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1410 fasta sequence [CCACCCACCCTTCTTCCTTCTCCAGCTCTCGCCTCTCGCCTCGTCCTT-GTTCGTCATCGCGC-TCGCTCGATTTCTCCTCCTCCTCTCTCTCGATCCCCTCTACTGCGAGAGATTCCCTTGCTTGAATTCTCCTCCTCCTCCTCCTCTCCCTCCGGTGAGCGGTGGCGGCGGCGGCGAATCCGAGCTCCTGGTGGTGTCGTGGGGGGCGGGGTGATTCCGTGATGGTCGCCCGCCGCGCTCTGCGGCGG-ACACGGACATGCAGCGCAACCTCTCCTCCATCTCCTCCTCCGCCGCGTCGCCTTCGCCGCTCTCACCGGCCGACGGCTTCCTCTGCGTGAAGGACGGGGTGGACGAGATGATCAAGTACGTGGCCAACG-AG-CCCTCCGTC-GGGCTCT-ACTTCGTCCAGCAGCACGCGCAGGCGTCCATGCCCCTCCTCCTCGACGTCAAGGGAAAGGTTGCAGAAAAGATTCATGAGGTAACATTGCATACTGAAGATATAGAGGACTCTATCTGTGCAGTGAGGTCCATGGCAGAGTTTGGACTTCCAATTGCTGATGATATGATCAAGGACATAAATAAATCTCTCAAGATAATGTCAAAGACCCAACCAAAGAGGGGGTTAATCCAGAACCCCACTTGGGGGTTCCAATCAGGGAAAAGCTCAGGAACATGGGAAGAAGATTTGGGCACAACCGACGGAGGAAGCAGCCGTAATTATTTCTCTTCCATGTTCAACACTGCGAAGCAGAAGGCATCCACTCTCAGATGGCCACAGCCTGATTTCGGAACAAAAGATGACACCACTGAGGAGTCAGAGTCATCTGCAGCTCCTGAATCATCACAAGCTGGTGGACATGGTGCATCGACACCCTCAGATACAGAGAAGGATGATCTTCCTGTTTCAAGCCAGCTTTTAGATAACAATACAGCTACTATGAAGGAGAGCTCTTCGACTGATATCTCCAAATCGGTGGAGAATTATAACAAGTTCAAGGAAGAACAAGAACTCAAACTACAAGAATGGCTTAGACAGTCTGAAGAAGCTGATGATAATAAAGAGTGAGGTGGTTCTAGCTGGTGCAACCTAGTACA-TTTGCTAGAGCACATACCATGCCATGTTGTA-TCCTATACATGCTTACTTGATGCACTTCCAGAACTTCAGATGGTAACTGTTTATGAAGCAGAGCTTGTAATCATGATGAGGTACATAATTTATCTGCCTATTAGGGAACGCTGTAAATTGCCATACTCTGTTTGCCGTTGATTTATTTATTGCCAAGGCACAGAGATCATCAATGTACTGTAGAATAGCCTGAACTATTGATCATGCAAAAAAAATCCATGTCTCTTCACATCTATTTTCGGTAATCATGTCGGTGGCATCAGCAAATGAATATCCTTAAAAAAAAA] [+] EMBL AU161212 [CCACCCACCCTTCTTCCTTCTCCAGCTCTCGCCTCTCGCCTCGTCCTT GTTCGTCATCGCGC TCGCTCGATTTCTCCTCCTCCTCTCTCTCGATCCCCTCTACTGCNAGANATTCCCTTGCTTGAATTCTCCTCCTCCTCCTCCTCTCCCTCCGGTGAGCGGTGGCGGCGGCGGCGAATCCGAGCTCCTGGTGGTGTCGTGGGGGGCGGGGTGATTCCGTGATGGTCGCCCGCCGCGCTCTG GGNGA ACACGGACATGCAGCGCAACCTCTCCTCCATCTCCTCCTNCGCCGCGTCGNCTTCGCCGCTCTCAACGGCCGACGGGTTCCTCTGCGTTAAGGACGGGGTGGACGAGATGATCAAGTACGTGGGCAAAGAAG CCCTNCGTC GGGGTNTAATTTCGTCCAGCAGCAAGGGCAAGGGTNCATG CCCTTCTTCTTGACGTna ] [+] EMBL AK060448 [ CCTTCTTCCTTCTCCAGCTCTCGCCTCTCGCCTCGTCCTT GTTCGTCATCGCGC TCGCTCGATTTCTCCTCCTCCTCTCTCTCGATCCCCTCTACTGCGAGAGATTCCCTTGCTTGAATTCTCCTCCTCCTCCTCCTCTCCCTCCGGTGAGCGGTGGCGGCGGCGGCGAATCCGAGCTCCTGGTGGTGTCGTGGGGGGCGGGGTGATTCCGTGATGGTCGCCCGCCGCGCTCTGCGGCGG ACACGGACATGCAGCGCAACCTCTCCTCCATCTCCTCCTCCGCCGCGTCGCCTTCGCCGCTCTCACCGGCCGACGGCTTCCTCTGCGTGAAGGACGGGGTGGACGAGATGATCAAGTACGTGGCCAACG AG CCCTCCGTC GGGCTCT ACTTCGTCCAGCAGCACGCGCAGGCGTCCATGCCCCTCCTCCTCGACGTCAAGGGAAAGGTTGCAGAAAAGATTCATGAGGTAACATTGCATACTGAAGATATAGAGGACTCTATCTGTGCAGTGAGGTCCATGGCAGAGTTTGGACTTCCAATTGCTGATGATATGATCAAGGACATAAATAAATCTCTCAAGATAATGTCAAAGACCCAACCAAAGAGGGGGTTAATCCAGAACCCCACTTGGGGGTTCCAATCAGGGAAAAGCTCAGGAACATGGGAAGAAGATTTGGGCACAACCGACGGAGGAAGCAGCCGTAATTATTTCTCTTCCATGTTCAACACTGCGAAGCAGAAGGCATCCACTCTCAGATGGCCACAGCCTGATTTCGGAACAAAAGATGACACCACTGAGGAGTCAGAGTCATCTGCAGCTCCTGAATCATCACAAGCTGGTGGACATGGTGCATCGACACCCTCAGATACAGAGAAGGATGATCTTCCTGTTTCAAGCCAGCTTTTAGATAACAATACAGCTACTATGAAGGAGAGCTCTTCGACTGATATCTCCAAATCGGTGGAGAATTATAACAAGTTCAAGGAAGAACAAGAACTCAAACTACAAGAATGGCTTAGACAGTCTGAAGAAGCTGATGATAATAAAGAGTGAGGTGGTTCTAGCTGGTGCAACCTAGTACA TTTGCTAGAGCACATACCATGCCATGTTGTA TCCTATACATGCTTACTTGATGCACTTCCAGAACTTCAGATGGTAACTGTTTATGAAGCAGAGCTTGTAATCATGATGAGGTACATAATTTATCTGCCTATTAGGGAACGCTGTAAATTGCCATACTCTGTTTGCCGTTGATTTATTTATTGCCAAGGCACAGAGATCATCAATGTACTGTAGAATAGCCTGAACTATTGATCATGC ] [+] EMBL AK099014 [ TCCTTCTCCAGCTCTCGCCTCTCGCCTCGTCCTT GTTCGTCATCGCGC TCGCTCGATTTCTCCTCCTCCTCTCTCTCGATCCCCTCTACTGCGAGAGATTCCCTTGCTTGAATTCTCCTCCTCCTCCTCCTCTCCCTCCGGTGAGCGGTGGCGGCGGCGGCGAATCCGAGCTCCTGGTGGTGTCGTGGGGGGCGGGGTGATTCCGTGATGGTCGCCCGCCGCGCTCTGCGGCGG ACACGGACATGCAGCGCAACCTCTCCTCCATCTCCTCCTCCGCCGCGTCGCCTTCGCCGCTCTCACCGGCCGACGGCTTCCTCTGCGTGAAGGACGGGGTGGACGAGATGATCAAGTACGTGGCCAACG AG CCCTCCGTC GGGCTCT ACTTCGTCCAGCAGCACGCGCAGGCGTCCATGCCCCTCCTCCTCGACGTCAAGGGAAAGGTTGCAGAAAAGATTCATGAGGTAACATTGCATACTGAAGATATAGAGGACTCTATCTGTGCAGTGAGGTCCATGGCAGAGTTTGGACTTCCAATTGCTGATGATATGATCAAGGACATAAATAAATCTCTCAAGATAATGTCAAAGACCCAACCAAAGAGGGGGTTAATCCAGAACCCCACTTGGGGGTTCCAATCAGGGAAAAGCTCAGGAACATGGGAAGAAGATTTGGGCACAACCGACGGAGGAAGCAGCCGTAATTATTTCTCTTCCATGTTCAACACTGCGAAGCAGAAGGCATCCACTCTCAGATGGCCACAGCCTGATTTCGGAACAAAAGATGACACCACTGAGGAGTCAGAGTCATCTGCAGCTCCTGAATCATCACAAGCTGGTGGACATGGTGCATCGACACCCTCAGATACAGAGAAGGATGATCTTCCTGTTTCAAGCCAGCTTTTAGATAACAATACAGCTACTATGAAGGAGAGCTCTTCGACTGATATCTCCAAATCGGTGGAGAATTATAACAAGTTCAAGGAAGAACAAGAACTCAAACTACAAGAATGGCTTAGACAGTCTGAAGAAGCTGATGATAATAAAGAGTGAGGTGGTTCTAGCTGGTGCAACCTAGTACA TTTGCTAGAGCACATACCATGCCATGTTGTA TCCTATACATGCTTACTTGATGCACTTCCAGAACTTCAGATGGTAACTGTTTATGAAGCAGAGCTTGTAATCATGATGAGGTACATAATTTATCTGCCTATTAGGGAACGCTGTAAATTGCCATACTCTGTTTGCCGTTGATTTATTTATTGCCAAGGCACAGAGATCATCAATGTACTGTAGAAT ] [+] EMBL CB652146 [ CGCCTC CCCTTAGGGCGTCATCGCGC TCGCTCGATTTCTCCTCCTCCTCTCTCTCGATCCCCTCTACTGCGAGAGATTCCCTTGCTTGAATTCTCCTCCTCCTCCTCCTCTCCCTCCGGTGAGCGGTGGCGGCGGCGGCGAATCCGAGCTCCTGGTGGTGTCGTGGGGGGCGGGGTGATTCCGTGATGGTCGCCCGCCGCGCTCTGCGGCGG ACACGGACATGCAGCGCAACCTCTCCTCCATCTCCTCCTCCGCCGCGTCGCCTTCGCCGCTCTCACCGGCCGACGGCTTCCTCTGCGTGAAGGACGGGGTGGACGAGATGATCAAGTACGTGGCCAACG AG CCCTCCGTC GGGCTCT ACTTCGTCCAGCAGCACGCGCAGGCGTCCATGCCCCTCCTCCTCGACGTCAAGGGAAAGGTTGCAGAAAAGATTCATGAGGTAACATTGCATACTGAAGATATAGAGGACTCTATCTGTGCAGTGAGGTCCATGGCAGAGTTTGGACTTCCAATTGCTGATGATATGATCAAGGACATAAATAAATCTCTCAAGATAATGTCAAAGACCCAACCAAAGAGGGGGTTAATCCAGAACCCCACTTGGGGGTTCCAATCAGGGAAAAGCTCAGGAACATGGGAAGAAGATTTGGGCACAACCGACGGAGGAAGCAGCCGTAATTATTTCTCTTCCATGTTCAACACTGCGAAGCAGAAGGCATCCACTCTCAGATGGCCACAGCCTGATTTCGGAACAAAAGATGACACCACTGAAGAGTCAGAGTCATCTGCAGCT ] [+] EMBL C98777 [ ggatGCGCNTCGCTCGATTTCTCCTCCTCCTCTCTCTCGATCCCCTCTACTGCGAGAGATTCCCTTGCTTGAATTCTCCTCCTCCTCCTCCTCTCCCTCCGGTGAGCGGTGGCGGCGGCGGCGAATCCGAGCTCCTGGTGGTGTCGTGGGGGGCGGGGTGATTCCGTGATGGTCGCCCGCCGCGCTCTGCGGCGGTACACGGACATGCAGCGCAACCTCTCCTCCATCTCCTCCTCCGCCGCGTCGCCTTCGCCGCTCTCACCGGCCGACGGCTTCCTCTGCGTGAAGGACGGGGTGGACGAGATGATCAAGTACGTGGCCAACG AGCCCCTCCGTCGGGGCTCT ACTTCGTCCAGCAGCACGCGntaggn ] [+] EMBL AU225489 [ gccgctGTTCAAGGAAGAACAAGAACTCAAACTACAAGAATGGCTTAGACAGTCTGAAGAAGCTGATGATAATAAAGAGTGAGGTGGTTCTAGCTGGTGCAACCTAGTACATTTTGCTAGAGCACATACCATGCCATGTTGTATTCCTATACATGCTTACTTGATGCACTTCCAGAACTTCAGATGGTAACTGTTTATGAAGCAGAGCTTGTAATCATGATGAGGTACATAATTTATCTGCCTATTAGGGAACGCTGTAAATTGCCATACTCTGTTTGCCGTTGATTTATTTATTGCCAAGGCACAGAGATCATCAATGTACTGTAGAATAGCCTGAAgcgg ] [+] EMBL C97515 [ cnTAGTACA TTTGCTAGAGCACANACCATGCCATGTTGTA TCCTATACATGCTTACTTGATGCACTTCCAGATCTTCAGATGGTAACTGTTTATGAAGCNGAGCTTGTAATCATGATGAGGTACATANTTTATCTGCCTATTAGGGAACGCTGTAAATTGCCATACTCTGTTTGCCGTTGATTTATTTATTGCCAAGGCACAGAGACCANCAANGTACTGTAGAATAGCCTGAACTATTGATCATGCAAAAAAAA ] [+] EMBL C98778 [ GATGAGGTACATAATTTATCTGCCTATTAGGGAACGCTGTAAATTGCCATACTCTGTTTGCCGTTGATTTATTTATTGCCAAGNCACAGNGATCATCAATGTACTNTAGAATAGCCTGAACTATTGATCNTGCATTTTTTTTCCATGTCTCTTCACATCTATTTTCGGTAATCATGTCGGTGGCATCAGCAAATGAATATCCTTAAAAAAAAA] clustalw multiple alignements is not computed in this case |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||