These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11030#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 982 fasta sequence [GTTCGAGCGGTGAGGCACAGTCTTGTGACAGGAGAGAGAAGAGAGGAGTTGGTTAGTGCTACGCTGCGACGGATGGACCGCGCGACGGAGGAGGAGACGGCGGCGACGGGGCGGCGGATACTGGTGGCCGTGGACGAGGGCGACGAGAGCGTCCACGCGCTCAAGTGGTGCCTCGCCAGCTTCGCCAAGCGCGGCGGCGGCGGGGGCGCGGCGCCGCCGGACACCATCATCCTGCTCTACGTCCGGCCGCCGCCGCCCACCTACTCCGTGCTCGACGCCTCCGGCTACGTGTTCTCCGACGAGGTGGCCGCCGCCATTGACGGGTACA-GCAAGGAGGTGGCGGAGGCGGTGGTGGAGAAGG-CGCAGAAGCTCTGCACGCTCTACGGCAAGGAGGTCGGTGGC-GACGGTGAGGCTGGCCATGAGATGAAGGTGGAGGTGAAGGTGGCGGTCGGCGACGCCAGGAACGTCATCTGCCAGATGGCGGACAAGCTCGGCGCCGACGTG-CTGGTGATGGGGAGCCATGGCTATGGCCTGTTCAAGAGGGCTCTGCTTGGAAGTGTCAGTGATTACT-GCGTCAGGAACGCCAACTGTCCAGTTCTCATCGTCA-AGTCGTAGCTGCCACTCACTCCAGTGCTTGTAACTGTGCA-GCAGCATGTGTGCTCTGTCCGGC---TTTTTTTTTTGT-T-TTTGCCTTGTG-TTCTGCT-TTGTA-TGTCTACTTTAGTTCGCTTCGCATGTAATCTGCCGGAAGAGGACGTGCTGAGTGATTACTCAGAACTCTGAAGTTATCCAGCAACCTGTATATAGAAGAACTACTTTCTGTGGAGATGGCAAATTTAGTTTTTCTGTCATCGGCTTCCACTTTTAGCACTGATTTCTGAATTTGGCTGTATAATTAGCAAATACCCAGGGTTTGCTTTGATCTATTCGCGCTAACCATTGCGCAGAAATTCAGAACTCCTTTATAAACAAATCTCTAAGAGAGAGA] [+] EMBL AK071397 [GTTCGAGCGGTGAGGCACAGTCTTGTGACAGGAGAGAGAAGAGAGGAGTTGGTTAGTGCTACGCTGCGACGGATGGACCGCGCGACGGAGGAGGAGACGGCGGCGACGGGGCGGCGGATACTGGTGGCCGTGGACGAGGGCGACGAGAGCGTCCACGCGCTCAAGTGGTGCCTCGCCAGCTTCGCCAAGCGCGGCGGCGGCGGGGGCGCGGCGCCGCCGGACACCATCATCCTGCTCTACGTCCGGCCGCCGCCGCCCACCTACTCCGTGCTCGACGCCTCCGGCTACGTGTTCTCCGACGAGGTGGCCGCCGCCATTGACGGGTACA GCAAGGAGGTGGCGGAGGCGGTGGTGGAGAAGG CGCAGAAGCTCTGCACGCTCTACGGCAAGGAGGTCGGTGGC GACGGTGAGGCTGGCCATGAGATGAAGGTGGAGGTGAAGGTGGCGGTCGGCGACGCCAGGAACGTCATCTGCCAGATGGCGGACAAGCTCGGCGCCGACGTG CTGGTGATGGAGAGCCATGGCTATGGCCTGTTCAAGAGGGCTCTGCTTGGAAGTGTCAGTGATTACT GCGTCAGGAACGCCAACTGTCCAGTTCTCATCGTCA AGTCGTAGCTGCCACTCACTCCAGTGCTTGTAACTGTGCA GCAACATGTGTGCTCTGTCCGGC TTTTTTTTTTGT T TTTGCCTTGTG TTCTGCT TTGTA TGTCTACTTTAGTTCGCTTCGCATGTAATCTGCCGGAAGAGGACGTGCTGAGTGATTACTCAGAACTCTGAAGTTATCCAGCAACCTGTATATAGAAGAACTACTTTCTGTGGAGATGGCAAATTTAGTTTTTCTGTCATCGGCTTCCACTTTTAGCACTGATTTCTGAATTTGGCTGTATAATTAGCAAATACCCAGGGTTTGCTTTGATCTATTCGCGCTAACCATTGCGCAGAAATTCAGAACTCCTTTATAAACAAATCTCTAAGAGAGAGA] [+] EMBL CF339333 [GTTCGAGCGGTGAGGCACAGTCTTGTGACAGGAGAGAGAAGAGAGGAGTTGGTTAGTGCTACGCTGCGACGGATGGACCGCGCGACGGAGGAGGAGACGGCGG ] [+] EMBL C74739 [ GCGACGAGAGCGTCCACGCGCTCAAGTGGTGCCTCGCCAGCTTCGCCAAGCGCGGCGGCGGCGGGGGCGCGGCGCCGCGGAACACCATCATCCTGCTCTACGTCCGGCCGCCGCCGCCCACCTACTCCGTGCTCGACGCCTCCGGCTACGTGTTCTCCGACGAGGTGGCCGCCGCCATTGACGGGTACA GCAAGGAGGTGGCGGAGGCGGTGGTGGAGAAGG CGCAGAAGCTCTGCACGCTCTACGGCAAGGAGGTCGGTGGC GACGGTGAGGCTGGCCATGAGATGAAGGTGGAGGTGAAAGTGGCGGTCGGCGACGCCAGGAACGTCATCTGCCAGATGGCGGACAAGCTCGGCGCCGACGTG NTGGTGATTGGGAG CATTGCTATtg ] [+] EMBL BI801104 [ GGGTACACACCAGGA GT GCGGAGCCGGTGTTGGAGAAGGCCGCAGAAGCTCTGCACGCTCTAC GCAAGGAGTTCGGTGCCAGACGGTGAGGCTGGCCATGAGATGAAGGTGGAGTTGAA GTGTCGCTCGGCGACGCCAGGAGCGTCATCTGCCAGATGGCGGACAAGCTCGGCACCGACGTGTCTGGTGATGGGGACCCATGGCTATGGCCTGTTCAAGAGGGCTCTGCTTGGAAGTGTCAGTGATTACTCGCGTCAGGAACGCCAACTGTCCAGTTCTCATCGTCACAGTCGTAGCTGCCACTCACTCCA TGCTTGTAACTGTGCACGCAGCATGTGTGCTCTGTCCGGC CTTTTTTTTTGTCTGTTTGCCTTGTGCTTCTGCTATTGTACAGTCTACTTTAGTTCGCTTCGCATGTAATCTGCCGGAAGAGGACGTGCTGAGTGATTACTCAGAACTCTGAAGTTATCCAGCAACCTGTATATAGAAGAACTACTTTCTGTGGAGATGGCCAAaaaaaaaa ] [-] EMBL CB964692 [ TGGAGAAGG CGCAGAAGCTCTGCACGCTCTACGGCAAGGAGGTCGGTGGC GACGGTGAGGCTGGCCATGAGATGAAGGTGGAGGTGAAGGTGGCGGTCGGCGACGCCAGGAGCGTCATCTGCCAGATGGCGGACAAGCTCGGCGCCGACGTG CTGGTGATGGGGAGCCATGGCTATGGCCTGTTCAAGAGGGCTCTGCTTGGAAGTGTCAGTGATTACT GCGTCAGGAACGCCAACTGTCCAGTTCTCATCGTCA AGTCGTAGCTGCCACTCACTCCAATGCTTGTAACTGTGCA GCAGCATGTGTGCTCTGTCCGGCTTTTTTTTTTTTTGT T TTTGCCTTGTG TTCTGCT TTGTA TGTCTACTTTAGTTCGCTTCGCATGTAATCTGCCGGAAGAGGACGTGCTGAGTGATTACTCAGAACTCTGAAGTTATCCAGCAACCTGTATATAGAAGAACTACTTTCTGTGGAGATGGCAAATTTAGT ] [+] EMBL AU172389 [ TCTGCTTGGAAGTGTCAGTGATTACT GCGTCAGGAACGCCAACTGTCCAGTTCTCATCGTCA AGTCGTAGCTGCCACTCACTCCAGTGCTTGTAACTGTGCA GCAGCATGTGTGCTCTGTCCGGC TTTTTTTTTTGT T TTTGCCTTGTG TTCTGCT TTGTA TGTCTACTTTAGTTCGCTTCGCATGTAATCTGCCGGAAGAGGACGTGCTGAGTGATTACTCAGAACTCTGAAGTTATCCAGCAACCTGTATATAGAAGAACTACTTTCTGTGGAGATGGCAAATTTAGTTTTTCTGTCATCGGCTTCCACTTTTAGCACTGATTTNTGAATTTGGCTGTATAATTAGCAAATACCCAGGGTTTGCTTTGATCTATTCGCGCTAACCATTGCGCAGAAATTCAGAACTCCTTTATAAAAAAAaaaa ] consensusID : consensus_11030#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 312 fasta sequence [GTGCTTGCAGGAGGTCGGTGGCGACGGTGAGGCTGGCCATGAGATGAAGGTGGAGGTGAAGGTGGCGGTCGGCGACGCAGGAACGTCATCTGCCAGATGGCGGACAAGCTCGGCGCCGACGTGCTGGTGATGGGGAGCCATGGCTATGGCCTGTTCAAGAGGTCACTGAAACGATCTCGTTTTCAATCTCAGAAGCTGTNAGAGCGCANTTAATCTGCTTTGCATATCATCTGCTTCAATCAGCTCGCGCTCTCGGTGACGATGATGTTTAGCTTAATTACGCTATATATGCTCGTTGATTTTGCAGGGCTC] [+] EMBL C29114 [GTGCTTGCAGGAGGTCGGTGGCGACGGTGAGGCTGGCCATGAGATGAAGGTGGAGGTGAAGGTGGCGGTCGGCGACGCAGGAACGTCATCTGCCAGATGGCGGACAAGCTCGGCGCCGACGTGCTGGTGATGGGGAGCCATGGCTATGGCCTGTTCAAGAGGTCACTGAAACGATCTCGTTTTCAATCTCAGAAGCTGTNAGAGCGCANTTAATCTGCTTTGCATATCATCTGCTTCAATCAGCTCGCGCTCTCGGTGACGATGATGTTTAGCTTAATTACGCTATATATGCTCGTTGATTTTGCAGGGCTC] consensusID : consensus_11030#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 255 fasta sequence [AAAGGACGTGTTGAGTGATTACTCAGAACTTTGAAGTTATCCAGCAACCTGTATATAAAAGAACTACTTTTTGTGGAGATGGCAAATTTAGTTTTTTTGTCATCGGGTTCCCCTTTTAGCACTGATTTTTGAATTTGGCGGTATAATTAGCAAAAACCCAGGGTTTGCTTTGATTTATTCGCGGTAACCATTGGGCAGAAATTCAGAACTCCTTTATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [-] EMBL CF316818 [AAAGGACGTGTTGAGTGATTACTCAGAACTTTGAAGTTATCCAGCAACCTGTATATAAAAGAACTACTTTTTGTGGAGATGGCAAATTTAGTTTTTTTGTCATCGGGTTCCCCTTTTAGCACTGATTTTTGAATTTGGCGGTATAATTAGCAAAAACCCAGGGTTTGCTTTGATTTATTCGCGGTAACCATTGGGCAGAAATTCAGAACTCCTTTATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11030#0 GTTCGAGCGGTGAGGCACAGTCTTGTGACAGGAGAGAGAAGAGAGGAGTTGGTTAGTGCT 60 consensus_11030#2 ------------------------------------------------------------ consensus_11030#1 ------------------------------------------------------------ consensus_11030#0 ACGCTGCGACGGATGGACCGCGCGACGGAGGAGGAGACGGCGGCGACGGGGCGGCGGATA 120 consensus_11030#2 ------------------------------------------------------------ consensus_11030#1 ------------------------------------------------------------ consensus_11030#0 CTGGTGGCCGTGGACGAGGGCGACGAGAGCGTCCACGCGCTCAAGTGGTGCCTCGCCAGC 180 consensus_11030#2 ------------------------------------------------------------ consensus_11030#1 ------------------------------------------------------------ consensus_11030#0 TTCGCCAAGCGCGGCGGCGGCGGGGGCGCGGCGCCGCCGGACACCATCATCCTGCTCTAC 240 consensus_11030#2 ------------------------------------------------------------ consensus_11030#1 ------------------------------------------------------------ consensus_11030#0 GTCCGGCCGCCGCCGCCCACCTACTCCGTGCTCGACGCCTCCGGCTACGTGTTCTCCGAC 300 consensus_11030#2 ------------------------------------------------------------ consensus_11030#1 ------------------------------------------------------------ consensus_11030#0 GAGGTGGCCGCCGCCATTGACGGGTACAGCAAGGAGGTGGCGGAGGCGGTGGTGGAGAAG 360 consensus_11030#2 ------------------------------------------------------------ consensus_11030#1 ------------------------------------------------------------ consensus_11030#0 GCGCAGAAGCTCTGCACGCTCTACGGCAAGGAGGTCGGTGGCGACGGTGAGGCTGGCCAT 420 consensus_11030#2 ------------------------------------------------------------ consensus_11030#1 ------------------------------------------------------------ consensus_11030#0 GAGATGAAGGTGGAGGTGAAGGTGGCGGTCGGCGACGCCAGGAACGTCATCTGCCAGATG 480 consensus_11030#2 ------------------------------------------------------------ consensus_11030#1 ------------------------------------------------------------ consensus_11030#0 GCGGACAAGCTCGGCGCCGACGTGCTGGTGATGGGGAGCCATGGCTATGGCCTGTTCAAG 540 consensus_11030#2 ------------------------------------------------------------ consensus_11030#1 ------------------------------------------------------------ consensus_11030#0 AGGGCTCTGCTTGGAAGTGTCAGTGATTACTGCGTCAGGAACGCCAACTGTCCAGTTCTC 600 consensus_11030#2 ------------------------------------------------------------ consensus_11030#1 ------------------------------------------------------------ consensus_11030#0 ATCGTCAAGTCGTAGCTGCCACTCACTCCAGTGCTTGTAACTGTGCAGCAGCATGTGTGC 660 consensus_11030#2 ------------------------------------------------------------ consensus_11030#1 ------------------------------------------------------------ consensus_11030#0 TCTGTCCGGCTTTTTTTTTTGTTTTTGCCTTGTGTTCTGCTTTGTATGTCTACTTTAGTT 720 consensus_11030#2 ------------------------------------------------------------ consensus_11030#1 --------------------------------------GTGCTTGCAGGAGGTCGGTGGC 22 consensus_11030#0 CGCTTCGCATGTAATCTGCCGGAAGAGGACGTGCTGA--GTGATTACTCAGAACTCTGAA 778 consensus_11030#2 -----------------------AAAGGACGTGTTGA--GTGATTACTCAGAACTTTGAA 35 consensus_11030#1 GACGGTGAGGCTGGCCATGAGATGAAGGTGGAGGTGAAGGTGGCGGTCGGCGACGCAGGA 82 *** * * *** *** ** * * consensus_11030#0 --GTTATCCAGCAACCTGTATATAGAAGAACTACT--TTCTGTGGAGATGGCAAATT-TA 833 consensus_11030#2 --GTTATCCAGCAACCTGTATATAAAAGAACTACT--TTTTGTGGAGATGGCAAATT-TA 90 consensus_11030#1 ACGTCATCTGCCAGATGGCGGACAAGCTCGGCGCCGACGTGCTGGTGATGGGGAGCCATG 142 ** *** ** * * * * *** ***** * * consensus_11030#0 GTTTT--TCTGTCATCGGCTTCCAC-------TTTTAGCACTGATTTCTGAATTTGGCTG 884 consensus_11030#2 GTTTT--TTTGTCATCGGGTTCCCC-------TTTTAGCACTGATTTTTGAATTTGGCGG 141 consensus_11030#1 GCTATGGCCTGTTCAAGAGGTCACTGAAACGATCTCGTTTTCAATCTCAGAAGCTGTNAG 202 * * * *** * ** * * ** * *** ** * consensus_11030#0 --TATAATTAGCAAA---TACCCAGGGTTTGCTTTGATCTATTCGCGCTAACCATTGCGC 939 consensus_11030#2 --TATAATTAGCAAA---AACCCAGGGTTTGCTTTGATTTATTCGCGGTAACCATTGGGC 196 consensus_11030#1 AGCGCANTTAATCTGCTTTGCATATCATCTGCTTCAATCAGCTCGCGCTCTCGGTGACGA 262 * *** * * * ***** ** ***** * * * * consensus_11030#0 AGAAATTCAG---AACTCCTTTATAAACAAATCTCTAAGAGAGAGA-------------- 982 consensus_11030#2 AGAAATTCAG---AACTCCTTTATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 253 consensus_11030#1 TGATGTTTAGCTTAATTACGCTATATATGCTCGTTGATTTTGCAGGGCTC---------- 312 ** ** ** ** * * **** * * * consensus_11030#0 -- consensus_11030#2 AA 255 consensus_11030#1 -- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||