These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11132#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 523 fasta sequence [GGAGAAAGAGAGAGGCGTTGGTCGGTGGCCGCCCGTCGCTTCTCCTCTTCCGACGCCGGCGCGGCCGAGAGAAATGGCGGTGGCTGCGAGGGCTCCGCTCGGGGTGGTGGCGGTGGTGGCCGTGCTCGTCGTCGGCATCTTCATGCCCGCCGCGGCGCAGGCCCCGGCGCCCGCGCCCGTCAGCGACGGCACATCGATCGACCTGGGGATCGCATACATCCTGATGCTGGTGGCTCTTGTGCTCACCTACCTAATCCATCCACTGGATGCTTCTTCTCCCTACAAGCTTTTCTAATCCCTTGTTC-TTC-C-TTCATCTGGCTTG-GTTAGGGTAAATTCTACTT-A-TTATTTAG-CCATGGCGACGATTGTTAAC-ATTTTAGGTGAGATGTTAGGAGGTTTGGAGTGATTTGTCTGTCCATGATGGGGGTGGTATCAATCAGATCGTTGTTTGGTGGTGCGATTGGCTGTATTGGATTCCATGATTTGGTGCCAAGTTGTGCGTGCTGGATTCGTTCATTTTCAAAAA] [+] EMBL AK069678 [GGAGAAAGAGAGAGGCGTTGGTCGGTGGCCGCCCGTCGCTTCTCCTCTTCCGACGCCGGCGCGGCCGAGAGAAATGGCGGTGGCTGCGAGGGCTCCGCTCGGGGTGGTGGCGGTGGTGGCCGTGCTCGTCGTCGGCATCTTCATGCCCGCCGCGGCGCAGGCCCCGGCGCCCGCGCCCGTCAGCGACGGCACATCGATCGACCTGGGGATCGCATACATCCTGATGCTGGTGGCTCTTGTGCTCACCTACCTAATCCATCCACTGGATGCTTCTTCTCCCTACAAGCTTTTCTAATCCCTTGTTC TTC C TTCATCTGGCTTG GTTAGGGTAAATTCTACTT A TTATTTAG CCATGGCGACGATTGTTAAC ATTTTAGGTGAGATGTTAGGAGGTTTGGAGTGATTTGTCTGTCCATGATGGGGGTGGTATCAATCAGATCGTTGTTTGGTGGTGCGATTGGCTGTATTGGATTCCATGATTTGGTGCCAAGTTGTGCGTGCT ] [+] EMBL AU183918 [ nGGCGTTGGTCGGTGGCCGCCCGTCGCTTCTCCTCTTCCGACGCCGGCGCGGCCGAGAGAAATGGCGGTGGCTGCGAGGGCTCCGCTCGGGGTGGTGGCGGTGGTGGCCGTGCTCGTCGTCGGCATCTTCATGCCCGCCGCGGCGCAGGCCCCGGCGCCCGCGCCCGTCAGCGACGGCACATCGATCGACCTGGGGATCGCATACATCCTGATGCTGGTGGCTCTTGTGCTCACCTACCTAATCCATCCACTGGATGCTTNTTCTCCCTACAAGCTTTTCTAATCCCTTGTTC TTN C TTCATCTGGCTTG GTTAGGGTAAATTCTACTT A TTATTTAN CCATGGCGACNATTGT ] [+] EMBL AU071165 [ GCGTTGGTCGGTGGCCGCCCGTCGCTTCTCCTCTTCCGACGCCGGCGCGGCCGAGAGAAATGGCGGTGGCTGCGAGGGCTCCGCTCGGGGTGGTGGCGGTGGTGGCCGTGCTCGTCGTCGGCATCTTCATGCCCGCCGCGGCGCAGGCCCCGGCGCCCGCGCCCGTCAGCGACGGCACATCGATCGACCTGGGGATCGCATACATCCTGATGCTGGTGGCTCTTGTGCTCACCTACCTAATCCATCCACTGGATGCTTCTTCTCCCTACAAGCTTTTCTAATCCCTTGTTC TTC C TTCATCTGGCTTG GTTAGGGTAAATTCTACTT A TTATTTAG CCATGGCGACGATTGTTAAC ATTTTAGGTGAGATGTTAGGAGGTTTGGAGTGATTTGTCTGTCCATGATGGGGGTGGTATCAATCAGATCGTTGTTTGGTGGTGCGATTGGCTGTATTGGAaaaaa ] [+] EMBL AU066210 [ GTTGGTCGGTGGCCGCCCGTCGCTTCTCCTCTTCCGACGCCGGCGCGGCCGAGAGAAATGGCGGTGGCTGCNAGGGCTCCGCTCGGGGTGGTGGCGGTGGTGGCCGTGCTCGTCGTCGGCATCTTCATGCCCGCCGCGGCGCAGGCCCCGGCGCCCGCGCCCGTNAGCNACGGCACATCGATCGACCTGGGGATCGCATACATCCTGATGCTGGTGGCTCTTGTGCTCACCTACCTAATCCATCCACTGGATGCTTCTTCTCCCTACAAGCTTTTCTAATCCCTTGTTC TTC C TTCATCTGGCTTG GTTAGGGTAAATTCTACTT A TTATTTAG CCATGGCGACGATTGTTAAC ATTTTAGGTGAGA ] [+] EMBL AU223275 [ CCCCGGCGCCCGCGCCCGTCAGCGACGGCACATCGATCGACCTGGGGATCGCATACATCCTGATGCTGGTGGCTCTTGTGCTCACCTACCTAATCCATCCACTGGATGCTTNTTCTCCCTACAAGCTTTTCTAATCCCTTGTTC TTC C TTCATCTGGCTTG GTTAGGGTAAATTCTACTT A TTATTTAG CCATGGCGACGATTGTTAAC ATTTTAGGTGAGATGTTAGGAGGTTTGGAGTGATTTGTCTGTCCATGATGGGGGTGGTATCAATCAGATCGTTGTTTGGTGGTGCGATTGGCTGTATTGGATTCCATGATTTGGTGCCAAGTTGTGCGTGCTGGATTCGTTCATTTTCAAAAA] [+] EMBL BI802102 [ TTTTCTAATCCCTTGTTCGTTCACATTCATCTGGCTTGCCTTAGGGTAAATTCTACTTGAGTTATTTAGCCCATGGCGACGATTGTTAACAATTTTAGGTGAGAT TTAGGA GTTTGGAGTGATTTGTCTGTCCATGATGGGGGTGGTATCAATCAGATCGTTGTTTGGTGGTGCGATT GCTGTATTGGATTCCATGATTTGGTGCCAAaaa ] consensusID : consensus_11132#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 266 fasta sequence [CATACATCCTGATNCTGGTGGCTNTTGTGCTCACCTACCTAATCCATCCNCTGGATGCTTCTTCTCCCTACAAGCTTTTCTAATCCCTTGTTCTTCCTTCATCTGGCTTGGTTNGGGTAAATTCTACTTATTATTTAGCCATNGCGACGATTNTTAACATTTTAGGTGAGATGTTNGGNGGTTTGGNGTGATTTGTCTGTCCATGATGGGNGTNGTNTCNATCNGATCGTTGTTTNNTNGTGCAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU164757 [CATACATCCTGATNCTGGTGGCTNTTGTGCTCACCTACCTAATCCATCCNCTGGATGCTTCTTCTCCCTACAAGCTTTTCTAATCCCTTGTTCTTCCTTCATCTGGCTTGGTTNGGGTAAATTCTACTTATTATTTAGCCATNGCGACGATTNTTAACATTTTAGGTGAGATGTTNGGNGGTTTGGNGTGATTTGTCTGTCCATGATGGGNGTNGTNTCNATCNGATCGTTGTTTNNTNGTGCAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_11132#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 163 fasta sequence [CTGGCTTGGTTAGGGTAAATTCTACTTATTATTTAGCCACTGGCGACGATTGTTAACCTTTTAGGTGAGATGTTAGGAGGTTTGGAGTGATTTGTCTGTCCACTGATGGGGGTGGTATCATCAGATCGTTGTTTGGTGGTGCGATTGGCTGTAAAAAAAAAAA] [+] EMBL BI805212 [CTGGCTTGGTTAGGGTAAATTCTACTTATTATTTAGCCACTGGCGACGATTGTTAACCTTTTAGGTGAGATGTTAGGAGGTTTGGAGTGATTTGTCTGTCCACTGATGGGGGTGGTATCATCAGATCGTTGTTTGGTGGTGCGATTGGCTGTAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11132#0 GGAGAAAGAGAGAGGCGTTGGTCGGTGGCCGCCCGTCGCTTCTCCTCTTCCGACGCCGGC 60 consensus_11132#2 ------------------------------------------------------------ consensus_11132#1 ------------------------------------------------------------ consensus_11132#0 GCGGCCGAGAGAAATGGCGGTGGCTGCGAGGGCTCCGCTCGGGGTGGTGGCGGTGGTGGC 120 consensus_11132#2 ------------------------------------------------------------ consensus_11132#1 ------------------------------------------------------------ consensus_11132#0 CGTGCTCGTCGTCGGCATCTTCATGCCCGCCGCGGCGCAGGCCCCGGCGCCCGCGCCCGT 180 consensus_11132#2 ------------------------------------------------------------ consensus_11132#1 ------------------------------------------------------------ consensus_11132#0 CAGCGACGGCACATCGATCGACCTGGGGATCGCATACATCCTGATGCTGGTGGCTCTTGT 240 consensus_11132#2 ------------------------------------------------------------ consensus_11132#1 --------------------------------CATACATCCTGATNCTGGTGGCTNTTGT 28 consensus_11132#0 GCTCACCTACCTAATCCATCCACTGGATGCTTCTTCTCCCTACAAGCTTTTCTAATCCCT 300 consensus_11132#2 ------------------------------------------------------------ consensus_11132#1 GCTCACCTACCTAATCCATCCNCTGGATGCTTCTTCTCCCTACAAGCTTTTCTAATCCCT 88 consensus_11132#0 TGTTCTTCCTTCATCTGGCTTGGTTAGGGTAAATTCTACTTATTATTTAGCCA-TGGCGA 359 consensus_11132#2 --------------CTGGCTTGGTTAGGGTAAATTCTACTTATTATTTAGCCACTGGCGA 46 consensus_11132#1 TGTTCTTCCTTCATCTGGCTTGGTTNGGGTAAATTCTACTTATTATTTAGCCA-TNGCGA 147 *********** *************************** * **** consensus_11132#0 CGATTGTTAACATTTTAGGTGAGATGTTAGGAGGTTTGGAGTGATTTGTCTGTCCA-TGA 418 consensus_11132#2 CGATTGTTAACCTTTTAGGTGAGATGTTAGGAGGTTTGGAGTGATTTGTCTGTCCACTGA 106 consensus_11132#1 CGATTNTTAACATTTTAGGTGAGATGTTNGGNGGTTTGGNGTGATTTGTCTGTCCA-TGA 206 ***** ***** **************** ** ******* **************** *** consensus_11132#0 TGGGGGTGGTATCAATCAGATCGTTGTTTGGTGGTGCGATTGGCTGTATTGGATTCCATG 478 consensus_11132#2 TGGGGGTGGTATCA-TCAGATCGTTGTTTGGTGGTGCGATTGGCTGTAAAAAAAAAAA-- 163 consensus_11132#1 TGGGNGTNGTNTCNATCNGATCGTTGTTTNNTNGTGCAAAAAAAAAAAAAAAAAAAAAAA 266 **** ** ** ** ** *********** * **** * * * * consensus_11132#0 ATTTGGTGCCAAGTTGTGCGTGCTGGATTCGTTCATTTTCAAAAA 523 consensus_11132#2 --------------------------------------------- consensus_11132#1 --------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||