These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11137#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1222 fasta sequence [TTCGGCGTGCGGCTCACGTCGCCGCCGGAGGTGGCGATGAAGAAGAGCGCGAGCATGAGCTGCATCGCGTCGTCGCTCGGGAGTGGCGGTGGGTCAGGGGGTTCGTCGCCGGCGGGAACGGGAAGGGGAGGAGGAGGAGGGGGAGAGGGCGCGGCCGGGTACGCGTCCGACGACCCCACGCACGCCTCCTGCTCGACGAATGGCCGCGGCGAGCGGAAGAAAGGTACACCTTGGACTGAAGAAGAGCATAGAATGTTTCTAATGGGTCTGCAGAAGCTTGGTAAAGGAGACTGGCGTGGGATCTCTCGTAATTTTGTTGTTTCCAGGACACCAACTCAGGTGGCTAGCCATGCTCAAAAGTACTTCATTAGACAGACAAACTCATCAAGAAGGAAGAGGAGGTCAAGCTTGTTTGACATGGTCCCAGAAATGCCCATGGACGAATCCCCAGTGGTCGTAGAACAGCTTATGCTCCATAGTACTCAAGACGAAGCCACAAGCTCAAATCAATTGCCAATATCACATCTTGTGAAACAGAAGGAACCTGAGTTTGCTAGACACCTGTCGGATTTGCAGCTAAGGAAGCATGAGGAATCTGAGTTCACAGAACCTTCACTAGCAGCACTAGACTTGGAGATGAACCATGCTGCACCTTTCAAGACTAAATTTGTTCTGACAATGCCAACATTCTACCCGGCATTAATACCTGTTCCACTAACTCTTTGGCCT-CCAAATGTTGCTAATGTGGGTGAATCAGGCACAAATCATGAAATCCTAAAGCCCACTCCAGTGAATGGAAAGGAGGTGATCAATAAGGCTGATGAGGTTGTTGGCATGT-CCAAGCTTACCATAGGTGACGGCAGCTCTAACTCCATAGAACCCTCTGCTCTTTCCCTTCAGCTTACTGGACCGACAAATACAAGACAATCAGCTTTTCATGTGAACCCACCAATGGCTGGACCTGACCTAAATAAGAGAAACAACAGCCCAATTCATGCAGTTTGAGAAAGCATGGAAAAGGCCTGCTGGGTCAAATCTTATAGATTATATATTACTTCCCCAATACCATAGAATGTTGCATAAGGTCCTGAGCATGTACTTTTGTAGCAGCTTCTGAGTTGTATCACCATATTATGTTCTTTGATATCGATAATGAAAAATGTTGTATGCATATACCTTTGATAATACATCCTCCATCCTTTGGAGAAAATGGTTTTCAGTT] [+] EMBL AK071611 [TTCGGCGTGCGGCTCACGTCGCCGCCGGAGGTGGCGATGAAGAAGAGCGCGAGCATGAGCTGCATCGCGTCGTCGCTCGGGAGTGGCGGTGGGTCAGGGGGTTCGTCGCCGGCGGGAACGGGAAGGGGAGGAGGAGGAGGGGGAGAGGGCGCGGCCGGGTACGCGTCCGACGACCCCACGCACGCCTCCTGCTCGACGAATGGCCGCGGCGAGCGGAAGAAAGGTACACCTTGGACTGAAGAAGAGCATAGAATGTTTCTAATGGGTCTGCAGAAGCTTGGTAAAGGAGACTGGCGTGGGATCTCTCGTAATTTTGTTGTTTCCAGGACACCAACTCAGGTGGCTAGCCATGCTCAAAAGTACTTCATTAGACAGACAAACTCATCAAGAAGGAAGAGGAGGTCAAGCTTGTTTGACATGGTCCCAGAAATGCCCATGGACGAATCCCCAGTGGTCGTAGAACAGCTTATGCTCCATAGTACTCAAGACGAAGCCACAAGCTCAAATCAATTGCCAATATCACATCTTGTGAAACAGAAGGAACCTGAGTTTGCTAGACACCTGTCGGATTTGCAGCTAAGGAAGCATGAGGAATCTGAGTTCACAGAACCTTCACTAGCAGCACTAGACTTGGAGATGAACCATGCTGCACCTTTCAAGACTAAATTTGTTCTGACAATGCCAACATTCTACCCGGCATTAATACCTGTTCCACTAACTCTTTGGCCT CCAAATGTTGCTAATGTGGGTGAATCAGGTACAAATCATGAAATCCTAAAGCCCACTCCAGTGAATGGAAAGGAGGTGATCAATAAGGCTGATGAGGTTGTTGGCATGT CCAAGCTTACCATAGGTGACGGCAGCTCTAACTCCATAGAACCCTCTGCTCTTTCCCTTCAGCTTACTGGACCGACAAATACAAGACAATCAGCTTTTCATGTGAACCCACCAATGGCTGGACCTGACCTAAATAAGAGAAACAACAGCCCAATTCATGCAGTTTGAGAAAGCATGGAAAAGGCCTGCTGGGTCAAATCTTATAGATTATATATTACTTCCCCAATACCATAGAATGTTGCATAAGGTCCTGAGCATGTACTTTTGTAGCAGCTTCTGAGTTGTATCACCATATTATGTTCTTTGATATCGATAATGAAAAATGTTGTATGCATATACCTTTGATAATACATCCTCCATCCTTTGGAGAA ] [+] EMBL CB646671 [TTCGGCGTGCGGCTCACGTCGCCGCCGGAGGTGGCGATGAAGAAGAGCGCGAGCATGAGCTGCATCGCGTCGTCGCTCGGGAGTGGCGGTGGGTCAGGGGGTTCGTCGCCGGCGGGAACGGGAAGGGGAGGAGGAGGAGGGGGAGAGGGCGCGGCCGGGTACGCGTCCGACCACCCCACGCACGCCTCCTGCTCGACGAATGGCCGCGGCGAGCGGAAGAAAGGTACACCTTGGACTGAACAAGAGCATAGAATGTTTCTAATGGGTCTGCAGAAGCTTGGTAAAGGAGACTGGCGTGGGATCTCTCGTAATTTTGTTGTTTCCAGGACACCTGCTCAGGTGGCTAGCCATGCTCACAAGTACTTCATTAGACAGACAAGCTCATCAAGAAGGAATACGAGGTCAAGCTT ] [-] EMBL CB653113 [ ATTGCCAATATCACATCTTGTGAAACAGAAGGAACCTGAGTTTGCTAGACACCTGTCGGATTTGCAGCTAAGGAAGCATGAGGAATCTGAGTTCACAGAACCTTCACTAGCAGCACTAGACTTGGAGATGAACCATGCTGCACCTTTCAAGACTAAATTTGTTTTGACAATGCCAACATTTTACCCGGCATTAATACCTGTTCCACTAACTCTTTGGCCT CCAAATGTTGCTAATGTGGGTGAATCAGGCACAAATCATGAAATCCTAAAGCCCACTCCAGTGAATGGAAAGGAGGTGATCAATAAGGCTGATGAGGTTGTTGGCATGT CCAAGCTTACCATAGGTGACGGCAGCTCTAACTCCATAGAACCCTCTGCTCTTTCCCTTCAGCTTACTGGACCGACAAATACAAGACAATCAGCTTTTCATGTGAACCCACCAATGGCTGGACCTGACCTAAATAAGAGAAACAACAGCCCAATTCATGCAGTTTGAGAAAGCATGGAAAAGGCCTGCTGGGTCAAATCTTATAGATTATATATTACTTCCCCAATACCATAGAATGTTGCATAAGGTCCTGAGCATGTACTTTTGTAGCAGCTTTTGAGTTGTATCACCATATTATGTTCTTTGATATCGATAATGAAAAATGTTGTATGCATATACCTTTGATAATACATCCTCCATCCTTTGGAGAAAATGGTTTTCAGTT] [+] EMBL AU091667 [ CTAACTCTTTGGCCTCCCAAATGTTGCTAATGTGGGTGANTCAGGCACAAATCATGAAATCCTAAAGCCCACTCCAGTGAATGGANAGGAGGTGATCAATAAGGCTGATGAGGTTGTTGGCATGTCCCAAGCTTACCATAGGTGACGGCAGCTCTAACTCCATAGAACCCTCTGCTCTTTCCCTTCAGCTTACTGGACCGACAAATACAAGACAATCAGCTTTNCATGTGAACCCACCAATGGCTGGACCTGACCTAAATAAGAGAAACAACAGCCCAATTCATGCAGTTTGAGAAAGCATGGAAAAGGCCTGCTGGGTCAAATCTTATAGATTATATATTACTTCCCCAATACCATAGAATGTTGCATAAGGTCCTGAGCATGTACTTTTGTAGCAGCTTCTGAGTTGTATCACCATATTATGTTCTTTGATATCGATAATGAAAAATGTTGTATGCATATACCTTTGATAAaa ] consensusID : consensus_11137#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 692 fasta sequence [AAGCCNCAAGCTCAAATCAATTGCCAATATCACATCTTGTGAAACAGAAGGAACCTGAGTNTGCTAGACACCTGTGGGATTTGCAGCTAAGGAAGCATGAGGAATCTGAGTTCACAGAACCTTCACTAGCAGCACTAGACTTGGAGATGAACCATGCTGCACCTTTCAAGACTAAATTTGTTCTGACAATGCCAACATTCTACCCGGCATTAATACCTGTTCCACTAACTCTTTGGCCTCCAAATGTTGCTAATGTGGGTGAATCAGGCACAAATCATGAAATCCTAAAGCCCACTCCAGTGAATGGAAAGGAGGTGATCAATAAGGCTGATGAGGTTGTTGGCATGTCCAAGCTTACCATAGGTGACGGCAGCTCTAACTCCATAGAACCCTCTGCTCTTTCCCTTCAGCTTACTGGACCGACAAATACAAGACAATCAGCTTTTCATGTGAACCCACCAATGGCTGGACCTGACCTAAATAAGAGAAACAACAGCCCAATTCATGCAGTTTGAGAAAGCATGGAAAAGGCCTGCTGGGTCAAATCTTATAGATTATATATTACTTCCCCAATACCATAGAATGTTGCATAAGGTCCTGAGCATGTACTTTTGTAGCAGCTTTTGAGTTGTATCACCATATTATGTTCTTTGATATCGATAATGAAAAATGTTGTATGCAAAAAAAAAAAA] [-] EMBL CA759944 [AAGCCNCAAGCTCAAATCAATTGCCAATATCACATCTTGTGAAACAGAAGGAACCTGAGTNTGCTAGACACCTGTGGGATTTGCAGCTAAGGAAGCATGAGGAATCTGAGTTCACAGAACCTTCACTAGCAGCACTAGACTTGGAGATGAACCATGCTGCACCTTTCAAGACTAAATTTGTTCTGACAATGCCAACATTCTACCCGGCATTAATACCTGTTCCACTAACTCTTTGGCCTCCAAATGTTGCTAATGTGGGTGAATCAGGCACAAATCATGAAATCCTAAAGCCCACTCCAGTGAATGGAAAGGAGGTGATCAATAAGGCTGATGAGGTTGTTGGCATGTCCAAGCTTACCATAGGTGACGGCAGCTCTAACTCCATAGAACCCTCTGCTCTTTCCCTTCAGCTTACTGGACCGACAAATACAAGACAATCAGCTTTTCATGTGAACCCACCAATGGCTGGACCTGACCTAAATAAGAGAAACAACAGCCCAATTCATGCAGTTTGAGAAAGCATGGAAAAGGCCTGCTGGGTCAAATCTTATAGATTATATATTACTTCCCCAATACCATAGAATGTTGCATAAGGTCCTGAGCATGTACTTTTGTAGCAGCTTTTGAGTTGTATCACCATATTATGTTCTTTGATATCGATAATGAAAAATGTTGTATGCAAAAAAAAAAAA] consensusID : consensus_11137#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 274 fasta sequence [ATGGGCTGAAGGAGTAGAAAAAAGAAACATCAGCCCAATTCATGCAGTTTGAGAAAGCATGGAAAAGGCCTGCTGGGTCAAATTTTATAGA-TTATATATTACTTCCCCAATACCATAGAATGTTGCATAAGGTCCTGAGCATGTACTTTTGTAGCAGCTTTTGAGTTGTATCACCATATTATGTTCTTTGA-AACGAAAAATAAAAAATGTTGTATGCATA-ACCTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACACTGTCTTGCCG] [-] EMBL CF321256 [ATGGGCTGAAGGAGTAGAAAAAAGAAACATCAGCCCAATTCATGCAGTTTGAGAAAGCATGGAAAAGGCCTGCTGGGTCAAATTTTATAGA TTATATATTACTTCCCCAATACCATAGAATGTTGCATAAGGTCCTGAGCATGTACTTTTGTAGCAGCTTTTGAGTTGTATCACCATATTATGTTCTTTGA AACGAAAAATAAAAAATGTTGTATGCATA ACCTTTAAAAAAAAAAAAAAAAAAAAAAA ] [+] EMBL CF321255 [ aaCAGCCCAATTCATGCAGTTTGAGAAAGCATGGAAAAGGCCTGCTGGGTCAAATCTTATAGANTTATATATTACTTCCCCAATACCATAGAATGTTGCATAAGGTCCTGAGCATGTACTTTTGTAGCAGCTTCTGAGTTGTATCACCATATTATGTTCTTTGATATCG ATAATGAAAAATGTTGTATGCATATACCTTTGATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACACTGTCTTGCCG] consensusID : consensus_11137#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 163 fasta sequence [ACCATATTATGTTCTTTGATATCGATAATGAAAAATGTTGTATGCATATACCTTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTTTATAAAAAAAAAAAAAA] [+] EMBL CF330520 [ACCATATTATGTTCTTTGATATCGATAATGAAAAATGTTGTATGCATATACCTTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTTTATAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11137#0 TTCGGCGTGCGGCTCACGTCGCCGCCGGAGGTGGCGATGAAGAAGAGCGCGAGCATGAGC 60 consensus_11137#1 ------------------------------------------------------------ consensus_11137#2 ------------------------------------------------------------ consensus_11137#3 ------------------------------------------------------------ consensus_11137#0 TGCATCGCGTCGTCGCTCGGGAGTGGCGGTGGGTCAGGGGGTTCGTCGCCGGCGGGAACG 120 consensus_11137#1 ------------------------------------------------------------ consensus_11137#2 ------------------------------------------------------------ consensus_11137#3 ------------------------------------------------------------ consensus_11137#0 GGAAGGGGAGGAGGAGGAGGGGGAGAGGGCGCGGCCGGGTACGCGTCCGACGACCCCACG 180 consensus_11137#1 ------------------------------------------------------------ consensus_11137#2 ------------------------------------------------------------ consensus_11137#3 ------------------------------------------------------------ consensus_11137#0 CACGCCTCCTGCTCGACGAATGGCCGCGGCGAGCGGAAGAAAGGTACACCTTGGACTGAA 240 consensus_11137#1 ------------------------------------------------------------ consensus_11137#2 ------------------------------------------------------------ consensus_11137#3 ------------------------------------------------------------ consensus_11137#0 GAAGAGCATAGAATGTTTCTAATGGGTCTGCAGAAGCTTGGTAAAGGAGACTGGCGTGGG 300 consensus_11137#1 ------------------------------------------------------------ consensus_11137#2 ------------------------------------------------------------ consensus_11137#3 ------------------------------------------------------------ consensus_11137#0 ATCTCTCGTAATTTTGTTGTTTCCAGGACACCAACTCAGGTGGCTAGCCATGCTCAAAAG 360 consensus_11137#1 ------------------------------------------------------------ consensus_11137#2 ------------------------------------------------------------ consensus_11137#3 ------------------------------------------------------------ consensus_11137#0 TACTTCATTAGACAGACAAACTCATCAAGAAGGAAGAGGAGGTCAAGCTTGTTTGACATG 420 consensus_11137#1 ------------------------------------------------------------ consensus_11137#2 ------------------------------------------------------------ consensus_11137#3 ------------------------------------------------------------ consensus_11137#0 GTCCCAGAAATGCCCATGGACGAATCCCCAGTGGTCGTAGAACAGCTTATGCTCCATAGT 480 consensus_11137#1 ------------------------------------------------------------ consensus_11137#2 ------------------------------------------------------------ consensus_11137#3 ------------------------------------------------------------ consensus_11137#0 ACTCAAGACGAAGCCACAAGCTCAAATCAATTGCCAATATCACATCTTGTGAAACAGAAG 540 consensus_11137#1 ----------AAGCCNCAAGCTCAAATCAATTGCCAATATCACATCTTGTGAAACAGAAG 50 consensus_11137#2 ------------------------------------------------------------ consensus_11137#3 ------------------------------------------------------------ consensus_11137#0 GAACCTGAGTTTGCTAGACACCTGTCGGATTTGCAGCTAAGGAAGCATGAGGAATCTGAG 600 consensus_11137#1 GAACCTGAGTNTGCTAGACACCTGTGGGATTTGCAGCTAAGGAAGCATGAGGAATCTGAG 110 consensus_11137#2 ------------------------------------------------------------ consensus_11137#3 ------------------------------------------------------------ consensus_11137#0 TTCACAGAACCTTCACTAGCAGCACTAGACTTGGAGATGAACCATGCTGCACCTTTCAAG 660 consensus_11137#1 TTCACAGAACCTTCACTAGCAGCACTAGACTTGGAGATGAACCATGCTGCACCTTTCAAG 170 consensus_11137#2 ------------------------------------------------------------ consensus_11137#3 ------------------------------------------------------------ consensus_11137#0 ACTAAATTTGTTCTGACAATGCCAACATTCTACCCGGCATTAATACCTGTTCCACTAACT 720 consensus_11137#1 ACTAAATTTGTTCTGACAATGCCAACATTCTACCCGGCATTAATACCTGTTCCACTAACT 230 consensus_11137#2 ------------------------------------------------------------ consensus_11137#3 ------------------------------------------------------------ consensus_11137#0 CTTTGGCCTCCAAATGTTGCTAATGTGGGTGAATCAGGCACAAATCATGAAATCCTAAAG 780 consensus_11137#1 CTTTGGCCTCCAAATGTTGCTAATGTGGGTGAATCAGGCACAAATCATGAAATCCTAAAG 290 consensus_11137#2 ------------------------------------------------------------ consensus_11137#3 ------------------------------------------------------------ consensus_11137#0 CCCACTCCAGTGAATGGAAAGGAGGTGATCAATAAGGCTGATGAGGTTGTTGGCATGTCC 840 consensus_11137#1 CCCACTCCAGTGAATGGAAAGGAGGTGATCAATAAGGCTGATGAGGTTGTTGGCATGTCC 350 consensus_11137#2 ------------------------------------------------------------ consensus_11137#3 ------------------------------------------------------------ consensus_11137#0 AAGCTTACCATAGGTGACGGCAGCTCTAACTCCATAGAACCCTCTGCTCTTTCCCTTCAG 900 consensus_11137#1 AAGCTTACCATAGGTGACGGCAGCTCTAACTCCATAGAACCCTCTGCTCTTTCCCTTCAG 410 consensus_11137#2 ------------------------------------------------------------ consensus_11137#3 ------------------------------------------------------------ consensus_11137#0 CTTACTGGACCGACAAATACAAGACAATCAGCTTTTCATGTGAACCCACCAATGGCTGGA 960 consensus_11137#1 CTTACTGGACCGACAAATACAAGACAATCAGCTTTTCATGTGAACCCACCAATGGCTGGA 470 consensus_11137#2 --------------------------------------------------ATGGGCTGAA 10 consensus_11137#3 ------------------------------------------------------------ consensus_11137#0 CCTGACCTAAATAAGAGAAACAACAGCCCAATTCATGCAGTTTGAGAAAGCATGGAAAAG 1020 consensus_11137#1 CCTGACCTAAATAAGAGAAACAACAGCCCAATTCATGCAGTTTGAGAAAGCATGGAAAAG 530 consensus_11137#2 ---GGAGTAGAAAAAAGAAACATCAGCCCAATTCATGCAGTTTGAGAAAGCATGGAAAAG 67 consensus_11137#3 ------------------------------------------------------------ consensus_11137#0 GCCTGCTGGGTCAAATCTTATAGATTATATATTACTTCCCCAATACCATAGAATGTTGCA 1080 consensus_11137#1 GCCTGCTGGGTCAAATCTTATAGATTATATATTACTTCCCCAATACCATAGAATGTTGCA 590 consensus_11137#2 GCCTGCTGGGTCAAATTTTATAGATTATATATTACTTCCCCAATACCATAGAATGTTGCA 127 consensus_11137#3 -----------------------ACCATATTATG-TTCTTTGATATCG----ATAATGAA 32 * **** * *** *** * ** ** * consensus_11137#0 TAAGGTCCTGAGCATGTACTTTTGTAGCAGCTTCTGAGTTGTATCACCATATTATGTTCT 1140 consensus_11137#1 TAAGGTCCTGAGCATGTACTTTTGTAGCAGCTTTTGAGTTGTATCACCATATTATGTTCT 650 consensus_11137#2 TAAGGTCCTGAGCATGTACTTTTGTAGCAGCTTTTGAGTTGTATCACCATATTATGTTCT 187 consensus_11137#3 AAATGTTGTATGCATATACCTTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 92 ** ** * **** *** **** * * * * * * * * consensus_11137#0 TTGATATCGATAATGAAAAATGTTGTATGCATATACCTTTGATAATACATCCTCCATCCT 1200 consensus_11137#1 TTGATATCGATAATGAAAAATGTTGTATGCAAAAAAAAAAAA------------------ 692 consensus_11137#2 TTGAAACGAAAAATAAAAAATGTTGTATGCATAACCTTTAAAAAAAAAAAAAAAAAAAAA 247 consensus_11137#3 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTTTATAAA 152 * * * ** ***** * * * * consensus_11137#0 TTGGAGAAAATGGTTTTCAGTT----- 1222 consensus_11137#1 --------------------------- consensus_11137#2 AAAAAAAAAAAAAACACTGTCTTGCCG 274 consensus_11137#3 AAAAAAAAAAA---------------- 163 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||