These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11133#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 830 fasta sequence [GCTTCTTCAGCTCCCGACCTCGTCTTCAGCTCCGATCGCTCGCTGCGGCAGATCCCGCCGCCAAGAAAGACGCCGGCGGACGGAGCGGGAGCGACGACCTCGCCGGGCCGCACGCACGCCCGCACGCACCACCACCTGCTGAAATCCCTGCGTCGTCTCGCCGTGGTGCTAGCTAATACAGGAAAATTACTTCAGTTTCTACTCAGCATTCTTGTGTGATAATGGCGTCAGCAGCAATCTACAGCCTTTTCATCATTAACAAATCTGGCGGCCTTATATACTACAAGGACTATGGCTCAGCAGGTAGGACGGACACCAATGACAGTCTACGCTTGGCAAGTCTTTGGCATTCCATGCATGCTATCTCCCAGCAGCTGTCCCCTACACCTGGCTGTGAAGGCATTGACCTTCTACAAGCCCACAACTTTGATCTCCATTGCTTCCAGTCC-CTCACAGGGACAAAGTTTTTTGCTGTATGCGAAACTGGTGCTCAAAATATCGAGACTCTACT-GAAAGTCATATACGAGCTCTACACGGATTTTGTTCTGAAAAATCCATT-CTACGAGATGGAGATGCCAATTCGTT-GTGAGCTTTTTGATCTCAACCTGGCTCAGGTCATTCAGAAGGACCGCGTCACACTTCTGGGTCGATGAATCATTTAGAAAACATGAC-GCACCATGTC-TTTGTATGTGGC-TTATATGACATGTATGGTGTCAGTAGGGTACTTGGAATTCAGGCAAGTCATTACACTGCATCACAAAGTCCATATACAGTGTGCAGTC-GATTC-CTTCTAGTTCTGAAAATTAC-TTTATTC-CTGAAGTATCATTAAA] [+] EMBL CF295802 [GCTTCTTCAGCTCCCGACCTCGTCTTCAGCTCCGATCGCTCGCTGCGGCAGATCCCGCCGCCAAGAAAGACGCCGGCGGACGGAGCGGGAGCGACGACCTCGCCGGGCCGCACGCACGCCCGCACGCACCACCACCTGCTGAAATCCCTGCGTCGTCTCGCCGTGGTGCTAGCTAATACAGGAAAATTACTTCAGTTTCTACTCAGCATTCTTGTGTGATAATGGCGTCAGCAGCAATCTACAGCCTTTTCATCATTAACAAATCTGGCGGCCTTATATACTACAAGGACTATGGCTCAGCAGGTAGGACGGACACCAATGACAGTCTACGCTTGGCAAGTCTTTGGCATTCCATGCATGCTATCTCCCAGCAGCTGTCCCCTACACATGGCTGCGAAGGCATTGACCTTCTACAAGCCCATAACTTTGATCTCCATTGCTTCCAGTCC CTCACAGGGACAAAGTTTTTTGCTGTATGCGAAACTGGTGCTCAAAATATCGAGACACTACT GAAAGTCATATACGAGCTCTACACGGATTTTGTTTTGAAAAATCCATT CTACGAAATGGAGATGCCAATTCGTT GTGAGCTTTTTGATCTC ] [+] EMBL AK058258 [ GATAATGGCGTTAGCAGCAATCTACAGCCTTTTCATCATTAACAAATCTGGCGGCCTTATATACTACAAGGACTATGGCTCAGCAGGGAGGACGGACACCAATGACAGTCTACGCTTGGCAAGTCTTTGGCATTCCATGCATGCTATCTCCCAGCAGCTGTCCCCTACACCTGGCTGTGAAGGCATTGACCTTCTACAAGCCCACAACTTTGATCTCCATTGCTTCCAGTCC CTCACAGGGACAAAGTTTTTTGCTGTATGCGAAACTGGTGCTCAAAATATCGAGACTCTACT GAAAGTCATATACGAGCTCTACACGGATTTTGTTCTGAAAAATCCATT CTACGAGATGGAGATGCCAATTCGTT GTGAGCTTTTTGATCTCAACCTGGCTCAGGTCATTCAGAAGGACCGCGTCACACTTCTGGGTCGATGAATCATTTAGAAAACATGAC GCACCATGTC TTTGTATGTGGC TTATATGACATGTATGGTGTCAGTAGGGTACTTGGAATTCAGGCAAGTCATTACACTGCATCACAAAGTCCATATACAGTGTGCAGTC GATTC CTTCTAGTTCTGAAAATTAC TTTATTC CTGAAGTATCATT ] [+] EMBL BI811700 [ TGCATGCTATCTCCCA CA CTGTCCCCTACACCT GCTGTGAAGGCATTGACCTTCTACAAGCCCACAACTTTGATCTCCATTGCTTCCAGTCCACTCACAGGGACAAA TTTTTTCCTGTAT CGAAACTGGTGCTCAAAATATCGAGACTCTACTGGAAAGTCATATACGAGCTCTACACGGATTTTGTTCTG AAAATCCATTGCTACGAGATGGAGAT CCAATTCGTTGGTGAGC TTTTGATCTCAACCTGGCTCAGGTCATTCAGAAGGACCGCGTCACACTTCTGGGTCGATGAATCATTTAGAAAACATGACAGCACCATGTCATTTGTATGTGGCATTATATGACATGTATGGTGTCAGTAGGGTACTTGGAATTCAGGCAAGTCATTACACTGCATCACAAAGTCCATATACAGTGTGCAGTCAGATTCACTTCTAGTTCTGAAAATTACATTTATTCACTGAAGTAaaaaaaaa] consensusID : consensus_11133#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 728 fasta sequence [CCGAAGCGGCGGCCGCGAAGCCCGAGGTGAACCTGGTGACCGGGGATGGCGGGTACTTGCTCCAGGACGTGCCGCATGTGTGCGACTACCTCCCCGATCTACCGACATACTCAAATCCACTGCAAGATAACCCGGCATACTCGGTTGTGAAGCAATACTTTGTAAACCCAGATGACACTGTCTGCCATAAGGCCATTGTTCACAAGGATGGCCCTACATGCTACCACTTCCGTCGTGCTGGGCCTCGACAGAGGGTGTTTTTTGAATCGGATGAGGTCCATGCATGCATTGTCACATGTGGAGGACTGTGCCCTGGACTGAACACTGTCATTAGGGAAATTGTATGTGGCTTATATGACATGTATGGCGTCAGTAGGGTACTTGGAATTCAGGGTGGGTATAGAGGTTTCTATGCTTGCAACACCATTGACTTGAGTCCAAAGAGTGTAAACGACATTCCCAAAAGGGGTGGAACTGTTCTTGGGACATCACGTGGAGGCCATGACACCATGAAGATTGTTGACAGCATCCAGGATCGTGGTATAAATCAGGTTTATGTAATTGGTGGTGATGGTACTCAAAGGGGTGCAGGAGTGATTTTTGAAGAGATTAGAAGACGTGGTCTCAAGGTTGCTGTTGCTGGCATTCCAAAGACGATTGATAATGATATACCAGTAATTGACAGATCATTTGGTTTCCACACTGCAGTTGAGGAGGCCCAACGTGCA] [+] EMBL CB626511 [CCGAAGCGGCGGCCGCGAAGCCCGAGGTGAACCTGGTGACCGGGGATGGCGGGTACTTGCTCCAGGACGTGCCGCATGTGTGCGACTACCTCCCCGATCTACCGACATACTCAAATCCACTGCAAGATAACCCGGCATACTCGGTTGTGAAGCAATACTTTGTAAACCCAGATGACACTGTCTGCCATAAGGCCATTGTTCACAAGGATGGCCCTACATGCTACCACTTCCGTCGTGCTGGGCCTCGACAGAGGGTGTTTTTTGAATCGGATGAGGTCCATGCATGCATTGTCACATGTGGAGGACTGTGCCCTGGACTGAACACTGTCATTAGGGAAATTGTATGTGGCTTATATGACATGTATGGCGTCAGTAGGGTACTTGGAATTCAGGGTGGGTATAGAGGTTTCTATGCTTGCAACACCATTGACTTGAGTCCAAAGAGTGTAAACGACATTCCCAAAAGGGGTGGAACTGTTCTTGGGACATCACGTGGAGGCCATGACACCATGAAGATTGT ] [+] EMBL CB633076 [ CGGCCCTTTAACCCGAGGTGAAGCTGGTGACCGGGGATGGCGGGTACGTGCTCGAGGACGTGCCGCATGTGTGCGACTACCTCCCCGATCTACCGACATACTCAAATCCACTGCAAGATAACCCGGCATACTCGGTTGTGAAGCAATACTTTGTAAACCCAGATGACACTGTCTGCCAGAAGGCCATTGTTCACAAGGATGGCCCTAGAGGCAACCACTTCCGTCGTGCTGGGCCTCAACAGAGGGTGTTTTTTGAATCGGATGAGGTCCATGCATGCATTGTCACATGTGGAGGACTGTGCCCTGGACTGAACACTGTCATTAGGGAAATTGTATGTGGCTTATATGACATGTATGGTGTCAGTAGGGTACTTGGAATTCAGGGTGGGTATAGAGGTTTCTATGCTTGTAACACCATTGACTTGAGTCCAAAGAGTGTAAACGACATTCACAAAAGGGGTGGAACTGTTCTTGGGACATCACGTGGAGGCCATGACACCATGAAGATTGTTGACAGCATCCAGGATCGTGGTATAAATCAGGTTTATGTAATTGGTGGTGATGGTACTCAAAGGGGTGCAGGAGTGATTTTTGAAGAGATTAGAAGACGTGGTCTCAAGGTTGCTGTTGCTGGCATTCCAAAGACGATTGATAATGATATACCAGTAATTGACAGATCATTTGGTTTCCACACTGCAGTTGAGGAGGCCCAACGTGCA] consensusID : consensus_11133#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 474 fasta sequence [CTACACATGGCTGCGAAGGCATTGACCTTTTACAAGCCCATAACTTTGATCTCCATTGCTTCCAGTCCCTCACAGGGACAAAGTTTTTTGCTGTATGCGAAACTGGTGCTCAAAATATCGAGACACTACTGAAAGTCATATACGAGCTCTACACGGATTTTGTTTTGAAAAATCCATTCTACGAGATGGAGATGCCAATTCGTTGTGAGCTTTTTGATCTCAACCTGGCTCAGGTCATTCAGAAGGACCGCGTCACACTTCTGGGTCGATGAATCATTTAGAAAACATGATGCACCATGTCTTTGTAATTTTTCGGATTCCTGCACTGCCTTTGGATTTGCTCAGCCACAAACCAAAGTATTCTTTCGTATGTGTTGCTGATAATTAATGATATGAACATCATGATGTATTGCTCACTTACTCATCTGTAAATCTCTTATAAGGTGCTGGATCGTAGCATTTTGCAGAAAAAAA] [-] EMBL CF295801 [CTACACATGGCTGCGAAGGCATTGACCTTTTACAAGCCCATAACTTTGATCTCCATTGCTTCCAGTCCCTCACAGGGACAAAGTTTTTTGCTGTATGCGAAACTGGTGCTCAAAATATCGAGACACTACTGAAAGTCATATACGAGCTCTACACGGATTTTGTTTTGAAAAATCCATTCTACGAGATGGAGATGCCAATTCGTTGTGAGCTTTTTGATCTCAACCTGGCTCAGGTCATTCAGAAGGACCGCGTCACACTTCTGGGTCGATGAATCATTTAGAAAACATGATGCACCATGTCTTTGTAATTTTTCGGATTCCTGCACTGCCTTTGGATTTGCTCAGCCACAAACCAAAGTATTCTTTCGTATGTGTTGCTGATAATTAATGATATGAACATCATGATGTATTGCTCACTTACTCATCTGTAAATCTCTTATAAGGTGCTGGATCGTAGCATTTTGCAGAAAA ] [-] EMBL CF331025 [ GATGCCAATTCGTTGTGAGCTTTTTGATCTCAACCTGGCTCAGGTCATTCAGAAGGACCGCGTCACACTTCTGGGTCGATGAATCATTTAGAAAACATGATGCACCATGTCTTTGTAATTTTTCGGATTCCTGCACTGCCTTTGGATTTGCTCAGCCACAAACCAAAGTATTCTTTCGTATGTGTTGCTGATAATTAATGATATGAACGTCATGATGTATTGCTCACTTACTCATCTGTAAATCTCTTATAAGGTGCTGGATCGTAGCATTTTGCAAAAAAAAA] consensusID : consensus_11133#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 472 fasta sequence [AGCTTCTTCAGCTCCCGACCTCGTCTTCAGCTCCGATCGCTCGCCGCGGCAGATCCCGCCGCCAAGAAAGACGCCGGCGGACGGAGCGGGAGCGACGACCTCGCCGGGCCGCACGCACGCCCGCACGCACCACCACCTGCTGAAATCCTTGTGTCGTCTCGCCGTGGTGCTAGTTTCTACTCAGCATTCTTGTTTGTTAATGGCGTCAGCAGCAATCTACAGCCTTTTCATCATTAACAAATCTGGCGGCCTTATATACTACAAGGTATTGTTTACTGTACTCCTGTTTCTCTTCGTTCTTTCGGAGCTGGACTCTGAACACCTTGCACATCTCATTTGTCCAGGACTATGGCTCAGCAGGTAGGACGGACACCAATGACAGTCTACGCTTGGCAAGTCTTTGGCATTCCATGCATGCTATCTCCCAGCAGCTGTCCCCTACACATGGCTGCGAAGGCATTGACCTTCTACA] [+] EMBL CF331026 [AGCTTCTTCAGCTCCCGACCTCGTCTTCAGCTCCGATCGCTCGCCGCGGCAGATCCCGCCGCCAAGAAAGACGCCGGCGGACGGAGCGGGAGCGACGACCTCGCCGGGCCGCACGCACGCCCGCACGCACCACCACCTGCTGAAATCCTTGTGTCGTCTCGCCGTGGTGCTAGTTTCTACTCAGCATTCTTGTTTGTTAATGGCGTCAGCAGCAATCTACAGCCTTTTCATCATTAACAAATCTGGCGGCCTTATATACTACAAGGTATTGTTTACTGTACTCCTGTTTCTCTTCGTTCTTTCGGAGCTGGACTCTGAACACCTTGCACATCTCATTTGTCCAGGACTATGGCTCAGCAGGTAGGACGGACACCAATGACAGTCTACGCTTGGCAAGTCTTTGGCATTCCATGCATGCTATCTCCCAGCAGCTGTCCCCTACACATGGCTGCGAAGGCATTGACCTTCTACA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11133#0 ------------------------------------------------------GCTTCT 6 consensus_11133#3 -----------------------------------------------------AGCTTCT 7 consensus_11133#2 -----------------------------CTACACATGGCTGCGAAGGCATTGACCTTTT 31 consensus_11133#1 CCGAAGCGGCGGCCGCGAAGCCCGAGGTGAACCTGGTGACCGGGGATGGCGGGTACTTGC 60 *** consensus_11133#0 TCA-GCTCCCGACCTCG-TCTTCAGC---TCCGATCGCTCGCTGCGGCAGATCCCGCCGC 61 consensus_11133#3 TCA-GCTCCCGACCTCG-TCTTCAGC---TCCGATCGCTCGCCGCGGCAGATCCCGCCGC 62 consensus_11133#2 ACAAGCCCATAACTTTGATCTCCATTGCTTCCAGTCCCTCACAGGGACAAAGTTTTTTGC 91 consensus_11133#1 TCCAGGACGTGCCGCATGTGTGCGACTACCTCCCCGATCTACCGACATACTCAAATCCAC 120 * * * * * * * * * * * * consensus_11133#0 CAAGAAAGACGCCGGCGGACGGAGCGGGAGCG-ACGACCTCGCCGGGCCGCAC-GCACGC 119 consensus_11133#3 CAAGAAAGACGCCGGCGGACGGAGCGGGAGCG-ACGACCTCGCCGGGCCGCAC-GCACGC 120 consensus_11133#2 TGTATGCGAAACTGGTGCTCAAAATATC-GAG-AC-ACTACTGAAAGTCATAT-ACGAGC 147 consensus_11133#1 TGCAAGATAACCCGGCATACTCGGTTGTGAAGCAATACTTTGTAAACCCAGATGACACTG 180 * * ** * * * ** * * * consensus_11133#0 CCGCACGCACCACCACCTGCTGAAATCCCTGCGTCGTCTCGCCGTGGTGCTAGCTAATAC 179 consensus_11133#3 CCGCACGCACCACCACCTGCTGAAATCCTTGTGTCGTCTCGCCGTGGTGCTAG------- 173 consensus_11133#2 TC-TACACGG-ATTTTGTTTTGAAAAATCCATTCTACGAGATGGAGATGCCAA------- 198 consensus_11133#1 TCTGCCATAAGGCCATTGTTCACAAGGATGGCCCTACATGCTACCACTTCCGTCGTGCTG 240 * * ** * * consensus_11133#0 AGGAAAATTACTTCAGTTTCTACTCAGCATTCTTGTGTGATAATGGCGTCAGCAGCAATC 239 consensus_11133#3 ----------------TTTCTACTCAGCATTCTTGTTTGTTAATGGCGTCAGCAGCAATC 217 consensus_11133#2 ----------------TTCGTTGTGAGCTTTTTGATCTCAACCTGGC-TCAG--GTCATT 239 consensus_11133#1 GGCCTCGACAGAG-GGTGTTTTTTGAA---TCGGATGAGGTCCATGCATGCATTGTCACA 296 * * * * * * ** * * * consensus_11133#0 TA-CAGCCTTTTCATCATTAACAAATCTGGCGGCCTTATATACTACAAGGACTATGGCTC 298 consensus_11133#3 TA-CAGCCTTTTCATCATTAACAAATCTGGCGGCCTTATATACTACAAGG--TATTGTTT 274 consensus_11133#2 CA-GAAGGACCGCGTCA----CACTTCTGG-GTCGATGAATCATTTAGAAAACATGATGC 293 consensus_11133#1 TGTGGAGGACTGTGCCCTGGACTGAAC-ACTGTCATTAGGGAAATTGTA---TGTGGCTT 352 * * * * * * * consensus_11133#0 AGCAGGTAGGACGGACACCAATGACAGTCTACGCTT----GGCAAGTCTTTGGCATTCCA 354 consensus_11133#3 ACT--GTACTCCTGTTTCTCTT--CGTTCTTTCGGA----GCTGGACTCTGAACACCTTG 326 consensus_11133#2 ACC--ATGTCTTTGTAATTTTTCGGATTCCTGCACT----GC----CTTTGGA---TTTG 340 consensus_11133#1 ATATGACATGTATGGCGTCAGTAGGGTACTTGGAATTCAGGGTGGGTATAGAGGTTTCTA 412 * * * * * consensus_11133#0 TGCATGCTATCTCCCAGCAGCTGTCCCCTA-CACCTGG------CTGTGAAG-GCATTGA 406 consensus_11133#3 CACATCTCATTTGTCCAGGACTATGGCTCAGCAGGTAG------GACGGACA-CCAATGA 379 consensus_11133#2 CTCA-GCCACAAACCAAAG--TATTCTTTCGTATGTGT------TGCTGATAATTAATGA 391 consensus_11133#1 TGCTTGCAACACCATTGACTTGAGTCCAAAGAGTGTAAACGACATTCCCAAAAGGGGTGG 472 * * * * ** consensus_11133#0 CCTTCTACAAGCC-CACAACTTTGA--TCTCCATTGCTTCCAGTCCCTCACAGGGACAAA 463 consensus_11133#3 CAGTCTACGCTTGGCAAGTCTTTGG--CATTCCATGCATGCTATCTCCCA-------GCA 430 consensus_11133#2 TATGAACATCATGATGTATTGCTCA--CTTACTCATCTGTAAATCTCTTATAAG---GTG 446 consensus_11133#1 AACTGTTCTTGGGACATCACGTGGAGGCCATGACACCATGAAGATTGTTGACAG--CATC 530 * consensus_11133#0 GTTTTTTGCTGTATGCGAAACTGGTGCTCAAAATATCGAGACTCTACTGAAAGTCATATA 523 consensus_11133#3 GCTGTCCCCTACACA------TGGCTGCGAAGGCATTGACCTTCTACA------------ 472 consensus_11133#2 CTGGATCGTAGCATT------TTGCAGAAAAAAA-------------------------- 474 consensus_11133#1 CAGGATCGTGGTATAAATCAGGTTTATGTAATTGGTGGTGATGGTACTCAAAGGGGTGCA 590 * ** consensus_11133#0 CGAGCTCTACACGGATTTTGTTCTGAAAAATCCATTCTACGAGATGGAGATGCCAATTCG 583 consensus_11133#3 ------------------------------------------------------------ consensus_11133#2 ------------------------------------------------------------ consensus_11133#1 GGAGTGATTTTTGAAGAGATTAGAAGACGTGGTCTCAAGGTTGCTGTTGCTGGCATTCCA 650 consensus_11133#0 TTGTGAGCTTTTTGATCTCAACCTGGCTCAGGTCATTCAGAAGGACCGCGTCACACTTCT 643 consensus_11133#3 ------------------------------------------------------------ consensus_11133#2 ------------------------------------------------------------ consensus_11133#1 AAGACGATTGATAATGATATACCAGTAATTGACAGATCATTTGGTTTCCACACTGCAGTT 710 consensus_11133#0 GGGTCGATGAATCATTTAGAAAACATGACGCACCATGTCTTTGTATGTGGCTTATATGAC 703 consensus_11133#3 ------------------------------------------------------------ consensus_11133#2 ------------------------------------------------------------ consensus_11133#1 GAGGAGGCCCAACGTGCA------------------------------------------ 728 consensus_11133#0 ATGTATGGTGTCAGTAGGGTACTTGGAATTCAGGCAAGTCATTACACTGCATCACAAAGT 763 consensus_11133#3 ------------------------------------------------------------ consensus_11133#2 ------------------------------------------------------------ consensus_11133#1 ------------------------------------------------------------ consensus_11133#0 CCATATACAGTGTGCAGTCGATTCCTTCTAGTTCTGAAAATTACTTTATTCCTGAAGTAT 823 consensus_11133#3 ------------------------------------------------------------ consensus_11133#2 ------------------------------------------------------------ consensus_11133#1 ------------------------------------------------------------ consensus_11133#0 CATTAAA 830 consensus_11133#3 ------- consensus_11133#2 ------- consensus_11133#1 ------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||