|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11074#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1103 fasta sequence
[AAAATCCAATAAACTAAACTCCACCCCCCCCCCCAAAAAAACGCGGCTTCCCCCACCGCCATCTCCTCCGCTCCCTCCCCGGCGACGAGCAAGCACACCGCCGGCGCCGCGGCGGAGATGAACCCCTTCGCGAAGAAGCCCACGCCGCGAGAGGCGATCCGGAGCAGCAAACGTGAGCTGACGAATGCTACCAGAGGTATTGAGAGAGATATTGGAACGTTGCAGCTAGAGGAAAAGAGGCTAGTTGCTGAAATCAAAAGGACTGCAAAAACTGGCAATGAGGCAGCAACCAGAATTCTGGCCCGCCAGCTGATCAGGCTAAGACAGCAAATTTCTAATTTACAAGGTAGCAGAGCTCAGATTAGGGGCATTGCAACACATACACAGGCAATGCATGCCAACACTTCAGTGGCTGCTGGCATGCAAAGTGCAAGCAAAGCAATGGGAGCTTTGAACAAGCAAATGGATCCAGCCAAACAGATGAAGGTGATGCAAGAATTCCAAAAACAGTCAGCACAAATGGATATGACGAATGAGATGATGTCTGACTCCATTGACAATATCTTAGACGATGATCAAGCTGAGGAAGAAACTGAAGACCTTGCAAATCAGGTCCTGGATGAGATTGGTGTTGATATTGCCTCACAGTTATCCTCAGCTCCTAAAGGAAGGATTACTGGAAAGAAGGTTCAAGCTGATGAAAGTTCAGAATTGGACGAACTCGAGAAGAGGCTGGCTGCTCTGAAAAATCCATAGAAGAGGGAACTTCTCTGTAACCCAACATTTTACACAAAGACCTGCTCTGTACCTACATTTCAAATTCGTGATACGAAACAAAATAGTACATTTGCACCTGTAAATATCGGATGGTTGATACTTCAACTATGTGAAGATGGATGTGTATCAACCTGACAAGCCCGAAAATTCAGTGAGTAAAAAAAAAACGGCTTCTCTATAAAAAAGTGGCACTGTTAGTGTTAGCTCAGTTCTGCATGGAGAGCTTCATTTGTCGGCTTAGAGAGTAGGACATACGTGCTTGTGTGGTTGTAATTTTGTTTTTGGTGGACGTCTGATATATCAGCTCGTGTTTTTGATTCAGTGCA]
[+] EMBL AK072826 [AAAATCCAATAAACTAAACTCCACCCCCCCCCCCCCCCCAACGCGGCTTCCCCCACCGCCATCTCCTCCGCTCCCTCCCCGGCGACGAGCAAGCACACCGCCGGCGCCGCGGCGGAGATGAACCCCTTCGCGAAGAAGCCCACGCCGCGAGAGGCGATCCGGAGCAGCAAACGTGAGCTGACGAATGCTACCAGAGGTATTGAGAGAGATATTGGAACGTTGCAGCTAGAGGAAATGAGGCTAGTTGCTGAAATCAAAAGGACTGCAAAAACTGGCAATGAGGCAGCAACCAGAATTCTGGCCCGCCAGCTGGTCAGGCTAAGACAGCAAATTTCTAATTTACAAGGTAGCAGAGCTCAGATTAGGGGCATTGCAACACATACACAGGCAATGCATGCCAACACTTCAGTGGCTGCTGGCATGCAAAGTGCAAGCAAAGCAATGGGAGCTTTGAACAAGCAAATGGATCCAGCCAAACAGATGAAGGTGATGCAAGAATTCCAAAAACAGTCAGCACAAATGGATATGACGAATGAGATGATGTCTGACTCCATTGACAATATCTTAGACGATGATCAAGCTGAGGAAGAAACTGAAGACCTTGCAAATCAGGTCCTGGATGAGATTGGTGTTGATATTGCCTCACAGTTATCCTCAGCTCCTAAAGGAAGGATTACTGGAAAGAAGGTTCAAGCTGATGAAAGTTCAGAATTGGACGAACTCGAGAAGAGGCTGGCTGCTCTGAAAAATCCATAGAAGAGGGAACTTCTCTGTAACCCAACATTTTACACAAAGACCTGCTCTGTACCTACATTTCAAATTCGTGATACGAAACAAAATAGTACATTTGCACCTGTAAATATCGGATGGTTGATACTTCAACTATGTGAAGATGGATGTGTATCAACC ]
[+] EMBL AK104071 [ AAAAAAACGCGGCTTCCCCCACCGCCATCTCCTCCGCTCCCTCCCCGGCGACGAGCAAGCACACCGCCGGCGCCGCGGCGGAGATGAACCCCTTCGCGAAGAAGCCCACGCCGCGAGAGGCGATCCGGAGCAGCAAACGTGAGCTGACGAATGCTACCAGAGGTATTGAGAGAGATATTGGAACGTTGCAGCTAGAGGAAAAGAGGCTAGTTGCTGAAATCAAAAGGACTGCAAAAACTGGCAATGAGGCAGCAACCAGAATTCTGGCCCGCCAGCTGATCAGGCTAAGACAGCAAATTTCTAATTTACAAGGTAGCAGAGCTCAGATTAGGGGCATTGCAACACATACACAGGCAATGCATGCCAACACTTCAGTGGCTGCTGGCATGCAAAGTGCAAGCAAAGCAATGGGAGCTTTGAACAAGCAAATGGATCCAGCCAAACAGATGAAGGTGATGCAAGAATTCCAAAAACAGTCAGCACAAATGGATATGACGAATGAGATGATGTCTGACTCCATTGACAATATCTTAGACGATGATCAAGCTGAGGAAGAAACTGAAGACCTTGCAAATCAGGTCCTGGATGAGATTGGTGTTGATATTGCCTCACAGTTATCCTCAGCTCCTAAAGGAAGGATTACTGGAAAGAAGGTTCAAGCTGATGAAAGTTCAGAATTGGACGAACTCGAGAAGAGGCTGGCTGCTCTGAAAAATCCATAGAAGAGGGAACTTCTCTGTAACCCAACATTTTACACAAAGACCTGCTCTGTACCTACATTTCAAATTCGTGATACGAAACAAAATAGTACATTTGCACCTGTAAATATCGGATGGTTGATACTTCAACTATGTGAAGATGGATGTGTATCAACCTGACAAGCCCGAAAA ]
[+] EMBL CF335148 [ gagtagAAAAACGCGGCTTCCCCCACCGCCATCTCCTCCGCTCCCTCCCCGGCGACGAGCAAGCACACCGCCGGCGCCGCGGCGGAGATGAACCCCTTCGCGAAGAAGCCCACGCCGCGAGAGGCGATCCGGAGCAGCAAACGTGAGCTGACGAATGCTACCAGAGGTATTGAGAGAGATATTGGAACGTTGCAGCTAGAGGAAAAGAGGCTAGTTGCTGAAATCAAAAGGACTGCAAAAACTGGCAATGAGGCAGCAACCAGAATTCTGGCCCGCCAGCTGACCAGGCTAAGACAGCAAATTTCTAATTTACAAGGTAGCAGAGCTCAGATTAGGGGCATTGCAACACATACACAGGCAATGCATGCCAACACTTCAGTGGCTGCTGGCATGCAAAGTGCAAGCAAAGCAATGGGAGCTTTGAACAAGCAAATGGATCCAGCCAAACAGATGAAGGTGATGCAAGAATTCCAAAAACAGTCAGCACAAATGGATATGACGAATGAGATGATGTCTGACTCCATTGACAATATCTTAGACGATGATC ]
[+] EMBL BI807154 [ CCNAACAGATGAA GTGATGCAAGAATTTCCAAAACAGTCAGCACAAATGGATATG CGAATGAGATGATGTCTGACTCC TTGACAATATCTTAGACGATGATCAACCTGAGGAAGAAACTGAAGACCTTGCAAATCAGGTCCTGGATGAGATTGGTGTTGATATTGCCTCACAGTTATCCTCAGCTCCTAAAGGAAGGATTACTGGAAAGAAGGTTCAAGCTGATGAAAGTTCAGAATTGGACGAACTCGAGAAGAGGCTGGCTGCTCTGAAAAATCCATAGAAGAGGGAACTTCTCTGTAACCCAACATTTTACACCAAGACCTGCTCTGTACCTACANTTCAAATTCGTGATACGAAAC AAATAGTACATTTGCACCTGTAAATATCGGATGGTTGATACTTCAACTATGTGAAGATGGATGTGTATCAACCTGACAAGCCCGAAAATTCAGTGAGTAAAAAAAAAACGGCTTCTCTAAAAAAAAaa ]
[-] EMBL CF335149 [ CACAAATGGATATGACGAATGAGATGATGTCTGACTCCATTGACAATATCTTAGACGATGATCAAGCTGAGGAAGAAACTGAAGACCTTGCAAATCAGGTCCTGGATGAGATTGGTGTTGATATTGCCTCACAGTTATCCTCAGCTCCTAAAGGAAGGATTACTGGAAAGAAGGTTCAAGCTGATGAAAGTTCAGAATTGGACGAACTCGAGAAGAGGCTGGCTGCTCTGAAAAATCCATAGAAGAGGGAACTTCTCTGTAACCCAACATTTTACACAAAGACCTGCTCTGTACCTACATTTCAAATTCGTGATACGAAACAAAATAGTACATTTGCACCTGTAAATATCGGATGGTTGATACTTCAACTATGTGAAGATGGATGTGTATCAACCTGACAAGCCCGAAAATTCAGTGAGTAAAAAAAAAACGGCTTCTCTATAAAAAA ]
[-] EMBL CA882829 [ CTGTAAATATCGGATGGTTGATACTTCAACTATGTGAAGATGGATGTGTATCAACCTGACAAGCCCGAAAATTCAGTGAGTAAAAAAAAAACGGCTTCTCTATAAACTTGTGGCACTGTTAGTGTTAGCTCAGTTCTGCATGGAGAGCTTCATTTGTCGGCTTAGAGAGTAGGACATACGTGCTTGTGTGGTTGTAATTTTGTTTTTGGTGGACGTCTGATATATCAGCTCGTGTTTTTGATTCAGTGCA]
[-] EMBL CA923269 [ CTGTAAATATCGGATGGTTGATACTTCAACTATGTGAAGATGGATGTGTATCAACCTGACAAGCCCGAAAATTCAGTGAGTAAAAAAAAAACGGCTTCTCTATAAACTTGTGGCACTGTTAGTGTTAGCTCAGTTCTGCATGGAGAGCTTCATTTGTCGGCTTAGAGAGTAGGACATACGTGCTTGTGTGGTTGTAATTTTGTTTTTGGTGGACGTCTGATATATCAGCTCGTGTTTTTGATTCAGTGCA]
consensusID : consensus_11074#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 650 fasta sequence
[CATGAGGGCTATGACCAAGGGCCCAGCCGGCGAGAGGCGATCCGGAGCAGCAAACGTGAGCTGACGAATGCTACCAGAGGTATTGAGAGAGATATTGGAACGTTGCAGCTAGAGGAAAAGAGGCTAGTTGCTGAAATCAAAAGGACTGCAAAAACTGGCAATGAGGCAGCAACCAGAATTCTGGCCCGCCAGCTGATCAGGCTAAGACAGCAAATTTCTAATTTACAAGGTAGCAGAGCTCAGATTAGGGGCATTGCAACACATACACAGGCAATGCATGCCAACACTTCAGTGGCTGCTGGCATGCAAAGTGCAAGCAAAGCAATGGGAGCTTTGAACAAGCAAATGGATCCAGCCAAACAGATGAAGGTGATGCAAGAATTCCAAAAACAGTCAGCACAAATGGATATGACGAATGAGATGATGTCTGACTCCATTGACAATATCTTACACGATGATCAAGCTGAGGAAGAAACTGAAGACCTTGCAAATCAGGTCCTGGATGAGATTGGTGTTGATATTGCCTCACAGTTATCCTCAGCTCCTAAAGGAAGGATTACTGGAAAGAAGGTTCAAGCTGATGAAAGTTCAGAATTGGACGAACTCGAGAAGAGGCTGGCTGCTCTGAAAAATCCATAGAAGAGGGAACT]
[+] EMBL CB676871 [CATGAGGGCTATGACCAAGGGCCCAGCCGGCGAGAGGCGATCCGGAGCAGCAAACGTGAGCTGACGAATGCTACCAGAGGTATTGAGAGAGATATTGGAACGTTGCAGCTAGAGGAAAAGAGGCTAGTTGCTGAAATCAAAAGGACTGCAAAAACTGGCAATGAGGCAGCAACCAGAATTCTGGCCCGCCAGCTGATCAGGCTAAGACAGCAAATTTCTAATTTACAAGGTAGCAGAGCTCAGATTAGGGGCATTGCAACACATACACAGGCAATGCATGCCAACACTTCAGTGGCTGCTGGCATGCAAAGTGCAAGCAAAGCAATGGGAGCTTTGAACAAGCAAATGGATCCAGCCAAACAGATGAAGGTGATGCAAGAATTCCAAAAACAGTCAGCACAAATGGATATGACGAATGAGATGATGTCTGACTCCATTGACAATATCTTACACGATGATCAAGCTGAGGAAGAAACTGAAGACCTTGCAAATCAGGTCCTGGATGAGATTGGTGTTGATATTGCCTCACAGTTATCCTCAGCTCCTAAAGGAAGGATTACTGGAAAGAAGGTTCAAGCTGATGAAAGTTCAGAATTGGACGAACTCGAGAAGAGGCTGGCTGCTCTGAAAAATCCATAGAAGAGGGAACT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11074#0 AAAATCCAATAAACTAAACTCCACCCCCCCCCCCAAAAAAACGCGGCTTCCCCCACCGCC 60
consensus_11074#1 ------------------------------------------------------------
consensus_11074#0 ATCTCCTCCGCTCCCTCCCCGGCGACGAGCAAGCACACCGCCGGCGCCGCGGCGGAGATG 120
consensus_11074#1 --------------------------------------------------------CATG 4
***
consensus_11074#0 AACCCCTTCGCGAAGAAGCCCACGCCGCGAGAGGCGATCCGGAGCAGCAAACGTGAGCTG 180
consensus_11074#1 AGGGCTATGACCAAGG-GCCCAGCCGGCGAGAGGCGATCCGGAGCAGCAAACGTGAGCTG 63
* * * * *** ***** * **********************************
consensus_11074#0 ACGAATGCTACCAGAGGTATTGAGAGAGATATTGGAACGTTGCAGCTAGAGGAAAAGAGG 240
consensus_11074#1 ACGAATGCTACCAGAGGTATTGAGAGAGATATTGGAACGTTGCAGCTAGAGGAAAAGAGG 123
************************************************************
consensus_11074#0 CTAGTTGCTGAAATCAAAAGGACTGCAAAAACTGGCAATGAGGCAGCAACCAGAATTCTG 300
consensus_11074#1 CTAGTTGCTGAAATCAAAAGGACTGCAAAAACTGGCAATGAGGCAGCAACCAGAATTCTG 183
************************************************************
consensus_11074#0 GCCCGCCAGCTGATCAGGCTAAGACAGCAAATTTCTAATTTACAAGGTAGCAGAGCTCAG 360
consensus_11074#1 GCCCGCCAGCTGATCAGGCTAAGACAGCAAATTTCTAATTTACAAGGTAGCAGAGCTCAG 243
************************************************************
consensus_11074#0 ATTAGGGGCATTGCAACACATACACAGGCAATGCATGCCAACACTTCAGTGGCTGCTGGC 420
consensus_11074#1 ATTAGGGGCATTGCAACACATACACAGGCAATGCATGCCAACACTTCAGTGGCTGCTGGC 303
************************************************************
consensus_11074#0 ATGCAAAGTGCAAGCAAAGCAATGGGAGCTTTGAACAAGCAAATGGATCCAGCCAAACAG 480
consensus_11074#1 ATGCAAAGTGCAAGCAAAGCAATGGGAGCTTTGAACAAGCAAATGGATCCAGCCAAACAG 363
************************************************************
consensus_11074#0 ATGAAGGTGATGCAAGAATTCCAAAAACAGTCAGCACAAATGGATATGACGAATGAGATG 540
consensus_11074#1 ATGAAGGTGATGCAAGAATTCCAAAAACAGTCAGCACAAATGGATATGACGAATGAGATG 423
************************************************************
consensus_11074#0 ATGTCTGACTCCATTGACAATATCTTAGACGATGATCAAGCTGAGGAAGAAACTGAAGAC 600
consensus_11074#1 ATGTCTGACTCCATTGACAATATCTTACACGATGATCAAGCTGAGGAAGAAACTGAAGAC 483
*************************** ********************************
consensus_11074#0 CTTGCAAATCAGGTCCTGGATGAGATTGGTGTTGATATTGCCTCACAGTTATCCTCAGCT 660
consensus_11074#1 CTTGCAAATCAGGTCCTGGATGAGATTGGTGTTGATATTGCCTCACAGTTATCCTCAGCT 543
************************************************************
consensus_11074#0 CCTAAAGGAAGGATTACTGGAAAGAAGGTTCAAGCTGATGAAAGTTCAGAATTGGACGAA 720
consensus_11074#1 CCTAAAGGAAGGATTACTGGAAAGAAGGTTCAAGCTGATGAAAGTTCAGAATTGGACGAA 603
************************************************************
consensus_11074#0 CTCGAGAAGAGGCTGGCTGCTCTGAAAAATCCATAGAAGAGGGAACTTCTCTGTAACCCA 780
consensus_11074#1 CTCGAGAAGAGGCTGGCTGCTCTGAAAAATCCATAGAAGAGGGAACT------------- 650
***********************************************
consensus_11074#0 ACATTTTACACAAAGACCTGCTCTGTACCTACATTTCAAATTCGTGATACGAAACAAAAT 840
consensus_11074#1 ------------------------------------------------------------
consensus_11074#0 AGTACATTTGCACCTGTAAATATCGGATGGTTGATACTTCAACTATGTGAAGATGGATGT 900
consensus_11074#1 ------------------------------------------------------------
consensus_11074#0 GTATCAACCTGACAAGCCCGAAAATTCAGTGAGTAAAAAAAAAACGGCTTCTCTATAAAA 960
consensus_11074#1 ------------------------------------------------------------
consensus_11074#0 AAGTGGCACTGTTAGTGTTAGCTCAGTTCTGCATGGAGAGCTTCATTTGTCGGCTTAGAG 1020
consensus_11074#1 ------------------------------------------------------------
consensus_11074#0 AGTAGGACATACGTGCTTGTGTGGTTGTAATTTTGTTTTTGGTGGACGTCTGATATATCA 1080
consensus_11074#1 ------------------------------------------------------------
consensus_11074#0 GCTCGTGTTTTTGATTCAGTGCA 1103
consensus_11074#1 -----------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||